jgi.p|Nanoce1779_2|585920, mRNA_3945 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585920
Unique Name	mRNA_3945
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1430
Alignment location	scaffold_8:459761..461724 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586006
Track	FilteredModels2
ProteinId	585920

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:459761..461724 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585920	gene_3945	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585920	mRNA_3945-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3945	CDS_3945	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:459761..461724-
coding sequence from alignment at scaffold_8:459761..461724-

mRNA sequence

>mRNA_3945 ID=mRNA_3945|Name=jgi.p|Nanoce1779_2|585920|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
CGGAAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTT
CATTCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGA
TGCGCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGA
GCTCGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTC
TCGCCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACC
GAGCGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGC
CCATTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGT
CATATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAG
AGCAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAGAAAAATATC
ATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGAAGAAATCGC
GGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAATCAAGAGGG
AAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGCCACGATGAT
AACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACCCAAGATGAA
AAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAGATATGCCCG
TAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCATGGTCGGAG
GAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCCACAGGTGAC
GAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGAACCCGGCGG
ATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTGTTTGGAGGG
GTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAATAAGCATGT
AAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACGAGGATGATG
GAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGTAAGAGGAAG
GCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAAAAAGGCTGC
AGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGAAAGAAGACA
GGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTTCCCCAAGAG
AAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGACGGCGAGTAG
AAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGAATGACATGC
AGGACCCTTCGAACCGTATGAATATTTTGTGTGACGAGACTTTTAAGAGG
ATCTTGGGGGTGGATAGCTGTCATGGATTCAAGATGAACAAATTGCTGGC
TCCTCATTTTCTGGGGCGGGCGTAGAAACG

protein sequence of jgi.p|Nanoce1779_2|585920

>mRNA_3945-protein ID=mRNA_3945-protein|Name=jgi.p|Nanoce1779_2|585920|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MATAQDLEAAIRVILATAKLEDVTQRTLREQLESQFGCGLTEQKNIIKEI
TIRVLVEREEEIAAQETQEKAATKAAIKREVDLVPQHSSDDESHDDNSSE
SDKEIGEIKPKMKKAKREVEEGKEEEDMPVAKKKAGGYNKEQAWSEEMTA
FLGRGYMSRPQVTKHVWDYIKEKDLQNPADRRVILCDPVLKSLFGGVEKI
NMFKMPKAINKHVRHDDREKEEDEDDEDDGENEFDSDDEGDSRKRKASSA
AKAKTEKNKKKAAAAATSVRTKTNVKKEDRNGAPAKQGGGRGFPQEKISK
ELQALIGKETASRNEVVKKLWEHIKANDMQDPSNRMNILCDETFKRILGV
DSCHGFKMNKLLAPHFLGRA*

mRNA from alignment at scaffold_8:459761..461724-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3945 ID=mRNA_3945|Name=jgi.p|Nanoce1779_2|585920|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_8:459761..461724- (Nannochloropsis oceanica)
CGGAAGATGAGATGATGCTCCTCCTGTTGGTGAAGGGGAGGACATGATTT
CATTCAGTAAAAAGCATGGTTGCATACACGTCCGCTCGTGGAAGGAGTGA
TGCGCCCCTGGCTGCCTCGCTCGGCAGTTGTGGGGGCTTGAATGAATCGA
GCTCGCAGGGTTGTGCTCCACACCGCACGCACGCTCTAAACCCAGCTTTC
TCGCCTCCTATTCACACCACCGCCACCACTATCACGGCAAGCGCAGGACC
GAGCGTCTTCTATCCAGGCGTGTCCTAAGTCCAAAGCCCCTCCGCCTCGC
CCATTCAGCCCTATGGCAACTGCCCAGGACCTGGAAGCGGCGATCCGCGT
CATATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCACGCTCCGAG
AGCAGGTACGTAGAGTGGGAGTATAGATATCGATGGGAAGGGGGGGGGCA
TCGTCCTGTTTGCCTTCATTATTTGAACCTCGTAATTTTGTAGACCAATC
TCTGAATCCTGGAGCCACCACACACCACATCACACCATAACGCGCCCCTA
ACGAACCCACATAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAG
AAAAATATCATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGA
AGAAATCGCGGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAA
TCAAGAGGGAAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGC
CACGATGATAACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACC
CAAGATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAG
ATATGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCA
TGGTCGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCC
ACAGGTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGA
ACCCGGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTG
TTTGGAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAA
TAAGCATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACG
AGGATGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGT
AAGAGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAA
AAAGGCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGA
AAGAAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTT
CCCCAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGAC
GGCGAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGA
ATGACATGCAGGACCCTTCGGTAGGTTTTTGGTTTGTGTTATACTATAAT
AGTTTATGTTATTATTATATTATGATTGTGGTAAATTATACAAGGTACGT
GGATTTGTGGCATAGATTTGGGGGGGGCTGGAGGTTGTTTCTTTTTGACG
CGTGTCATGTATGTGCCATGTGACGTGCGAAAGGGTTATGGGAGTATAGC
GGGCGAAGCCAATCACACGCGAGAAGCATCCTTCGGTGTTTCTTAGGTTT
GAATAGATGTGGGAATAAAATGGTTTTACGTGCTTATATTATGTATTTGG
AGCTTTATATGTATGTTGCCTTTGTCTTTCCCTTTTTTAAACTTGTCTCA
AATGCCTCCTAACATCCTCCTCCCTCTTCTTCCACATCTTCACAGAACCG
TATGAATATTTTGTGTGACGAGACTTTTAAGAGGATCTTGGGGGTGGATA
GCTGTCATGGATTCAAGATGAACAAATTGCTGGCTCCTCATTTTCTGGGG
CGGGCGTAGAAACG

