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Properties
| Property Name | Value |
|---|
| TranscriptId | 586028 |
| Track | FilteredModels2 |
| ProteinId | 585942 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:477972..480786 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3952 ID=mRNA_3952|Name=jgi.p|Nanoce1779_2|585942|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp
AATAGGAAGCCACCATGAAGTCCGCCCTCTTTGTGTCCTCCCTCCTTATG
GGGGCCCAAGCGTTCACGCCCACGCTGCCCCTCAACAACGCCTTTGTCCA
ACGCCAGGCTGCCCGCGCCGAGCCGGCCCGTGCCGCCCGTGGACGAGGAG
ACATGGACATGAAGTACCGCGTGGTAGTGGTGGGCGGTGGCCCCTCGGGC
TCCTGCGCTGCCGAGGAGATGGCGAAGGACAAGAATATCGAGACCGTCCT
CCTGGAGCGCAAGATGGACAACGCCAAGCCCTGCGGTGGTGCTATCCCCC
TCTGCATGGTGTCCGAGTTTGACCTGCCCCCTGAGATCATCGACCGAAAG
GTCCGCAAGATGAAGATGATCAGCCCGACCAACCGCGAGGTGGACATTGG
GCAGACGCTGAAGCCCAATGAGTACATCGGTATGACCCGCCGCGAAGTTC
TGGACGGATTCCTGCGTCAACGTGCTGTGAACAACGGCGCGACGGCCATC
AACGGCCTGGTTACCAAGGTGGAGCTCCCCACCACCGAGGGCGGGCGCTA
CAAGATTCACTACTCCAACTTCGAGAAGGGAACGGGCGCTGCTGGTGTCC
CGGAGATGATCGAGGCCGATGTGATCATTGGTGCTGATGGTGCCAACTCC
CGCGTGGCCAAGGCGATCGATGCCGGCGAGTACAACTACGCGATTGCCTT
CCAGGAGCGCATCAAGATCTCAGAGGAGAAGATGCAGTTCTATGAGGAAC
TGGCGGAGATGTATGTGGGCGATGACGTGTCCCCTGATTTCTATGCGTGG
GTCTTCCCCAAGTATGACCATGTGGGTGTCGGGACAGGGACGGTGATCAA
CCGACCTGCCATCAAGATGTACCAGAAGGCCATCCGCGACCGTGCCGGTG
ACAAGATTGCCAACGGGAAGATCATCAAGGTGGAGGCTCACCCTATCCCC
GAGCATCCCCGCCCCAGGCGTGTGGTGGGCCGTGTAGCTCTCATTGGCGA
TGCTGCTGGTTATGTGACCAAATGCTCGGGGGAGGGAATTTACTTTGCCG
CCAAGTCCGGCCGTATGGCCGCGGCGTCCATCAGGGAGTTGATGGCAGGG
GGGACAAGGCTACCGACGGAGAAGGAGATCAAGGACACGTACATTAAGGA
CTACGACCGACTTTATGGTCCTACGTACACGGTGCTGGACATCTTGCAGA
AGGTGTTTTACTCGTCTAACGCAGCCAGGGAGGCGTTCGTGGAGTTGTGC
GAGAGTGAGTACGTGCAGAAGGTGACGTTCGACTCCTACCTGTACAAGCG
TGTACAGGGCAACAACCCGGTGGAGGACATCAAGCTGTTGTTCAAGACCA
TTGGTGCCTTGATGCGTGGCAATGCCTTGGCTCCCCCTGACAAGCCGGTC
TACAACCCGGTGGAGAGCTTGAAACGGTTGTAAGCGGGTCGGACGAGGAA
AGGAGGGAGGAAGGAAGGAATGAAGGACATGGTGGTACGTGGAGGAAATA
AATAAGGAACCTGCTTGATGCATTGTAATGTGTCTGGTCAACCCTGTCAG
