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Properties
| Property Name | Value |
|---|
| TranscriptId | 670253 |
| Track | FilteredModels2 |
| ProteinId | 670167 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:454220..456893 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3943 ID=mRNA_3943|Name=jgi.p|Nanoce1779_2|670167|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp
GCCCACCGCATTATTGAAGTCGCATTTGCTGTCGCCCGGGCCAGCTCCCA
ATAAATATATAAACTAACCCGCAAAGGAGCAACTTCTATAACGAATGGCC
CCTCCCTCGAGCCGCCGCCTCTTCCTAGGCCTCCTCCTCTTGTCACTTTT
TCAGGGTCTCCAGTCTCTGAAGGATTACCACAACATCTTCTGTGGCAAGG
AAAATTGCTATGACGTGCTTGGGGTGCCGCAGGAAGCCGAGCCCTCCGCT
ATTCGCCGCGCCTTCCGTCAGCTCAGCCTCGTCCATCATCCCGACAAGGG
TGGAAACCCCAAGATTTTCCAAGCCCTGAACAAGGCCTACCAGGTGGTGG
GTGATGATGAGCAACGGACACTTTACAACACCTGCCTGGGAAATCAAACA
TTTTATGTGGAGAAATACGGGCATTACTATCTCCAGCAATACTACCCGAA
GAGTAACACGCTTGCCGTCATTCTGTTTTTGTTGTTTGTCTTCTCTATAA
TGGGTCCCGTGATTCAGCAAAATAACTATAAGTATGCGTGTGAGATGCTT
GCCTCGGCCGCGATCCGAAACAAGGGCCTGCACGAAGGGGGGTCGAGGGA
GACGATGGAGATTAGAAGGAGGGCACTAGAGCAGGTTAAGGCCAAGAAGA
TGGCCAACAGTAGTAGTAAGGCAGGGGAGGAAGGAGGAGGAGGAGGAGGA
GGGGCAGGGATCCCGACTCCGAGTGGCAAGGTGGGCAAAAGGAAGAATAA
AGGAGCGCAAGGAGGGAGTGGCGGGAACAGCAGTAGCAGCAGTAGCAGCA
GTAGTGGTGGTGGAGGAGGCAAGGAGGAAGATCCTGAATTTGTGGCTGCT
GTGAAGGCGATTGTGTCAGAGATGGACATACAAGGGAATTATCGAAAGTG
GGAGTGGGGGGATGTTTTGGCGGTGAAACTGGCGAGGCTGCCCCTGTTTG
TTTTGCAGGGAGGGCTATTTCAAGTCAAGTGGTGGTTCAATCACACCTAT
CGGGGGCTGCCTTTGTCGACGGCGGAGGAGGCATACATGGCTTGTCGGAT
GGTAGGGAAGGGGAGGTGGGAAGGGTTGCAGGAGGAGGAGAAGGAGGAGC
TAGTAGAGGGGAAGGTGTGGGAGGTGAAAGGGTGGTCGTTTGCCGATTGG
ATGGAGGAGAAGGAGATTAAGAAGATGCCCCCGAATGTACGGAAGAATTA
TTTAAGGCATAAGCGGCGGGTGATGGCAGATGGGCCGGGGGATTTGGTGA
AGGATTAATACAAACGGGAGAAGTATTGGGGGAGACGGAACACAGGTAAT
GGAAGGAGGGAGGGAAGGAAAGGAGTAGGCAGAAGCGAAAAAGGATCAGG
GAAAGGAAAAAAGAGGAGGGACAAAGCACACCTCCGAAATTCGACGAGAA
GTATACAACAAGGAAAGGAAAATAGAAACCAAGCGCTCTTTCGAAATCTC
TCACTGACGAAAGAGGGACCTCTCATTCGTAAAAGCACGCCAATATTTAT
CAGGGGTTGAAACTCCACCACATCAACAGCTAGAGCCGAAACCGCGCGTA
AAGCTCTTTCTTTTTCGCTTAAATAGGAAAATCGAAGAGGCAGCTAATGG
