jgi.p|Nanoce1779_2|585909, mRNA_3944 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585909
Unique NamemRNA_3944
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length287
Alignment locationscaffold_8:456980..457284 -

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Properties
Property NameValue
TranscriptId585995
TrackFilteredModels2
ProteinId585909
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:456980..457284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585909gene_3944Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585909mRNA_3944-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3944CDS_3944Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3944 ID=mRNA_3944|Name=jgi.p|Nanoce1779_2|585909|organism=Nannochloropsis oceanica|type=mRNA|length=287bp
GACAGAGTAATAAGGTTCTGTATGGTCGAGGCTAGTGCTGCTAATGCGGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGGTGGACGATAGACGATGGA
AGCAAGGCCACAGGGAAACTGCACCGCTTCCAGAAAGTCGCTCGTTTGAC
GAAAGAACTTTCCTGTCGAGGTGCTGTGTGGACAGTGTGGGTTTGTGCCC
ATAATTCATTTGGTCAGGCGGACATGGCTGCGAAGGAAGAGGAGGGGTGG
GGAGGCGAATAACCAACGGCGCGGTCTGTGCGGCTGG
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protein sequence of jgi.p|Nanoce1779_2|585909

>mRNA_3944-protein ID=mRNA_3944-protein|Name=jgi.p|Nanoce1779_2|585909|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MRLLLLLLLLLLGWTIDDGSKATGKLHRFQKVARLTKELSCRGAVWTVWV
CAHNSFGQADMAAKEEEGWGGE*
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mRNA from alignment at scaffold_8:456980..457284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3944 ID=mRNA_3944|Name=jgi.p|Nanoce1779_2|585909|organism=Nannochloropsis oceanica|type=mRNA|length=305bp|location=Sequence derived from alignment at scaffold_8:456980..457284- (Nannochloropsis oceanica)
GACAGAGTAATAAGGTTCTGTATGGTCGAGGCTAGTGCTGCTAATGCGGC
AGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGG
TGGACGATAGACGATGGAAGCAAGGCCACAGGGAAACTGCACCGCTTCCA
GAAAGTCGCTCGTTTGACGAAAGAACTTTCCTGTCGAGGTGCTGTGTGGA
CAGTGTGGGTTTGTGCCCATAATTCATTTGGTCAGGCGGACATGGCTGCG
AAGGAAGAGGAGGGGTGGGGAGGCGAATAACCAACGGCGCGGTCTGTGCG
GCTGG
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Coding sequence (CDS) from alignment at scaffold_8:456980..457284-

>mRNA_3944 ID=mRNA_3944|Name=jgi.p|Nanoce1779_2|585909|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_8:456980..457284- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTGGGTGGACGATAGACGATG
GAAGCAAGGCCACAGGGAAACTGCACCGCTTCCAGAAAGTCGCTCGTTTG
ACGAAAGAACTTTCCTGTCGAGGTGCTGTGTGGACAGTGTGGGTTTGTGC
CCATAATTCATTTGGTCAGGCGGACATGGCTGCGAAGGAAGAGGAGGGGT
GGGGAGGCGAATAAATGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTT
GGGTGGACGATAGACGATGGAAGCAAGGCCACAGGGAAACTGCACCGCTT
CCAGAAAGTCGCTCGTTTGACGAAAGAACTTTCCTGTCGAGGTGCTGTGT
GGACAGTGTGGGTTTGTGCCCATAATTCATTTGGTCAGGCGGACATGGCT
GCGAAGGAAGAGGAGGGGTGGGGAGGCGAATAAATGCG
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Synonyms
Publications