GTATCCGAAGCGTCTGTAAAATGGTGCTTAGGGAATGATTAAAGGAATGG
AGTTTTGATAAGGTGGGGAGACGGGTTTGTTTTGTATGTGTGTTGTGCTT
GTTTTTTTGAGTGGAGGACATCAGGAACGACAGGGGATCAAGCGAGCGTG
CGTGCGTAGAGGTAGAAGAAGAGACCCACGTCGGCACCAGCAATTCAGGG
ATACAGACCCCAGAGCACCAATCGATTTGTCAACCCAATGGAGGTCTCAG
GAAGGAGAACAAATTCAATGCAAGCGATAAGAGAAAAAGCCATGAAATGA
TACCACTCCGGCGATTAAAGATATGTGAAAGGGTGGTTCACAAGGGACTA
TAGATAGATTACAAAGGGGAAATGAAAAGGAGGAGGAGAAAGAACAAGAG
GAGAGGGAAGGGGTTAACGGTATGAAAGTGAAAACCAAGGGACGGACGGC
CTGAAGTAGCCGTGTCGCCCCCCCCCCCCCGCTGTCTAGATAGAGAACAC
ACAAGCCACATCATGAAGGAGGAGAGAAAACATAAAGAAAAATTTAAGAG
AACACAGAAGACGACAACACACAACAGCCAGGTCCGCCATTTCACCCCCA
GAATTAGCTTCGTTCTCTTCCTTTTCCTCCTGTACCAACATTCAAACATG
TGTAATTTGCGACAAAGTTCAATAAGGAAAGTCAAGAGACAAGACACAGG
AAGGGAACCAACACCCCTTCACTCACATAAATGAAAAGAAGAAAACGAGA
GCGCTTCCCGAGCACC back to topprotein sequence of jgi.p|Nanoce1779_2|585942 >mRNA_3952-protein ID=mRNA_3952-protein|Name=jgi.p|Nanoce1779_2|585942|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MKSALFVSSLLMGAQAFTPTLPLNNAFVQRQAARAEPARAARGRGDMDMK
YRVVVVGGGPSGSCAAEEMAKDKNIETVLLERKMDNAKPCGGAIPLCMVS
EFDLPPEIIDRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFL
RQRAVNNGATAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPEMIE
ADVIIGADGANSRVAKAIDAGEYNYAIAFQERIKISEEKMQFYEELAEMY
VGDDVSPDFYAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIAN
GKIIKVEAHPIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGR
MAAASIRELMAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQKVFYS
SNAAREAFVELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALM
RGNALAPPDKPVYNPVESLKRL* back to topmRNA from alignment at scaffold_8:477972..480786+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3952 ID=mRNA_3952|Name=jgi.p|Nanoce1779_2|585942|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp|location=Sequence derived from alignment at scaffold_8:477972..480786+ (Nannochloropsis oceanica)
AATAGGAAGCCACCATGAAGTCCGCCCTCTTTGTGTCCTCCCTCCTTATG
GGGGCCCAAGCGTTCACGCCCACGCTGCCCCTCAACAACGCCTTTGTCCA
ACGCCAGGCTGCCCGCGCCGAGCCGGCCCGTGCCGCCCGTGGACGAGGAG