TATAGGAAGGGGAAAAGGAAGAAGAGGAGGTGATGTGCAGCAAAAAACAT
TTTCTTTGTTTGCGTTTTTTCGTCTTCATCCTCCAACTCAACCTCCTGTC
TTCGTCCTTTTCTTCTTATTCTTGGTTGTTGCTATTGCAATTTAGATACC
AATTTTCTGGCGCTGCCAGCTGGTTGTCCTTCTATTTTGGTGCTTTACCC
CAGCATGATTGCCGTATTCTTCGTCGTCATCTTTTTCCTTGTCTTTTGTT
TCATTGGGAGGGGATTCTGAGATTTCATTTTCTGCTTTCTCGAGATGAAA
TAAATATTTAAAGCGGTCAATGTTGGGTTGGAAGAGATGGTGGTGGTAGT
TGGTGGTTGGGATATGTGTGTAGAGCGAAAAAGATGAGGAGGTGGAGGAG
AAGGAGGAGGAGGTGGTGGTGGAGGAGAAGGAAGAGGGGGTGGTGGAGGA
GGAGATTATGGAGCACGTATCTCTCCACAAATTGACATACGGTCATAGAC
ACAGACACACATATAGACACAAACTATTGGTGTTGTTGTTTTTGTTGTTG
CTGTTGCTGTTGCTGTTGCTGCTGCTGCTGCTGTTGTTGTTGGCAATGAT
TATGGTGGTGTTGAGAGGAAGGACCAAAGGAATGCGCGGCATGCATGAAG
TCATTCCTGCCATGGAGGTGCAGCGGTGTGCTGCTTCCATCAAAGCAATC
ATCAAAATATACAGGAGCACCAGCAGCAGAAGGAGGCCGGTGTGAAGACG
GAGGGAAAAGGTAGGTTTGTGGAGAGCAAGATCCTCCAGCAGCAGCAGCA
GCAGCGACAGCGGCAGCAGCAGCAGCGACGGTAGCAGAACGCCCCGAGTA
GTCCATCCCTGCTAGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|670167 >mRNA_3943-protein ID=mRNA_3943-protein|Name=jgi.p|Nanoce1779_2|670167|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MAPPSSRRLFLGLLLLSLFQGLQSLKDYHNIFCGKENCYDVLGVPQEAEP
SAIRRAFRQLSLVHHPDKGGNPKIFQALNKAYQVVGDDEQRTLYNTCLGN
QTFYVEKYGHYYLQQYYPKSNTLAVILFLLFVFSIMGPVIQQNNYKYACE
MLASAAIRNKGLHEGGSRETMEIRRRALEQVKAKKMANSSSKAGEEGGGG
GGGAGIPTPSGKVGKRKNKGAQGGSGGNSSSSSSSSSGGGGGKEEDPEFV
AAVKAIVSEMDIQGNYRKWEWGDVLAVKLARLPLFVLQGGLFQVKWWFNH
TYRGLPLSTAEEAYMACRMVGKGRWEGLQEEEKEELVEGKVWEVKGWSFA
DWMEEKEIKKMPPNVRKNYLRHKRRVMADGPGDLVKD* back to topmRNA from alignment at scaffold_8:454220..456893- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3943 ID=mRNA_3943|Name=jgi.p|Nanoce1779_2|670167|organism=Nannochloropsis oceanica|type=mRNA|length=2674bp|location=Sequence derived from alignment at scaffold_8:454220..456893- (Nannochloropsis oceanica)
GCCCACCGCATTATTGAAGTCGCATTTGCTGTCGCCCGGGCCAGCTCCCA
ATAAATATATAAACTAACCCGCAAAGGAGCAACTTCTATAACGAATGGCC
CCTCCCTCGAGCCGCCGCCTCTTCCTAGGCCTCCTCCTCTTGTCACTTTT
TCAGGGTCTCCAGTCTCTGAAGGATTACCACAACATCTTCTGTGGCAAGG