Coding sequence (CDS) from alignment at scaffold_8:459761..461724-

>mRNA_3945 ID=mRNA_3945|Name=jgi.p|Nanoce1779_2|585920|organism=Nannochloropsis oceanica|type=CDS|length=3339bp|location=Sequence derived from alignment at scaffold_8:459761..461724- (Nannochloropsis oceanica)
AACCGTATGAATATTTTGTGTGACGAGACTTTTAAGAGGATCTTGGGGGT
GGATAGCTGTCATGGATTCAAGATGAACAAATTGCTGGCTCCTCATTTTC
TGGGGCGGGCGTAGCTCGAAAGCCAGTTCGGATGCGGGCTGACCGAACAG
AAAAATATCATCAAAGAGATCACCATCCGCGTCTTGGTCGAGCGAGAGGA
AGAAATCGCGGCACAAGAGACTCAAGAAAAGGCGGCTACCAAGGCGGCAA
TCAAGAGGGAAGTCGATCTGGTCCCCCAACACTCGAGCGACGACGAGAGC
CACGATGATAACAGCAGCGAGAGCGACAAGGAAATAGGAGAGATAAAACC
CAAGATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGCAAGGAGGAGGAAG
ATATGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAATAAGGAGCAGGCA
TGGTCGGAGGAAATGACAGCGTTCTTAGGGAGGGGATACATGTCGCGCCC
ACAGGTGACGAAGCATGTGTGGGATTATATCAAGGAGAAAGATTTGCAGA
ACCCGGCGGATCGACGTGTGATTTTGTGTGACCCGGTTTTGAAGAGTTTG
TTTGGAGGGGTGGAGAAGATAAATATGTTTAAGATGCCCAAGGCAATCAA
TAAGCATGTAAGGCATGACGATAGGGAGAAAGAAGAAGATGAGGACGACG
AGGATGATGGAGAGAATGAGTTCGACTCGGATGACGAGGGCGACTCGCGT
AAGAGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGGAGAAGAATAAGAA
AAAGGCTGCAGCAGCGGCGACATCAGTCAGGACGAAAACGAATGTCAAGA
AAGAAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGGAGGGAGAGGATTT
CCCCAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGATTGGGAAGGAGAC
GGCGAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAGCATATCAAGGCGA
ATGACATGCAGGACCCTTCGATGGCAACTGCCCAGGACCTGGAAGCGGCG
ATCCGCGTCATATTGGCTACGGCCAAGCTGGAGGATGTGACGCAGCGCAC
GCTCCGAGAGCAGAACCGTATGAATATTTTGTGTGACGAGACTTTTAAGA
GGATCTTGGGGGTGGATAGCTGTCATGGATTCAAGATGAACAAATTGCTG
GCTCCTCATTTTCTGGGGCGGGCGTAGCTCGAAAGCCAGTTCGGATGCGG
GCTGACCGAACAGAAAAATATCATCAAAGAGATCACCATCCGCGTCTTGG
TCGAGCGAGAGGAAGAAATCGCGGCACAAGAGACTCAAGAAAAGGCGGCT
ACCAAGGCGGCAATCAAGAGGGAAGTCGATCTGGTCCCCCAACACTCGAG
CGACGACGAGAGCCACGATGATAACAGCAGCGAGAGCGACAAGGAAATAG
GAGAGATAAAACCCAAGATGAAAAAGGCGAAGCGTGAGGTGGAGGAGGGC
