jgi.p|Nanoce1779_2|585939, mRNA_3951 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585939
Unique NamemRNA_3951
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1271
Alignment locationscaffold_8:475601..476871 -

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Properties
Property NameValue
TranscriptId586025
TrackFilteredModels2
ProteinId585939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:475601..476871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585939gene_3951Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585939mRNA_3951-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3951CDS_3951Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3951 ID=mRNA_3951|Name=jgi.p|Nanoce1779_2|585939|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
ACAGCATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACG
GCAAGCAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGT
CATTTCCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACA
CTGACACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTT
TTCACGGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGA
AGCTGACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTT
TCTTGGGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCG
GCGGTGCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGC
GGTATGGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGG
ATGCTTTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACT
GACACGCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGG
GATGAAGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCA
TGGTAACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGT
GTCGCATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTT
GATCTACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTT
TGTACAATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTT
TTTGCTGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTT
GGAGCAGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGT
CATCGTATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTA
GGGGCGACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGC
GGACATGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGG
GCATGGCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACG
ATGGTTGACCAGTGCTGAGTGACCAGTGCTGAGTGATAGGAATGAGAAAT
GTATAGTTGAACTGCGTTTCTCCCACGTGTACATAGATAAGGGAAGATAG
ATAGGTATGAGGTGAGTGCACCAGGTTGGAGACAGATGATGAAAGAAAAG
AAAGCACCAAGTCCTGTCAGG
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protein sequence of jgi.p|Nanoce1779_2|585939

>mRNA_3951-protein ID=mRNA_3951-protein|Name=jgi.p|Nanoce1779_2|585939|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MAPNKRGGPLTRSSTASSGTKSLNLNDHSQSVISKQEIEDRGAGTSEDTD
TYLDMPFLRGEKRVFFTAVIFLTRLHTPRWCEADHHPAYLMRSMMHFPFL
GLIIGIWAAVWLEAAAVLWSPYIAAAVSTMAAVWITGAFHEDGLADSLDA
FGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLECLLPVTDAGMV
TQVSFLPFLTLSPASVALLVAHTVSRWTVLPLIYFCHYVQDEQSAKRGLY
NWFADSQKLLTLPRLFAGTLVSIAVPLVLLPLEQALHVYLVVLVVTIASS
YYGNLIIGGVIGDYLGATIQICELLIYLLLSADMKAAQANPSPLVVLLGM
ALLPILTSRPLIDFTMVDQC*
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mRNA from alignment at scaffold_8:475601..476871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3951 ID=mRNA_3951|Name=jgi.p|Nanoce1779_2|585939|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp|location=Sequence derived from alignment at scaffold_8:475601..476871- (Nannochloropsis oceanica)
ACAGCATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACG
GCAAGCAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGT
CATTTCCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACA
CTGACACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTT
TTCACGGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGA
AGCTGACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTT
TCTTGGGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCG
GCGGTGCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGC
GGTATGGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGG
ATGCTTTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACT
GACACGCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGG
GATGAAGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCA
TGGTAACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGT
GTCGCATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTT
GATCTACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTT
TGTACAATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTT
TTTGCTGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTT
GGAGCAGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGT
CATCGTATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTA
GGGGCGACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGC
GGACATGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGG
GCATGGCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACG
ATGGTTGACCAGTGCTGAGTGACCAGTGCTGAGTGATAGGAATGAGAAAT
GTATAGTTGAACTGCGTTTCTCCCACGTGTACATAGATAAGGGAAGATAG
ATAGGTATGAGGTGAGTGCACCAGGTTGGAGACAGATGATGAAAGAAAAG
AAAGCACCAAGTCCTGTCAGG
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Coding sequence (CDS) from alignment at scaffold_8:475601..476871-

>mRNA_3951 ID=mRNA_3951|Name=jgi.p|Nanoce1779_2|585939|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_8:475601..476871- (Nannochloropsis oceanica)
ATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACGGCAAG
CAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGTCATTT
CCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACACTGAC
ACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTTTTCAC
GGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGAAGCTG
ACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTTTCTTG
GGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCGGCGGT
GCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGCGGTAT
GGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGGATGCT
TTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACTGACAC
GCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGGGATGA
AGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCATGGTA
ACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGTGTCGC
ATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTTGATCT
ACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTTTGTAC
AATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTTTTTGC
TGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTTGGAGC
AGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGTCATCG
TATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTAGGGGC
GACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGCGGACA
TGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGGGCATG
GCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACGATGGT
TGACCAGTGCTGA
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Synonyms
Publications