jgi.p|Nanoce1779_2|585927, mRNA_3946 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585927
Unique Name	mRNA_3946
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2713
Alignment location	scaffold_8:461696..464408 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586013
Track	FilteredModels2
ProteinId	585927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:461696..464408 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585927	gene_3946	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585927	mRNA_3946-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3946	CDS_3946	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:461696..464408+
coding sequence from alignment at scaffold_8:461696..464408+

mRNA sequence

>mRNA_3946 ID=mRNA_3946|Name=jgi.p|Nanoce1779_2|585927|organism=Nannochloropsis oceanica|type=mRNA|length=2713bp
CAACAGGAGGAGCATCATCTCATCTTCCGACTATCGAAATTTTGGAGCCT
TTTTCAAAGGCCGTTGCAAGACGCTTGCGGCTCCAACCTCTCCAACCCCT
TGCTTTCTTTCCTCATCGGCCCACCGCGTGGCAGGCAGCAGCAGCGTACG
CACAATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGA
AGCCTGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCG
GACAACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGA
TGTCGACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCA
GCTTGCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCAC
ACTGCGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGC
TGCGGCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAG
GAGGGGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAA
GAGGTAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAA
ACTTTTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGT
GTAAATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCA
GGGCAGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTG
TGCATATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTG
AAGGAGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGC
TACCGCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCG
ACGGTCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAG
CTCGACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCT
GCCGGGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCC
GTTGCCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAA
GGGATGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGA
ATGGGGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGG
ACCAGCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGAC
AGCGTACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTAC
GACTGCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCC
AGACAAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGAT
GAGGAAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGA
CATCCTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGA
GGCGCGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAG
AGTGAGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTA
CACGATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGG
ACAAGGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAA
GCGGATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGT
GGTGGGGTTGGAGGTAGGACGGAGGGGGGGGGGAGATGCGATGATGCTTC
AGATTCAACCCAGACCCATATACGTGAATCGGTGTCTGAGCGAGCACCTG
GCATTTCCACTAGTCCCATTCAGCGGTGGGATCCACAGGAAGAGGAAATT
GCACGAGAAGCAGGGATGGGGGGAGAGAGGGAGGGGAGAAGAAGAGGAAA
AAGAGGAGGGAGAGGCCCTTCCGACGGGTTTCGGGGAGTATTTGCCCATG
CCCCAGGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCAAAC
TGCGAGGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAAGCG
TGTCGAGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGGAGG
ACTATGATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGGGAA
GAGTGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAG
AAAAAGCGAAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCG
GCGGCACCGACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGA
GCAGCAGCATGGGCAACAGTAGTAACAGCAACAACAGCAGCAGCATCAAC
AGCAGCTGCAGCAGCAGTAACAGCAGCGTTCACAAAAGCAGCAGCAATAA
CTAGAGCAGAAGAAGCAGCATCTTAAGGAGCAGCAAATGATGCAAGAGGA
GGAGGAGGAGCAGCAGCAGCAGCGGCAGTACCGGCACATCCCCTTGCATA
ATCGTTCGCGGGCGCAGTCTCCTTAGCAGGCGCAGACAGCAGAATCACCA
GCTTGGCCAGAATGGCTGCCGCTGCCCGGCTGCCGCTGCGACTACTGTGG
CTGCTGCTACCAA

protein sequence of jgi.p|Nanoce1779_2|585927

>mRNA_3946-protein ID=mRNA_3946-protein|Name=jgi.p|Nanoce1779_2|585927|organism=Nannochloropsis oceanica|type=polypeptide|length=756bp
MAWAQSSQPPNKNKKKPAGCIEETGTVQRLLADNNPWVKVWNEDAEGEDV
DTEIVFSPQGRYAAVSLQGGGVLIWDLSTLPHTALQLDVPAHMPVRTCAA
AITRQLSNNRNRNRGGGGRSNASNKNKDRGDEEVDYVIAGLSWSSQADKL
LVTYHQQGGSPSSYLCKWNIPTAEVEAHCHCPGQLTGPAQISPVDEALCA
YFVGGSSCLRLQRLGEGGEVREKGLSSSSSSSSSSSSSNAEGSSANTTAT
AATEDPRLGLCLFSTDGQALYCVCVRDRRVLKLDVSTLQEEGRSPDMLLP
GQRVLVQKLRLSPDGRCLFVFTNRAAHLIETEGMRAAEPLGDFGAIKVEW
GCWSVGPARNQQQQQDQRQLVVVGVPCPFNGDSVQEGLFVWRVHGLDGTT
AADAAAADAAASTAGQTKDGEKSEDEDDEEGDEEDESNTGVPLVDPSPDI
LPGFIQGLQALEICPRRALLLGADCHGGLFVQSERFTTGFPGPMYAPGYT
ILGNNRTYLEREEELDKVVVPEGGDGKGTEEEADSEAAVPDEEGEVDVVV
GLEVGRRGGGDAMMLQIQPRPIYVNRCLSEHLAFPLVPFSGGIHRKRKLH
EKQGWGERGRGEEEEKEEGEALPTGFGEYLPMPQALVTLARKKRKAEQTA
REKEGGKERGRGGLSVSSQRFRAVETWAAKGRTMIKHALARELAESEGKS
ETAAAAAAAAAEKGGEKAKAKEAAAANAAKIAAAPTRQELQQEQEQQREQ
QHGQQ*

