jgi.p|Nanoce1779_2|585929, mRNA_3947 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585929
Unique NamemRNA_3947
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1534
Alignment locationscaffold_8:464384..465917 -

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Properties
Property NameValue
TranscriptId586015
TrackFilteredModels2
ProteinId585929
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:464384..465917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585929gene_3947Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585929mRNA_3947-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3947CDS_3947Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3947 ID=mRNA_3947|Name=jgi.p|Nanoce1779_2|585929|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
GTAAGCAAAAACGGCAAATTCACCATCATGATCCTTATGTGAAGCTTACG
AAGAATATCTATAGGCCGTCTTGTTGGTTTTGCTTTTTGTTATGTCTTTC
TGACTTAAACGCTCCCGCTGTGCATGAACATAATGTGGATTTGCTTGTTT
GTCATCTTGGTTATGCCCACCCTCTTGCCCAGATTCAGGCTCTGTTCACT
CACCACGCCCCACATCATCACAGGTTGCAGTAAAACGTGTCTCGTCCCCT
TTCTCTGCCCTGGGTGCATCAAGACATCGACCATGCAGCCGCGAAGCAGC
AGCAGTAATAGCAGTGGACGGCAGATAGGGCGAATTGTGGCGACGACTGC
GGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCCAACAAGCGCAAGCGTTCT
TCGTGCCGACACCTGGCAGCAGAGCAATGCACCAACGTCAGTCTCCTGCC
CAAGCACATCAGCGACGACCCGCTGCATGCTTTCTAACAAGCAGTAAACC
AAGCAGTCGGCTGTACGCACGGATCTCGGAAAAGCCAGGAGACCAGCAAG
ATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCCAAAGTGCTGGAGGACCTG
CCCAAGCTGACCCGTGGACAGGAAGAGGCGATAGACAGTGATATGGGCGT
GATACCACCAGAGACGGAGCCCTTGTCGGGGGAGGCCTGGACGGCGGAGG
TTGAGAAAAGGCTTCAAGACATGTATGAGAGGGGCACGTATGACCCGACC
CCGATTAATTTGACCCCCAAAGAGCTGGCCAAACAACAATGGGTTGACGA
GTTTCTGAACAAGGAAGAGCGGCCGATTCGTTTTACGCCTGAGTATTGGT
TCGGGACATGGACCAGGGGGGACATCAAATTCTCGTCGGCGGGGCGGGGG
CTAAAGTCTTTTGGGTTTGCCCTTGTGGGGATCGGTATCGTCACCCTTAT
CTTCTTGTTGGAGGATGAGTTGACTAATCCGATATTCGAGGACTACCAAA
AGTGGGACGGGAACGACTTTCTCCATTTCGGGGGCGATCTGGCAGGCTGG
GCGGCGTCTATTCCAGCGAGGGCGAGTGATTATATTTCGCACTTCAACTG
GATTGAGTGGAGTGCGCGGGTGGCGGCGCGGGCGGGGGCGGCGCCGAGGT
GGCAGAATCAGCTGTTGGGTCTGCCTTCTATTCCGCCGCAGTAAACCTTA
GCAGTGTTATTTCGAAAATGTTCTGTCTTTTGCCCCTTCCCTCGTCCTCT
TTCTCCAACCATGATTCACAAACCATATGTGAATTAAGAGACGTACAAAA
ACTTGAGGGGAAAAGATGTCAAACGATGTGTTGGCTACGAGCTGTGCAAG
AATTTGCTGCATCTGATGTCCAAGATATACATACTTTTTTATTTTTGTAT
CCTTTATTGCCAGGTTGAGGCGATACCTTTTCATTTCATGATATCTTTGT
AGCCATCCACCCACTGTTTCCCTTTTTCAGCTCAAGCCTTGAGCCATGCC
TCTACATCATTGGTAGCAGCAGCCACAGTAGTCG
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protein sequence of jgi.p|Nanoce1779_2|585929