GTGAGTCAGTGCGAGGGCGGGGACAGTATAGTGAAACGCAAAGATATTCG
CGTAAGGGAACAAAAAGGGCAAGTCGAGATGCAAGGGTCGTATAGAAACA
TGACATCATCACCATCTTGTTGCACTCACCCTAATTTACTGCCCGGTCGT
GCCTTACTTGTGACACAGTAGAAAACAACTCAAGCCATTCTCCCCACCAC
CCACCGTCCCACTTCCCCTTTTTCCTCACTCGCCTTCCGTATGAACATGT
TAGCACAGAGATTCTCAATCTTACCACTCCCTCACATCACCAGCGCCCTT
ATGTTCCTCACTCAAGTTCGGACACCACAAATGACTCACCATTTCACTGC
GATCCCTTCCCCGCAGGGCGGGTTCAGACATGATCAACAACATCAATACG
TTCCCCTTGCTTCCTAGCTCGCTCTGTAGGAGCAGAATATTCACACCAAT
CACTCTTTTCACCACCTTCTCACTCTCTTTGTCCTCCCCTCCCAAACAGA
CATGGACATGAAGTACCGCGTGGTAGTGGTGGGCGGTGGCCCCTCGGGCT
CCTGCGCTGCCGAGGAGATGGCGAAGGACAAGAATATCGAGACCGTCCTC
CTGGAGCGCAAGATGGACAACGCCAAGCCCTGCGGTGGTGCTATCCCCCT
CTGCATGGTGTCCGAGTTTGACCTGCCCCCTGAGATCATCGACCGAAAGG
TCCGCAAGATGAAGATGATCAGCCCGACCAACCGCGAGGTGGACATTGGG
CAGACGCTGAAGCCCAATGAGTACATCGGTATGACCCGCCGCGAAGTTCT
GGACGGATTCCTGCGTCAACGTGCTGTGAACAACGGCGCGACGGCCATCA
ACGGCCTGGTTACCAAGGTGGAGCTCCCCACCACCGAGGGCGGGCGCTAC
AAGATTCACTACTCCAACTTCGAGAAGGGAACGGGCGCTGCTGGTGTCCC
GGAGATGATCGAGGCCGATGTGATCATTGGTGCTGATGGTGCCAACTCCC
GCGTGGCCAAGGCGATCGATGCCGGCGAGTACAACTACGCGATTGCCTTC
CAGGAGCGCATCAAGATCTCAGAGGAGAAGATGCAGTTCTATGAGGAACT
GGCGGAGATGTATGTGGGCGATGACGTGTCCCCTGATTTCTATGCGTGGG
TCTTCCCCAAGTATGACCATGTGGGTGTCGGGACAGGGACGGTGATCAAC
CGACCTGCCATCAAGATGTACCAGAAGGCCATCCGCGACCGTGCCGGTGA
CAAGATTGCCAACGGGAAGATCATCAAGGTGGAGGCTCACCCTATCCCCG
AGCATCCCCGCCCCAGGCGTGTGGTGGGCCGTGTAGCTCTCATTGGCGAT
GCTGCTGGTTATGTGACCAAATGCTCGGGGGAGGGAATTTACTTTGCCGC
CAAGTCCGGCCGTATGGCCGCGGCGTCCATCAGGGAGTTGATGGCAGGGG
GGACAAGGCTACCGACGGAGAAGGAGATCAAGGACACGTACATTAAGGAC
TACGACCGACTTTATGGTCCTACGTACACGGTGCTGGACATCTTGCAGAA
GGTGTTTTACTCGTCTAACGCAGCCAGGGAGGCGTTCGTGGAGTTGTGCG
AGAGTGAGTACGTGCAGAAGGTGACGTTCGACTCCTACCTGTACAAGCGT
GTACAGGGCAACAACCCGGTGGAGGACATCAAGCTGTTGTTCAAGACCAT
TGGTGCCTTGATGCGTGGCAATGCCTTGGCTCCCCCTGACAAGCCGGTCT
ACAACCCGGTGGAGAGCTTGAAACGGTTGTAAGCGGGTCGGACGAGGAAA
GGAGGGAGGAAGGAAGGAATGAAGGACATGGTGGTACGTGGAGGAAATAA
ATAAGGAACCTGCTTGATGCATTGTAATGTGTCTGGTCAACCCTGTCAGG
TATCCGAAGCGTCTGTAAAATGGTGCTTAGGGAATGATTAAAGGAATGGA