mRNA from alignment at scaffold_8:461696..464408+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3946 ID=mRNA_3946|Name=jgi.p|Nanoce1779_2|585927|organism=Nannochloropsis oceanica|type=mRNA|length=2713bp|location=Sequence derived from alignment at scaffold_8:461696..464408+ (Nannochloropsis oceanica)
CAACAGGAGGAGCATCATCTCATCTTCCGACTATCGAAATTTTGGAGCCT
TTTTCAAAGGCCGTTGCAAGACGCTTGCGGCTCCAACCTCTCCAACCCCT
TGCTTTCTTTCCTCATCGGCCCACCGCGTGGCAGGCAGCAGCAGCGTACG
CACAATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGA
AGCCTGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCG
GACAACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGA
TGTCGACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCA
GCTTGCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCAC
ACTGCGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGC
TGCGGCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAG
GAGGGGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAA
GAGGTAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAA
ACTTTTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGT
GTAAATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCA
GGGCAGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTG
TGCATATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTG
AAGGAGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGC
TACCGCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCG
ACGGTCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAG
CTCGACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCT
GCCGGGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCC
GTTGCCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAA
GGGATGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGA
ATGGGGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGG
ACCAGCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGAC
AGCGTACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTAC
GACTGCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCC
AGACAAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGAT
GAGGAAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGA
CATCCTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGA
GGCGCGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAG
AGTGAGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTA
CACGATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGG
ACAAGGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAA
GCGGATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGT
GGTGGGGTTGGAGGTAGGACGGAGGGGGGGGGGAGATGCGATGATGCTTC
AGATTCAACCCAGACCCATATACGTGAATCGGTGTCTGAGCGAGCACCTG
GCATTTCCACTAGTCCCATTCAGCGGTGGGATCCACAGGAAGAGGAAATT
GCACGAGAAGCAGGGATGGGGGGAGAGAGGGAGGGGAGAAGAAGAGGAAA
AAGAGGAGGGAGAGGCCCTTCCGACGGGTTTCGGGGAGTATTTGCCCATG
CCCCAGGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCAAAC
TGCGAGGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAAGCG
TGTCGAGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGGAGG
ACTATGATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGGGAA
GAGTGAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAG
AAAAAGCGAAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCG
GCGGCACCGACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGA
GCAGCAGCATGGGCAACAGTAGTAACAGCAACAACAGCAGCAGCATCAAC
AGCAGCTGCAGCAGCAGTAACAGCAGCGTTCACAAAAGCAGCAGCAATAA
CTAGAGCAGAAGAAGCAGCATCTTAAGGAGCAGCAAATGATGCAAGAGGA
GGAGGAGGAGCAGCAGCAGCAGCGGCAGTACCGGCACATCCCCTTGCATA
ATCGTTCGCGGGCGCAGTCTCCTTAGCAGGCGCAGACAGCAGAATCACCA
GCTTGGCCAGAATGGCTGCCGCTGCCCGGCTGCCGCTGCGACTACTGTGG
CTGCTGCTACCAA