AAGGAGGAGGAAGATATGCCCGTAGCCAAGAAGAAGGCCGGGGGTTACAA
TAAGGAGCAGGCATGGTCGGAGGAAATGACAGCGTTCTTAGGGAGGGGAT
ACATGTCGCGCCCACAGGTGACGAAGCATGTGTGGGATTATATCAAGGAG
AAAGATTTGCAGAACCCGGCGGATCGACGTGTGATTTTGTGTGACCCGGT
TTTGAAGAGTTTGTTTGGAGGGGTGGAGAAGATAAATATGTTTAAGATGC
CCAAGGCAATCAATAAGCATGTAAGGCATGACGATAGGGAGAAAGAAGAA
GATGAGGACGACGAGGATGATGGAGAGAATGAGTTCGACTCGGATGACGA
GGGCGACTCGCGTAAGAGGAAGGCGAGCTCGGCGGCTAAGGCCAAAACGG
AGAAGAATAAGAAAAAGGCTGCAGCAGCGGCGACATCAGTCAGGACGAAA
ACGAATGTCAAGAAAGAAGACAGGAATGGGGCGCCAGCTAAGCAGGGAGG
AGGGAGAGGATTTCCCCAAGAGAAAATTTCGAAGGAGCTTCAAGCGTTGA
TTGGGAAGGAGACGGCGAGTAGAAATGAGGTGGTGAAGAAGCTCTGGGAG
CATATCAAGGCGAATGACATGCAGGACCCTTCGATGGCAACTGCCCAGGA
CCTGGAAGCGGCGATCCGCGTCATATTGGCTACGGCCAAGCTGGAGGATG
TGACGCAGCGCACGCTCCGAGAGCAGAACCGTATGAATATTTTGTGTGAC
GAGACTTTTAAGAGGATCTTGGGGGTGGATAGCTGTCATGGATTCAAGAT
GAACAAATTGCTGGCTCCTCATTTTCTGGGGCGGGCGTAGCTCGAAAGCC
AGTTCGGATGCGGGCTGACCGAACAGAAAAATATCATCAAAGAGATCACC
ATCCGCGTCTTGGTCGAGCGAGAGGAAGAAATCGCGGCACAAGAGACTCA
AGAAAAGGCGGCTACCAAGGCGGCAATCAAGAGGGAAGTCGATCTGGTCC
CCCAACACTCGAGCGACGACGAGAGCCACGATGATAACAGCAGCGAGAGC
GACAAGGAAATAGGAGAGATAAAACCCAAGATGAAAAAGGCGAAGCGTGA
GGTGGAGGAGGGCAAGGAGGAGGAAGATATGCCCGTAGCCAAGAAGAAGG
CCGGGGGTTACAATAAGGAGCAGGCATGGTCGGAGGAAATGACAGCGTTC
TTAGGGAGGGGATACATGTCGCGCCCACAGGTGACGAAGCATGTGTGGGA
TTATATCAAGGAGAAAGATTTGCAGAACCCGGCGGATCGACGTGTGATTT
TGTGTGACCCGGTTTTGAAGAGTTTGTTTGGAGGGGTGGAGAAGATAAAT
ATGTTTAAGATGCCCAAGGCAATCAATAAGCATGTAAGGCATGACGATAG
GGAGAAAGAAGAAGATGAGGACGACGAGGATGATGGAGAGAATGAGTTCG
ACTCGGATGACGAGGGCGACTCGCGTAAGAGGAAGGCGAGCTCGGCGGCT
AAGGCCAAAACGGAGAAGAATAAGAAAAAGGCTGCAGCAGCGGCGACATC
AGTCAGGACGAAAACGAATGTCAAGAAAGAAGACAGGAATGGGGCGCCAG
CTAAGCAGGGAGGAGGGAGAGGATTTCCCCAAGAGAAAATTTCGAAGGAG
CTTCAAGCGTTGATTGGGAAGGAGACGGCGAGTAGAAATGAGGTGGTGAA
GAAGCTCTGGGAGCATATCAAGGCGAATGACATGCAGGACCCTTCGATGG
CAACTGCCCAGGACCTGGAAGCGGCGATCCGCGTCATATTGGCTACGGCC
AAGCTGGAGGATGTGACGCAGCGCACGCTCCGAGAGCAG

Synonyms

Publications