GTTTTGATAAGGTGGGGAGACGGGTTTGTTTTGTATGTGTGTTGTGCTTG
TTTTTTTGAGTGGAGGACATCAGGAACGACAGGGGATCAAGCGAGCGTGC
GTGCGTAGAGGTAGAAGAAGAGACCCACGTCGGCACCAGCAATTCAGGGA
TACAGACCCCAGAGCACCAATCGATTTGTCAACCCAATGGAGGTCTCAGG
AAGGAGAACAAATTCAATGCAAGCGATAAGAGAAAAAGCCATGAAATGAT
ACCACTCCGGCGATTAAAGATATGTGAAAGGGTGGTTCACAAGGGACTAT
AGATAGATTACAAAGGGGAAATGAAAAGGAGGAGGAGAAAGAACAAGAGG
AGAGGGAAGGGGTTAACGGTATGAAAGTGAAAACCAAGGGACGGACGGCC
TGAAGTAGCCGTGTCGCCCCCCCCCCCCCGCTGTCTAGATAGAGAACACA
CAAGCCACATCATGAAGGAGGAGAGAAAACATAAAGAAAAATTTAAGAGA
ACACAGAAGACGACAACACACAACAGCCAGGTCCGCCATTTCACCCCCAG
AATTAGCTTCGTTCTCTTCCTTTTCCTCCTGTACCAACATTCAAACATGT
GTAATTTGCGACAAAGTTCAATAAGGAAAGTCAAGAGACAAGACACAGGA
AGGGAACCAACACCCCTTCACTCACATAAATGAAAAGAAGAAAACGAGAG
CGCTTCCCGAGCACC back to topCoding sequence (CDS) from alignment at scaffold_8:477972..480786+ >mRNA_3952 ID=mRNA_3952|Name=jgi.p|Nanoce1779_2|585942|organism=Nannochloropsis oceanica|type=CDS|length=2838bp|location=Sequence derived from alignment at scaffold_8:477972..480786+ (Nannochloropsis oceanica)
ATGAAGTCCGCCCTCTTTGTGTCCTCCCTCCTTATGGGGGCCCAAGCGTT
CACGCCCACGCTGCCCCTCAACAACGCCTTTGTCCAACGCCAGGCTGCCC
GCGCCGAGCCGGCCCGTGCCGCCCGTGGACGAGGAGACATGGACATGAAG
TACCGCGTGGTAGTGGTGGGCGGTGGCCCCTCGGGCTCCTGCGCTGCCGA
GGAGATGGCGAAGGACAAGAATATCGAGACCGTCCTCCTGGAGCGCAAGA
TGGACAACGCCAAGCCCTGCGGTGGTGCTATCCCCCTCTGCATGGTGTCC
GAGTTTGACCTGCCCCCTGAGATCATCGACCGAAAGGTCCGCAAGATGAA
GATGATCAGCCCGACCAACCGCGAGGTGGACATTGGGCAGACGCTGAAGC
CCAATGAGTACATCGGTATGACCCGCCGCGAAGTTCTGGACGGATTCCTG
CGTCAACGTGCTGTGAACAACGGCGCGACGGCCATCAACGGCCTGGTTAC
CAAGGTGGAGCTCCCCACCACCGAGGGCGGGCGCTACAAGATTCACTACT
CCAACTTCGAGAAGGGAACGGGCGCTGCTGGTGTCCCGGAGATGATCGAG
GCCGATGTGATCATTGGTGCTGATGGTGCCAACTCCCGCGTGGCCAAGGC
GATCGATGCCGGCGAGTACAACTACGCGATTGCCTTCCAGGAGCGCATCA
AGATCTCAGAGGAGAAGATGCAGTTCTATGAGGAACTGGCGGAGATGTAT
GTGGGCGATGACGTGTCCCCTGATTTCTATGCGTGGGTCTTCCCCAAGTA
TGACCATGTGGGTGTCGGGACAGGGACGGTGATCAACCGACCTGCCATCA
AGATGTACCAGAAGGCCATCCGCGACCGTGCCGGTGACAAGATTGCCAAC
GGGAAGATCATCAAGGTGGAGGCTCACCCTATCCCCGAGCATCCCCGCCC
