jgi.p|Nanoce1779_2|577211, mRNA_395 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577211
Unique NamemRNA_395
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length741
Alignment locationscaffold_3:983009..984066 -

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Properties
Property NameValue
TranscriptId577297
TrackFilteredModels2
ProteinId577211
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:983009..984066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577211gene_395Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577211mRNA_395-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_395CDS_395Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_395 ID=mRNA_395|Name=jgi.p|Nanoce1779_2|577211|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
CAGGCAGGCACATAATCCGTCAGCCATGCGGCTCATCACGCACAACATGC
TCAAGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAG
GCCGACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGAATTTGTGCA
AAATTTGTTGCCGAAGATCGAGTGGGGGGCACTTCGGGAAGCAAGCAAAG
CGTTGGGAATGGATGAGCTGCCGGAAAAGGTTGAAGAAGGCAACAAGACA
GACGAATCATTTTTGGAAATAGTGCACAAGCTGTTGCTGGACGTACATGT
GCTGGAGGGGGCGTTGGTCTGCCCCGAGACAGGGAGGCGGTTTCCCATTA
ATGAGGGCATTCCAAATATGTTGCTGCATGAGGACGAGGTGGCGTAGAAG
AAAGGGGAGGAGAGGAAGAGATAAGGAGGGAAGAAGAGAGAGAGACAGAT
ATGGGTATGAATGTAAAGATAGCCAAAAGAAACAATGCCATCGCAATTAA
GACGACGATGGGACACATGTGCTATTTCCGTGTGTTAGATTTTCTTTTCG
GAGAGGAAAAAAAAGGCACGCATATGAACTTTTCAATTGCAATATGCTGA
GAGAATGAATTCCAATAAGAATAATAAACGTCTTGCGACATTAATCCGGC
CTGTGCCTGTGTTCCTCACTAATGGACACAAATCAAAGTAACAAGAGGAA
CAAGACCCAGTCGTAAAACAGCAGCTTCGGTTATGATCCTT
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protein sequence of jgi.p|Nanoce1779_2|577211

>mRNA_395-protein ID=mRNA_395-protein|Name=jgi.p|Nanoce1779_2|577211|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MRLITHNMLKSNIKGVVNGFPLRIEADKVEVKETEFNAEFVQNLLPKIEW
GALREASKALGMDELPEKVEEGNKTDESFLEIVHKLLLDVHVLEGALVCP
ETGRRFPINEGIPNMLLHEDEVA*
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mRNA from alignment at scaffold_3:983009..984066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_395 ID=mRNA_395|Name=jgi.p|Nanoce1779_2|577211|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp|location=Sequence derived from alignment at scaffold_3:983009..984066- (Nannochloropsis oceanica)
CAGGCAGGCACATAATCCGTCAGCCATGCGGCTCATCACGCACAACATGC
TCAAGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAATAGAG
GCCGACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGGTATGTTGAC
ATGGCATTGGGCAGAGAATGGAGAACGGAAATAGGAAGGAGGTGTCTGCC
GGCGATGTGTACTTGTAATGATTGCCTACGCTTGCATGGAACGTAATCGC
TCGTCTAATCTTCACTGGGCTGCATGTGTATCGTTATGTCTGTGTAGCAA
TGCCTAAGTGTGTGCTGCTTCGCATACCGTCGTATCCATGTACACTTTCT
CCGCAACCCCCCACACGACACAGAATTTGTGCAAAATTTGTTGCCGAAGA
TCGAGTGGGGGGCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGATGAG
CTGCCGGAAAAGGTAAGAACTACAGCGCTCCGTTCCTCCCTCACAGCTCC
CCCTCCTCCTCCCACCTACTAGCTTTCACCCTCGCCTCACCCACAGGTTG
AAGAAGGCAACAAGACAGACGAATCATTTTTGGAAATAGTGCACAAGCTG
TTGCTGGACGTACATGTGCTGGAGGGGGCGTTGGTCTGCCCCGAGACAGG
GAGGCGGTTTCCCATTAATGAGGGCATTCCAAATATGTTGCTGCATGAGG
ACGAGGTGGCGTAGAAGAAAGGGGAGGAGAGGAAGAGATAAGGAGGGAAG
AAGAGAGAGAGACAGATATGGGTATGAATGTAAAGATAGCCAAAAGAAAC
AATGCCATCGCAATTAAGACGACGATGGGACACATGTGCTATTTCCGTGT
GTTAGATTTTCTTTTCGGAGAGGAAAAAAAAGGCACGCATATGAACTTTT
CAATTGCAATATGCTGAGAGAATGAATTCCAATAAGAATAATAAACGTCT
TGCGACATTAATCCGGCCTGTGCCTGTGTTCCTCACTAATGGACACAAAT
CAAAGTAACAAGAGGAACAAGACCCAGTCGTAAAACAGCAGCTTCGGTTA
TGATCCTT
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Coding sequence (CDS) from alignment at scaffold_3:983009..984066-

>mRNA_395 ID=mRNA_395|Name=jgi.p|Nanoce1779_2|577211|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_3:983009..984066- (Nannochloropsis oceanica)
GTTGAAGAAGGCAACAAGACAGACGAATCATTTTTGGAAATAGTGCACAA
GCTGTTGCTGGACGTACATGTGCTGGAGGGGGCGTTGGTCTGCCCCGAGA
CAGGGAGGCGGTTTCCCATTAATGAGGGCATTCCAAATATGTTGCTGCAT
GAGGACGAGGTGGCGTAGAATTTGTGCAAAATTTGTTGCCGAAGATCGAG
TGGGGGGCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGATGAGCTGCC
GGAAAAGATGCGGCTCATCACGCACAACATGCTCAAGAGCAACATCAAGG
GCGTAGTAAATGGCTTTCCCTTGAGAATAGAGGCCGACAAGGTGGAGGTG
AAGGAGACGGAGTTCAACGCAGGTTGAAGAAGGCAACAAGACAGACGAAT
CATTTTTGGAAATAGTGCACAAGCTGTTGCTGGACGTACATGTGCTGGAG
GGGGCGTTGGTCTGCCCCGAGACAGGGAGGCGGTTTCCCATTAATGAGGG
CATTCCAAATATGTTGCTGCATGAGGACGAGGTGGCGTAGAATTTGTGCA
AAATTTGTTGCCGAAGATCGAGTGGGGGGCACTTCGGGAAGCAAGCAAAG
CGTTGGGAATGGATGAGCTGCCGGAAAAGATGCGGCTCATCACGCACAAC
ATGCTCAAGAGCAACATCAAGGGCGTAGTAAATGGCTTTCCCTTGAGAAT
AGAGGCCGACAAGGTGGAGGTGAAGGAGACGGAGTTCAACGCAGGTTGAA
GAAGGCAACAAGACAGACGAATCATTTTTGGAAATAGTGCACAAGCTGTT
GCTGGACGTACATGTGCTGGAGGGGGCGTTGGTCTGCCCCGAGACAGGGA
GGCGGTTTCCCATTAATGAGGGCATTCCAAATATGTTGCTGCATGAGGAC
GAGGTGGCGTAGAATTTGTGCAAAATTTGTTGCCGAAGATCGAGTGGGGG
GCACTTCGGGAAGCAAGCAAAGCGTTGGGAATGGATGAGCTGCCGGAAAA
GATGCGGCTCATCACGCACAACATGCTCAAGAGCAACATCAAGGGCGTAG
TAAATGGCTTTCCCTTGAGAATAGAGGCCGACAAGGTGGAGGTGAAGGAG
ACGGAGTTCAACGCAG
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Synonyms
Publications