jgi.p|Nanoce1779_2|585957, mRNA_3955 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585957
Unique Name	mRNA_3955
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1676
Alignment location	scaffold_8:487197..488872 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586043
Track	FilteredModels2
ProteinId	585957

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:487197..488872 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585957	gene_3955	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585957	mRNA_3955-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3955	CDS_3955	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:487197..488872+
coding sequence from alignment at scaffold_8:487197..488872+

mRNA sequence

>mRNA_3955 ID=mRNA_3955|Name=jgi.p|Nanoce1779_2|585957|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACATCAACAACAACAACAACACC
AATATGACAGAGCTTTGATTCGGATAAAAAAAGAGCTGCAACAAAACGAG
CTGCCCCCAAATTGTACTGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAG
CCCCACCAGCAACTTGCTCCACTTGCGTGTGTCGATGCTCGGCCCACCAG
GGAGCTTTTTTGAAGGCGAGACTCTCCACTTCGAGCTCGATATACCGCTG
GCGTATCCTTTTAAAGCGCCCCATGTCACCTGCCACTCCCGCTGCTGGCA
TCCCAACATCTGTCCTGATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGG
AACACTGGCGGCCCACCCTATCCCTTAGTATCCTTATTTACGGCTTGCAA
CTCGCATTGGTGGAACCTAATTTAGACGTGACTGTAAATATGGCCGCCGC
AGACACGTATACACATAACCCTGAACGATTTCACCGCCAAGTTCGAGATG
TCCTGAATGGACATGGCGCGTGGGGGCTGGGCAACAGCAGCAACAGCAGG
ACGAGCAGCAGTCGGGGTGACACTAGCTGGAGGGATGGAGAGAGGGAGGG
AATAAGACCACTGATGCCGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGC
TTATTCCTCCGCGGGGCCGAGGAATAGTGGTTGAGCCGAACAGAAGCAAC
ATTAGTAGTAGTAGTAGTAGTAGCATCAGCAGCAGCAGTGGCAATTATGC
GTGTGGCTCTGTACGGAAGCGCAAGCTCCTCCATCAGATGGAACCCCCCG
AACAAGGCCTTGAAGCCATGTGCATCGACGACAGCAGCAAGATCACTAGC
AGCTGCTCTGCCAACACCAGCGTATTGCTCGACTTTTCACCCAGCGAAGA
CGAGAGGAAACCACTCTCTCGCCCGGGTAGCGGGCAGCACCCCAAACGTG
CAAGGAGCGTCAGTGATGGAGGAGGAGAAGGAGAAGGAGGAGGTGACATG
GATCTGGCCATGCTAGCAGCAGCGGCAGCAGCACCAGGAAGAGATCAGCA
GCATTCTGAGAGCTTTCCGTTTTCGATGATGATAGCGAGTGAGGATGGAG
GGGTCTTCATGGCACCGCCCCCAGCGAGCTAGACGGTGGAAATGACGTAG
AATTGGAAAGGAGGGGCGGCGAGCACGAAAGAGAAAAGAGTCGCTGTCTA
TTTTTCGAGTTCGACAGCCGATGCTAACGACTGACGATGGGGCTTGTCGA
GGCGCGGTTATCAGCAAGCTGGACCAGCAGAAGACGGAAAAGAGAGAGGA
AGATAGGTGGTGAATGGGCCGGTTGAAGGAGACCCAGAAATAACTAGAGG
GGAGAGGGGCGGATATTTCTTATTGGAGGATGTATACGTCTGAAGAGAAG
AAAAGAATGGACGATAGAGACAATAGATTTTATTAGCATTACCAGCAGTA
CTACCAGCAGCACCGTCAGCAGCAACTGGGCCGGTTGAAGGCAAGCAAGA
GAAACACTCAAACTAACCCTAACCCTATGAAGAGAGAGAGGGGTAGGGCA
TGTGTCATGGAAGAAAATGTATATCCGAAGAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGA

protein sequence of jgi.p|Nanoce1779_2|585957

>mRNA_3955-protein ID=mRNA_3955-protein|Name=jgi.p|Nanoce1779_2|585957|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVA
LSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFH
RQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAV
TGVGGLIPPRGRGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLH
QMEPPEQGLEAMCIDDSSKITSSCSANTSVLLDFSPSEDERKPLSRPGSG
QHPKRARSVSDGGGEGEGGGDMDLAMLAAAAAAPGRDQQHSESFPFSMMI
ASEDGGVFMAPPPAS*