CAGGCGTGTGGTGGGCCGTGTAGCTCTCATTGGCGATGCTGCTGGTTATG
TGACCAAATGCTCGGGGGAGGGAATTTACTTTGCCGCCAAGTCCGGCCGT
ATGGCCGCGGCGTCCATCAGGGAGTTGATGGCAGGGGGGACAAGGCTACC
GACGGAGAAGGAGATCAAGGACACGTACATTAAGGACTACGACCGACTTT
ATGGTCCTACGTACACGGTGCTGGACATCTTGCAGAAGGTGTTTTACTCG
TCTAACGCAGCCAGGGAGGCGTTCGTGGAGTTGTGCGAGAGTGAGTACGT
GCAGAAGGTGACGTTCGACTCCTACCTGTACAAGCGTGTACAGGGCAACA
ACCCGGTGGAGGACATCAAGCTGTTGTTCAAGACCATTGGTGCCTTGATG
CGTGGCAATGCCTTGGCTCCCCCTGACAAGCCGGTCTACAACCCGGTGGA
GAGCTTGAAACGGTTGTAAATGAAGTCCGCCCTCTTTGTGTCCTCCCTCC
TTATGGGGGCCCAAGCGTTCACGCCCACGCTGCCCCTCAACAACGCCTTT
GTCCAACGCCAGGCTGCCCGCGCCGAGCCGGCCCGTGCCGCCCGTGGACG
AGGAGACATGGACATGAAGTACCGCGTGGTAGTGGTGGGCGGTGGCCCCT
CGGGCTCCTGCGCTGCCGAGGAGATGGCGAAGGACAAGAATATCGAGACC
GTCCTCCTGGAGCGCAAGATGGACAACGCCAAGCCCTGCGGTGGTGCTAT
CCCCCTCTGCATGGTGTCCGAGTTTGACCTGCCCCCTGAGATCATCGACC
GAAAGGTCCGCAAGATGAAGATGATCAGCCCGACCAACCGCGAGGTGGAC
ATTGGGCAGACGCTGAAGCCCAATGAGTACATCGGTATGACCCGCCGCGA
AGTTCTGGACGGATTCCTGCGTCAACGTGCTGTGAACAACGGCGCGACGG
CCATCAACGGCCTGGTTACCAAGGTGGAGCTCCCCACCACCGAGGGCGGG
CGCTACAAGATTCACTACTCCAACTTCGAGAAGGGAACGGGCGCTGCTGG
TGTCCCGGAGATGATCGAGGCCGATGTGATCATTGGTGCTGATGGTGCCA
ACTCCCGCGTGGCCAAGGCGATCGATGCCGGCGAGTACAACTACGCGATT
GCCTTCCAGGAGCGCATCAAGATCTCAGAGGAGAAGATGCAGTTCTATGA
GGAACTGGCGGAGATGTATGTGGGCGATGACGTGTCCCCTGATTTCTATG
CGTGGGTCTTCCCCAAGTATGACCATGTGGGTGTCGGGACAGGGACGGTG
ATCAACCGACCTGCCATCAAGATGTACCAGAAGGCCATCCGCGACCGTGC
CGGTGACAAGATTGCCAACGGGAAGATCATCAAGGTGGAGGCTCACCCTA
TCCCCGAGCATCCCCGCCCCAGGCGTGTGGTGGGCCGTGTAGCTCTCATT
GGCGATGCTGCTGGTTATGTGACCAAATGCTCGGGGGAGGGAATTTACTT
TGCCGCCAAGTCCGGCCGTATGGCCGCGGCGTCCATCAGGGAGTTGATGG
CAGGGGGGACAAGGCTACCGACGGAGAAGGAGATCAAGGACACGTACATT
AAGGACTACGACCGACTTTATGGTCCTACGTACACGGTGCTGGACATCTT
GCAGAAGGTGTTTTACTCGTCTAACGCAGCCAGGGAGGCGTTCGTGGAGT
TGTGCGAGAGTGAGTACGTGCAGAAGGTGACGTTCGACTCCTACCTGTAC
AAGCGTGTACAGGGCAACAACCCGGTGGAGGACATCAAGCTGTTGTTCAA
GACCATTGGTGCCTTGATGCGTGGCAATGCCTTGGCTCCCCCTGACAAGC
CGGTCTACAACCCGGTGGAGAGCTTGAAACGGTTGTAA back to top
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