AAAATTGCTATGACGTGCTTGGGGTGCCGCAGGTGAGTTTCAGCTCCTGT
CTGAAGGGTGATGATGCTGCTGTCATTCCTTCGTCGTGTGTGTGCGCGCG
CATCTCTCTGATTTCAAACTGGTGCGCGACGGACACCTCACTTGTATGAT
GTCCGGGAGGTCTTCCGTCTCTTATTCTCTCAACAGTATCCCTTTCCCTC
CTTCCTCCCTCCCACCACGCTCCCTCCCTGCCCAAAAGGAAGCCGAGCCC
TCCGCTATTCGCCGCGCCTTCCGTCAGCTCAGCCTCGTCCATCATCCCGA
CAAGGGTGGAAACCCCAAGATTTTCCAAGCCCTGAACAAGGCCTACCAGG
TGGTGGGTGATGATGAGCAACGGACACTTTACAACACCTGCCTGGGAAAT
CAAACATTTTATGTGGAGAAATACGGGCATTACTATCTCCAGCAATACTA
CCCGAAGAGTAACACGCTTGCCGTCATTCTGTTTTTGTTGTTTGTCTTCT
CTATAATGGGTCCCGTGATTCAGCAAAATAACTATAAGTATGCGTGTGAG
ATGCTTGCCTCGGCCGCGATCCGAAACAAGGGCCTGCACGAAGGGGGGTC
GAGGGAGACGATGGAGATTAGAAGGAGGGCACTAGAGCAGGTTAAGGCCA
AGAAGATGGCCAACAGTAGTAGTAAGGCAGGGGAGGAAGGAGGAGGAGGA
GGAGGAGGGGCAGGGATCCCGACTCCGAGTGGCAAGGTGGGCAAAAGGAA
GAATAAAGGAGCGCAAGGAGGGAGTGGCGGGAACAGCAGTAGCAGCAGTA
GCAGCAGTAGTGGTGGTGGAGGAGGCAAGGAGGAAGATCCTGAATTTGTG
GCTGCTGTGAAGGCGATTGTGTCAGAGATGGACATACAAGGGAATTATCG
AAAGTGGGAGTGGGGGGATGTTTTGGCGGTGAAACTGGCGAGGCTGCCCC
TGTTTGTTTTGCAGGGAGGGCTATTTCAAGTCAAGTGGTGGTTCAATCAC
ACCTATCGGGGGCTGCCTTTGTCGACGGCGGAGGAGGCATACATGGCTTG
TCGGATGGTAGGGAAGGGGAGGTGGGAAGGGTTGCAGGAGGAGGAGAAGG
AGGAGCTAGTAGAGGGGAAGGTGTGGGAGGTGAAAGGGTGGTCGTTTGCC
GATTGGATGGAGGAGAAGGAGATTAAGAAGATGCCCCCGAATGTACGGAA
GAATTATTTAAGGCATAAGCGGCGGGTGATGGCAGATGGGCCGGGGGATT
TGGTGAAGGATTAATACAAACGGGAGAAGTATTGGGGGAGACGGAACACA
GGTAATGGAAGGAGGGAGGGAAGGAAAGGAGTAGGCAGAAGCGAAAAAGG
ATCAGGGAAAGGAAAAAAGAGGAGGGACAAAGCACACCTCCGAAATTCGA
CGAGAAGTATACAACAAGGAAAGGAAAATAGAAACCAAGCGCTCTTTCGA
AATCTCTCACTGACGAAAGAGGGACCTCTCATTCGTAAAAGCACGCCAAT
ATTTATCAGGGGTTGAAACTCCACCACATCAACAGCTAGAGCCGAAACCG
CGCGTAAAGCTCTTTCTTTTTCGCTTAAATAGGAAAATCGAAGAGGCAGC
TAATGGTATAGGAAGGGGAAAAGGAAGAAGAGGAGGTGATGTGCAGCAAA
AAACATTTTCTTTGTTTGCGTTTTTTCGTCTTCATCCTCCAACTCAACCT
CCTGTCTTCGTCCTTTTCTTCTTATTCTTGGTTGTTGCTATTGCAATTTA
GATACCAATTTTCTGGCGCTGCCAGCTGGTTGTCCTTCTATTTTGGTGCT
TTACCCCAGCATGATTGCCGTATTCTTCGTCGTCATCTTTTTCCTTGTCT
TTTGTTTCATTGGGAGGGGATTCTGAGATTTCATTTTCTGCTTTCTCGAG
ATGAAATAAATATTTAAAGCGGTCAATGTTGGGTTGGAAGAGATGGTGGT
GGTAGTTGGTGGTTGGGATATGTGTGTAGAGCGAAAAAGATGAGGAGGTG