>mRNA_3947-protein ID=mRNA_3947-protein|Name=jgi.p|Nanoce1779_2|585929|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MNIMWICLFVILVMPTLLPRFRLCSLTTPHIITGCSKTCLVPFLCPGCIK
TSTMQPRSSSSNSSGRQIGRIVATTAALGLVVALVAQQAQAFFVPTPGSR
AMHQRQSPAQAHQRRPAACFLTSSKPSSRLYARISEKPGDQQDREGESEQ
GLPKVLEDLPKLTRGQEEAIDSDMGVIPPETEPLSGEAWTAEVEKRLQDM
YERGTYDPTPINLTPKELAKQQWVDEFLNKEERPIRFTPEYWFGTWTRGD
IKFSSAGRGLKSFGFALVGIGIVTLIFLLEDELTNPIFEDYQKWDGNDFL
HFGGDLAGWAASIPARASDYISHFNWIEWSARVAARAGAAPRWQNQLLGL
PSIPPQ*
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mRNA from alignment at scaffold_8:464384..465917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3947 ID=mRNA_3947|Name=jgi.p|Nanoce1779_2|585929|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_8:464384..465917- (Nannochloropsis oceanica)
GTAAGCAAAAACGGCAAATTCACCATCATGATCCTTATGTGAAGCTTACG
AAGAATATCTATAGGCCGTCTTGTTGGTTTTGCTTTTTGTTATGTCTTTC
TGACTTAAACGCTCCCGCTGTGCATGAACATAATGTGGATTTGCTTGTTT
GTCATCTTGGTTATGCCCACCCTCTTGCCCAGATTCAGGCTCTGTTCACT
CACCACGCCCCACATCATCACAGGTTGCAGTAAAACGTGTCTCGTCCCCT
TTCTCTGCCCTGGGTGCATCAAGACATCGACCATGCAGCCGCGAAGCAGC
AGCAGTAATAGCAGTGGACGGCAGATAGGGCGAATTGTGGCGACGACTGC
GGCTTTAGGCCTGGTTGTGGCCTTGGTGGCCCAACAAGCGCAAGCGTTCT
TCGTGCCGACACCTGGCAGCAGAGCAATGCACCAACGTCAGTCTCCTGCC
CAAGCACATCAGCGACGACCCGCTGCATGCTTTCTAACAAGCAGTAAACC
AAGCAGTCGGCTGTACGCACGGATCTCGGAAAAGCCAGGAGACCAGCAAG
ATAGGGAGGGAGAAAGCGAGCAAGGGCTCCCCAAAGTGCTGGAGGACCTG
CCCAAGCTGACCCGTGGACAGGAAGAGGCGATAGACAGTGATATGGGCGT
GATACCACCAGAGACGGAGCCCTTGTCGGGGGAGGCCTGGACGGCGGAGG
TTGAGAAAAGGCTTCAAGACATGTATGAGAGGGGCACGTATGACCCGACC
CCGATTAATTTGACCCCCAAAGAGCTGGCCAAACAACAATGGGTTGACGA
GTTTCTGAACAAGGAAGAGCGGCCGATTCGTTTTACGCCTGAGTATTGGT
TCGGGACATGGACCAGGGGGGACATCAAATTCTCGTCGGCGGGGCGGGGG
CTAAAGTCTTTTGGGTTTGCCCTTGTGGGGATCGGTATCGTCACCCTTAT
CTTCTTGTTGGAGGATGAGTTGACTAATCCGATATTCGAGGACTACCAAA
AGTGGGACGGGAACGACTTTCTCCATTTCGGGGGCGATCTGGCAGGCTGG
GCGGCGTCTATTCCAGCGAGGGCGAGTGATTATATTTCGCACTTCAACTG
GATTGAGTGGAGTGCGCGGGTGGCGGCGCGGGCGGGGGCGGCGCCGAGGT
GGCAGAATCAGCTGTTGGGTCTGCCTTCTATTCCGCCGCAGTAAACCTTA
GCAGTGTTATTTCGAAAATGTTCTGTCTTTTGCCCCTTCCCTCGTCCTCT
TTCTCCAACCATGATTCACAAACCATATGTGAATTAAGAGACGTACAAAA
ACTTGAGGGGAAAAGATGTCAAACGATGTGTTGGCTACGAGCTGTGCAAG
AATTTGCTGCATCTGATGTCCAAGATATACATACTTTTTTATTTTTGTAT
CCTTTATTGCCAGGTTGAGGCGATACCTTTTCATTTCATGATATCTTTGT
AGCCATCCACCCACTGTTTCCCTTTTTCAGCTCAAGCCTTGAGCCATGCC
TCTACATCATTGGTAGCAGCAGCCACAGTAGTCG
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Coding sequence (CDS) from alignment at scaffold_8:464384..465917-

>mRNA_3947 ID=mRNA_3947|Name=jgi.p|Nanoce1779_2|585929|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_8:464384..465917- (Nannochloropsis oceanica)
ATGAACATAATGTGGATTTGCTTGTTTGTCATCTTGGTTATGCCCACCCT
CTTGCCCAGATTCAGGCTCTGTTCACTCACCACGCCCCACATCATCACAG
GTTGCAGTAAAACGTGTCTCGTCCCCTTTCTCTGCCCTGGGTGCATCAAG
ACATCGACCATGCAGCCGCGAAGCAGCAGCAGTAATAGCAGTGGACGGCA
GATAGGGCGAATTGTGGCGACGACTGCGGCTTTAGGCCTGGTTGTGGCCT
TGGTGGCCCAACAAGCGCAAGCGTTCTTCGTGCCGACACCTGGCAGCAGA
GCAATGCACCAACGTCAGTCTCCTGCCCAAGCACATCAGCGACGACCCGC
TGCATGCTTTCTAACAAGCAGTAAACCAAGCAGTCGGCTGTACGCACGGA
TCTCGGAAAAGCCAGGAGACCAGCAAGATAGGGAGGGAGAAAGCGAGCAA
GGGCTCCCCAAAGTGCTGGAGGACCTGCCCAAGCTGACCCGTGGACAGGA
AGAGGCGATAGACAGTGATATGGGCGTGATACCACCAGAGACGGAGCCCT
TGTCGGGGGAGGCCTGGACGGCGGAGGTTGAGAAAAGGCTTCAAGACATG
TATGAGAGGGGCACGTATGACCCGACCCCGATTAATTTGACCCCCAAAGA
GCTGGCCAAACAACAATGGGTTGACGAGTTTCTGAACAAGGAAGAGCGGC
CGATTCGTTTTACGCCTGAGTATTGGTTCGGGACATGGACCAGGGGGGAC
ATCAAATTCTCGTCGGCGGGGCGGGGGCTAAAGTCTTTTGGGTTTGCCCT
TGTGGGGATCGGTATCGTCACCCTTATCTTCTTGTTGGAGGATGAGTTGA
CTAATCCGATATTCGAGGACTACCAAAAGTGGGACGGGAACGACTTTCTC
CATTTCGGGGGCGATCTGGCAGGCTGGGCGGCGTCTATTCCAGCGAGGGC
GAGTGATTATATTTCGCACTTCAACTGGATTGAGTGGAGTGCGCGGGTGG
CGGCGCGGGCGGGGGCGGCGCCGAGGTGGCAGAATCAGCTGTTGGGTCTG
CCTTCTATTCCGCCGCAGTAA
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Synonyms
Publications