jgi.p|Nanoce1779_2|419103, mRNA_3953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|419103
Unique NamemRNA_3953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length516
Alignment locationscaffold_8:480085..480786 -

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Properties
Property NameValue
TranscriptId419189
TrackFilteredModels2
ProteinId419103
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:480085..480786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|419103gene_3953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|419103mRNA_3953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3953CDS_3953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3953 ID=mRNA_3953|Name=jgi.p|Nanoce1779_2|419103|organism=Nannochloropsis oceanica|type=mRNA|length=516bp
GGTGCTCGGGAAGCGCTCTCGTTTTCTTCTTTTCATTTATGTGAGTGAAG
GGGTGTTGGTTCCCTTCCTGTGTCTTGTCTCTTGACTTTCCTTATTGAAC
TTTGTCGCAAATTACACATGTTTGAATGTTGGTACAGGAGGAAAAGGAAG
AGAACGAAGCTAATTCTGGGGGTGAAATGGCGGACCTGGCTGTTGTGTGT
TGTCGTCTTCTGTGTTCTCTTAAATTTTTCTTTATGTTTTCTCTCCTCCT
TCATGATGTGGCTTGTGTGTTCTCTATCTAGACAGCGGGGGGGGGGGGGC
GACACGGCTACTTCAGGCCGTCCGTCCCTTGGTTTTCACTTTCATACCGT
TAACCCCTTCCCTCTCCTCTTGTTCTTTCTCCTCCTCCTTTTCATTTCCC
CTTTGTAATCTATCTATAGTCCCTTGTGAACCACCCTTTCACATATCTTT
AATCGCCGGAGTGGTATCATTTCATGGCTTTTTCTCTTATCGCTTGCAAA
ACAAACCCGTCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|419103

>mRNA_3953-protein ID=mRNA_3953-protein|Name=jgi.p|Nanoce1779_2|419103|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MFECWYRRKRKRTKLILGVKWRTWLLCVVVFCVLLNFSLCFLSSFMMWLV
CSLSRQRGGGGDTATSGRPSLGFHFHTVNPFPLLLFFLLLLFISPL*
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mRNA from alignment at scaffold_8:480085..480786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3953 ID=mRNA_3953|Name=jgi.p|Nanoce1779_2|419103|organism=Nannochloropsis oceanica|type=mRNA|length=702bp|location=Sequence derived from alignment at scaffold_8:480085..480786- (Nannochloropsis oceanica)
GGTGCTCGGGAAGCGCTCTCGTTTTCTTCTTTTCATTTATGTGAGTGAAG
GGGTGTTGGTTCCCTTCCTGTGTCTTGTCTCTTGACTTTCCTTATTGAAC
TTTGTCGCAAATTACACATGTTTGAATGTTGGTACAGGAGGAAAAGGAAG
AGAACGAAGCTAATTCTGGGGGTGAAATGGCGGACCTGGCTGTTGTGTGT
TGTCGTCTTCTGTGTTCTCTTAAATTTTTCTTTATGTTTTCTCTCCTCCT
TCATGATGTGGCTTGTGTGTTCTCTATCTAGACAGCGGGGGGGGGGGGGC
GACACGGCTACTTCAGGCCGTCCGTCCCTTGGTTTTCACTTTCATACCGT
TAACCCCTTCCCTCTCCTCTTGTTCTTTCTCCTCCTCCTTTTCATTTCCC
CTTTGTAATCTATCTATAGTCCCTTGTGAACCACCCTTTCACATATCTTT
AATCGCCGGAGTGGTATCATTTCATGGCTTTTTCTCTTATCGCTTGCATT
GAATTTGTTCTCCTTCCTGAGACCTCCATTGGGTTGACAAATCGATTGGT
GCTCTGGGGTCTGTATCCCTGAATTGCTGGTGCCGACGTGGGTCTCTTCT
TCTACCTCTACGCACGCACGCTCGCTTGATCCCCTGTCGTTCCTGATGTC
CTCCACTCAAAAAAACAAGCACAACACACATACAAAACAAACCCGTCTCC
CC
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Coding sequence (CDS) from alignment at scaffold_8:480085..480786-

>mRNA_3953 ID=mRNA_3953|Name=jgi.p|Nanoce1779_2|419103|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_8:480085..480786- (Nannochloropsis oceanica)
ATGTTTGAATGTTGGTACAGGAGGAAAAGGAAGAGAACGAAGCTAATTCT
GGGGGTGAAATGGCGGACCTGGCTGTTGTGTGTTGTCGTCTTCTGTGTTC
TCTTAAATTTTTCTTTATGTTTTCTCTCCTCCTTCATGATGTGGCTTGTG
TGTTCTCTATCTAGACAGCGGGGGGGGGGGGGCGACACGGCTACTTCAGG
CCGTCCGTCCCTTGGTTTTCACTTTCATACCGTTAACCCCTTCCCTCTCC
TCTTGTTCTTTCTCCTCCTCCTTTTCATTTCCCCTTTGTAA
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Synonyms
Publications