Coding sequence (CDS) from alignment at scaffold_8:461696..464408+

>mRNA_3946 ID=mRNA_3946|Name=jgi.p|Nanoce1779_2|585927|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_8:461696..464408+ (Nannochloropsis oceanica)
ATGGCGTGGGCCCAATCATCTCAACCGCCCAACAAGAACAAGAAGAAGCC
TGCGGGATGCATCGAGGAAACAGGCACGGTGCAGCGATTGCTAGCGGACA
ACAATCCTTGGGTCAAGGTATGGAATGAGGACGCGGAGGGGGAGGATGTC
GACACAGAGATCGTCTTTAGCCCCCAAGGCCGGTATGCCGCTGTCAGCTT
GCAAGGAGGCGGAGTACTCATTTGGGACTTGAGCACGTTGCCTCACACTG
CGCTGCAGCTGGATGTGCCGGCGCACATGCCTGTGCGGACATGCGCTGCG
GCGATCACCCGCCAGCTGAGCAACAATCGAAATCGAAATCGAGGAGGAGG
GGGGCGCAGCAATGCGAGCAACAAAAACAAGGATCGAGGAGACGAAGAGG
TAGATTACGTAATTGCAGGATTGTCTTGGTCCAGTCAGGCGGACAAACTT
TTGGTGACCTACCATCAACAAGGTGGAAGCCCATCGTCGTATTTGTGTAA
ATGGAACATTCCGACGGCGGAAGTCGAGGCGCATTGTCACTGTCCAGGGC
AGCTTACTGGTCCTGCTCAAATCTCACCGGTCGATGAGGCCTTGTGTGCA
TATTTTGTGGGGGGGTCTTCATGTCTACGGTTGCAGCGTTTGGGTGAAGG
AGGAGAGGTGCGGGAGAAGGGTTTGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACGCCGAAGGCAGCAGCGCTAACACCACCGCTACC
GCCGCTACTGAGGACCCACGTCTGGGTTTGTGCCTTTTCAGCACCGACGG
TCAGGCTCTGTACTGTGTGTGCGTGCGTGATCGAAGGGTGCTCAAGCTCG
ACGTGTCGACCCTCCAAGAAGAGGGTCGAAGCCCTGACATGCTTCTGCCG
GGACAACGAGTCTTAGTTCAAAAACTTCGTTTGTCTCCCGATGGCCGTTG
CCTATTTGTCTTTACCAACCGGGCGGCTCATTTGATCGAAACGGAAGGGA
TGCGGGCAGCAGAGCCTTTGGGGGATTTCGGAGCGATAAAGGTGGAATGG
GGTTGCTGGAGTGTGGGGCCGGCTAGGAATCAGCAGCAGCAGCAGGACCA
GCGGCAATTGGTTGTAGTGGGTGTACCATGTCCGTTTAATGGGGACAGCG
TACAAGAGGGCTTGTTCGTCTGGCGGGTTCACGGCCTGGATGGTACGACT
GCTGCTGATGCTGCTGCTGCTGATGCTGCTGCTTCCACTGCGGGCCAGAC
AAAGGACGGGGAAAAGAGCGAGGACGAGGACGACGAGGAAGGAGATGAGG
AAGATGAGTCTAACACCGGTGTACCCCTTGTGGATCCCTCTCCTGACATC
CTACCGGGTTTCATTCAAGGTCTCCAAGCTCTGGAGATTTGTCCGAGGCG
CGCTCTCTTGCTGGGGGCGGATTGCCATGGAGGATTGTTCGTGCAGAGTG
AGAGGTTCACGACCGGCTTCCCAGGGCCCATGTATGCGCCAGGGTACACG
ATCTTGGGGAATAACCGGACATACCTCGAAAGGGAGGAAGAGCTGGACAA
GGTGGTAGTACCCGAGGGAGGGGATGGAAAAGGAACGGAGGAAGAAGCGG
ATAGTGAGGCTGCGGTCCCTGATGAGGAAGGGGAGGTGGATGTGGTGGTG
GGGTTGGAGGTAGGACGGAGGGGGGGGGGAGATGCGATGATGCTTCAGAT
TCAACCCAGACCCATATACGTGAATCGGTGTCTGAGCGAGCACCTGGCAT
TTCCACTAGTCCCATTCAGCGGTGGGATCCACAGGAAGAGGAAATTGCAC
GAGAAGCAGGGATGGGGGGAGAGAGGGAGGGGAGAAGAAGAGGAAAAAGA
GGAGGGAGAGGCCCTTCCGACGGGTTTCGGGGAGTATTTGCCCATGCCCC
AGGCGCTTGTCACGTTGGCACGAAAGAAGCGCAAGGCCGAGCAAACTGCG
AGGGAGAAAGAGGGAGGAAAGGAGAGAGGGAGGGGAGGACTAAGCGTGTC
GAGTCAACGATTTAGGGCGGTTGAGACATGGGCAGCCAAGGGGAGGACTA
TGATAAAGCACGCCCTGGCACGAGAATTGGCAGAGAGTGAGGGGAAGAGT
GAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAAAGGGGGGAGAAAA
AGCGAAAGCAAAGGAGGCGGCGGCGGCCAACGCGGCCAAAATAGCGGCGG
CACCGACACGGCAGGAGCTGCAGCAGGAGCAGGAGCAGCAGCGTGAGCAG
CAGCATGGGCAACAGTAG

Synonyms

Publications