jgi.p|Nanoce1779_2|585937, mRNA_3950 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585937
Unique Name	mRNA_3950
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1422
Alignment location	scaffold_8:474189..475610 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586023
Track	FilteredModels2
ProteinId	585937

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:474189..475610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585937	gene_3950	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585937	mRNA_3950-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3950	CDS_3950	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:474189..475610+
coding sequence from alignment at scaffold_8:474189..475610+

mRNA sequence

>mRNA_3950 ID=mRNA_3950|Name=jgi.p|Nanoce1779_2|585937|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
CTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTCGATGCCCG
GCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGGTCTGCTGG
AGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTCAACCGCAT
ATTACCGCGGCCCGCCTCTTGATCTTCGCAGGTGATGTTGGGATTCATAA
ATGTAGAAGGGCATATCTACCCAGACAGCAACAAGGGGTGAAATATTGTG
CTACCAGCTTCTAAGACAGCCTCAACCAACATATACATAGGCGACCACGG
CATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGAGGTCACTC
TTCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTGCTATCCTC
AGCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGCATGGATAC
ACCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGGAGCGCCTC
ACCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCGACATGACA
TTAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAAGAGGTGGG
GGCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTACCATCACC
ATCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATTCGCGGCTC
GCTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCAGCCGCCGC
CTTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAACGGGAAGGG
GCACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAGTTATCGAG
AAAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGACCCTTCTCA
AATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGTTGGCGCAT
ATCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACGGGTTCGTC
TCAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCCTTGGCCAC
GTTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGCCGTCCTAC
TCCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAGTTTATCCA
CCGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGGGCTTTATT
GGCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGAGATGGTAA
CGATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTAGCAGCAGC
AGTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAATAAGAGGTT
TTAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAGGAACAAAC
GAACAAAATACACCTGACAGGA

protein sequence of jgi.p|Nanoce1779_2|585937

>mRNA_3950-protein ID=mRNA_3950-protein|Name=jgi.p|Nanoce1779_2|585937|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MDTPETEAQGPSSAASGAPHLTVTHAKVRRNSRDMTLGPALSPEERKAAE
EVGADAVRRYIAGHALYHHHHKTLDESTTATTHSRLAVCIGELGIGNTTA
AAALVAALTGEPAASVTGRGTGLGFEGMCLKVKVIEKALTVNSKLIQSHD
PSQILEAVGGLELAAMVGAYLEAGRHRMPILVDGFVSGAAALVALHRHPP
LATFLFWTHQSDEKGAAVLLQAAATKTREAGEPVYPPPLKMNLRLGEGTG
ALLALPLLRSACAIMREMVTMTSVVKSGSSSSCSSSSERDGNPRL*

mRNA from alignment at scaffold_8:474189..475610+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3950 ID=mRNA_3950|Name=jgi.p|Nanoce1779_2|585937|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp|location=Sequence derived from alignment at scaffold_8:474189..475610+ (Nannochloropsis oceanica)
CTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTCGATGCCCG
GCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGGTCTGCTGG
AGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTCAACCGCAT
ATTACCGCGGCCCGCCTCTTGATCTTCGCAGGTGATGTTGGGATTCATAA
ATGTAGAAGGGCATATCTACCCAGACAGCAACAAGGGGTGAAATATTGTG
CTACCAGCTTCTAAGACAGCCTCAACCAACATATACATAGGCGACCACGG
CATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGAGGTCACTC
TTCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTGCTATCCTC
AGCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGCATGGATAC
ACCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGGAGCGCCTC
ACCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCGACATGACA
TTAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAAGAGGTGGG
GGCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTACCATCACC
ATCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATTCGCGGCTC
GCTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCAGCCGCCGC
CTTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAACGGGAAGGG
GCACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAGTTATCGAG
AAAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGACCCTTCTCA
AATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGTTGGCGCAT
ATCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACGGGTTCGTC
TCAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCCTTGGCCAC
GTTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGCCGTCCTAC
TCCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAGTTTATCCA
CCGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGGGCTTTATT
GGCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGAGATGGTAA
CGATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTAGCAGCAGC
AGTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAATAAGAGGTT
TTAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAGGAACAAAC
GAACAAAATACACCTGACAGGA

Coding sequence (CDS) from alignment at scaffold_8:474189..475610+

>mRNA_3950 ID=mRNA_3950|Name=jgi.p|Nanoce1779_2|585937|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_8:474189..475610+ (Nannochloropsis oceanica)
ATGGATACACCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGG
AGCGCCTCACCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCG
ACATGACATTAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAA
GAGGTGGGGGCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTA
CCATCACCATCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATT
CGCGGCTCGCTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCA
GCCGCCGCCTTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAAC
GGGAAGGGGCACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAG
TTATCGAGAAAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGAC
CCTTCTCAAATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGT
TGGCGCATATCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACG
GGTTCGTCTCAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCC
TTGGCCACGTTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGC
CGTCCTACTCCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAG
TTTATCCACCGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGG
GCTTTATTGGCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGA
GATGGTAACGATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTA
GCAGCAGCAGTGAGAGGGACGGAAATCCCAGACTGTAA

Synonyms

Publications