mRNA from alignment at scaffold_8:487197..488872+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3955 ID=mRNA_3955|Name=jgi.p|Nanoce1779_2|585957|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_8:487197..488872+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACATCAACAACAACAACAACACC
AATATGACAGAGCTTTGATTCGGATAAAAAAAGAGCTGCAACAAAACGAG
CTGCCCCCAAATTGTACTGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAG
CCCCACCAGCAACTTGCTCCACTTGCGTGTGTCGATGCTCGGCCCACCAG
GGAGCTTTTTTGAAGGCGAGACTCTCCACTTCGAGCTCGATATACCGCTG
GCGTATCCTTTTAAAGCGCCCCATGTCACCTGCCACTCCCGCTGCTGGCA
TCCCAACATCTGTCCTGATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGG
AACACTGGCGGCCCACCCTATCCCTTAGTATCCTTATTTACGGCTTGCAA
CTCGCATTGGTGGAACCTAATTTAGACGTGACTGTAAATATGGCCGCCGC
AGACACGTATACACATAACCCTGAACGATTTCACCGCCAAGTTCGAGATG
TCCTGAATGGACATGGCGCGTGGGGGCTGGGCAACAGCAGCAACAGCAGG
ACGAGCAGCAGTCGGGGTGACACTAGCTGGAGGGATGGAGAGAGGGAGGG
AATAAGACCACTGATGCCGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGC
TTATTCCTCCGCGGGGCCGAGGAATAGTGGTTGAGCCGAACAGAAGCAAC
ATTAGTAGTAGTAGTAGTAGTAGCATCAGCAGCAGCAGTGGCAATTATGC
GTGTGGCTCTGTACGGAAGCGCAAGCTCCTCCATCAGATGGAACCCCCCG
AACAAGGCCTTGAAGCCATGTGCATCGACGACAGCAGCAAGATCACTAGC
AGCTGCTCTGCCAACACCAGCGTATTGCTCGACTTTTCACCCAGCGAAGA
CGAGAGGAAACCACTCTCTCGCCCGGGTAGCGGGCAGCACCCCAAACGTG
CAAGGAGCGTCAGTGATGGAGGAGGAGAAGGAGAAGGAGGAGGTGACATG
GATCTGGCCATGCTAGCAGCAGCGGCAGCAGCACCAGGAAGAGATCAGCA
GCATTCTGAGAGCTTTCCGTTTTCGATGATGATAGCGAGTGAGGATGGAG
GGGTCTTCATGGCACCGCCCCCAGCGAGCTAGACGGTGGAAATGACGTAG
AATTGGAAAGGAGGGGCGGCGAGCACGAAAGAGAAAAGAGTCGCTGTCTA
TTTTTCGAGTTCGACAGCCGATGCTAACGACTGACGATGGGGCTTGTCGA
GGCGCGGTTATCAGCAAGCTGGACCAGCAGAAGACGGAAAAGAGAGAGGA
AGATAGGTGGTGAATGGGCCGGTTGAAGGAGACCCAGAAATAACTAGAGG
GGAGAGGGGCGGATATTTCTTATTGGAGGATGTATACGTCTGAAGAGAAG
AAAAGAATGGACGATAGAGACAATAGATTTTATTAGCATTACCAGCAGTA
CTACCAGCAGCACCGTCAGCAGCAACTGGGCCGGTTGAAGGCAAGCAAGA
GAAACACTCAAACTAACCCTAACCCTATGAAGAGAGAGAGGGGTAGGGCA
TGTGTCATGGAAGAAAATGTATATCCGAAGAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGA

Coding sequence (CDS) from alignment at scaffold_8:487197..488872+

>mRNA_3955 ID=mRNA_3955|Name=jgi.p|Nanoce1779_2|585957|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_8:487197..488872+ (Nannochloropsis oceanica)
ATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGCGAGACTCTCCACTTCGA
GCTCGATATACCGCTGGCGTATCCTTTTAAAGCGCCCCATGTCACCTGCC
ACTCCCGCTGCTGGCATCCCAACATCTGTCCTGATTCCGGTCTAGTCGCT
TTGTCCATTCTAGGGGAACACTGGCGGCCCACCCTATCCCTTAGTATCCT
TATTTACGGCTTGCAACTCGCATTGGTGGAACCTAATTTAGACGTGACTG
TAAATATGGCCGCCGCAGACACGTATACACATAACCCTGAACGATTTCAC
CGCCAAGTTCGAGATGTCCTGAATGGACATGGCGCGTGGGGGCTGGGCAA
CAGCAGCAACAGCAGGACGAGCAGCAGTCGGGGTGACACTAGCTGGAGGG
ATGGAGAGAGGGAGGGAATAAGACCACTGATGCCGGCCTGTGGTGCGGTG
ACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGCCGAGGAATAGTGGTTGA
GCCGAACAGAAGCAACATTAGTAGTAGTAGTAGTAGTAGCATCAGCAGCA
GCAGTGGCAATTATGCGTGTGGCTCTGTACGGAAGCGCAAGCTCCTCCAT
CAGATGGAACCCCCCGAACAAGGCCTTGAAGCCATGTGCATCGACGACAG
CAGCAAGATCACTAGCAGCTGCTCTGCCAACACCAGCGTATTGCTCGACT
TTTCACCCAGCGAAGACGAGAGGAAACCACTCTCTCGCCCGGGTAGCGGG
CAGCACCCCAAACGTGCAAGGAGCGTCAGTGATGGAGGAGGAGAAGGAGA
AGGAGGAGGTGACATGGATCTGGCCATGCTAGCAGCAGCGGCAGCAGCAC
CAGGAAGAGATCAGCAGCATTCTGAGAGCTTTCCGTTTTCGATGATGATA
GCGAGTGAGGATGGAGGGGTCTTCATGGCACCGCCCCCAGCGAGCTAG

Synonyms

Publications