GAGGAGAAGGAGGAGGAGGTGGTGGTGGAGGAGAAGGAAGAGGGGGTGGT
GGAGGAGGAGATTATGGAGCACGTATCTCTCCACAAATTGACATACGGTC
ATAGACACAGACACACATATAGACACAAACTATTGGTGTTGTTGTTTTTG
TTGTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGCTGCTGTTGTTGTTGGC
AATGATTATGGTGGTGTTGAGAGGAAGGACCAAAGGAATGCGCGGCATGC
ATGAAGTCATTCCTGCCATGGAGGTGCAGCGGTGTGCTGCTTCCATCAAA
GCAATCATCAAAATATACAGGAGCACCAGCAGCAGAAGGAGGCCGGTGTG
AAGACGGAGGGAAAAGGTAGGTTTGTGGAGAGCAAGATCCTCCAGCAGCA
GCAGCAGCAGCGACAGCGGCAGCAGCAGCAGCGACGGTAGCAGAACGCCC
CGAGTAGTCCATCCCTGCTAGTAG back to topCoding sequence (CDS) from alignment at scaffold_8:454220..456893- >mRNA_3943 ID=mRNA_3943|Name=jgi.p|Nanoce1779_2|670167|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_8:454220..456893- (Nannochloropsis oceanica)
GAAGCCGAGCCCTCCGCTATTCGCCGCGCCTTCCGTCAGCTCAGCCTCGT
CCATCATCCCGACAAGGGTGGAAACCCCAAGATTTTCCAAGCCCTGAACA
AGGCCTACCAGGTGGTGGGTGATGATGAGCAACGGACACTTTACAACACC
TGCCTGGGAAATCAAACATTTTATGTGGAGAAATACGGGCATTACTATCT
CCAGCAATACTACCCGAAGAGTAACACGCTTGCCGTCATTCTGTTTTTGT
TGTTTGTCTTCTCTATAATGGGTCCCGTGATTCAGCAAAATAACTATAAG
TATGCGTGTGAGATGCTTGCCTCGGCCGCGATCCGAAACAAGGGCCTGCA
CGAAGGGGGGTCGAGGGAGACGATGGAGATTAGAAGGAGGGCACTAGAGC
AGGTTAAGGCCAAGAAGATGGCCAACAGTAGTAGTAAGGCAGGGGAGGAA
GGAGGAGGAGGAGGAGGAGGGGCAGGGATCCCGACTCCGAGTGGCAAGGT
GGGCAAAAGGAAGAATAAAGGAGCGCAAGGAGGGAGTGGCGGGAACAGCA
GTAGCAGCAGTAGCAGCAGTAGTGGTGGTGGAGGAGGCAAGGAGGAAGAT
CCTGAATTTGTGGCTGCTGTGAAGGCGATTGTGTCAGAGATGGACATACA
AGGGAATTATCGAAAGTGGGAGTGGGGGGATGTTTTGGCGGTGAAACTGG
CGAGGCTGCCCCTGTTTGTTTTGCAGGGAGGGCTATTTCAAGTCAAGTGG
TGGTTCAATCACACCTATCGGGGGCTGCCTTTGTCGACGGCGGAGGAGGC
ATACATGGCTTGTCGGATGGTAGGGAAGGGGAGGTGGGAAGGGTTGCAGG
AGGAGGAGAAGGAGGAGCTAGTAGAGGGGAAGGTGTGGGAGGTGAAAGGG
TGGTCGTTTGCCGATTGGATGGAGGAGAAGGAGATTAAGAAGATGCCCCC
GAATGTACGGAAGAATTATTTAAGGCATAAGCGGCGGGTGATGGCAGATG
GGCCGGGGGATTTGGTGAAGGATTAAATGGCCCCTCCCTCGAGCCGCCGC
CTCTTCCTAGGCCTCCTCCTCTTGTCACTTTTTCAGGGTCTCCAGTCTCT
GAAGGATTACCACAACATCTTCTGTGGCAAGGAAAATTGCTATGACGTGC
TTGGGGTGCCGCAGGAAGCCGAGCCCTCCGCTATTCGCCGCGCCTTCCGT
CAGCTCAGCCTCGTCCATCATCCCGACAAGGGTGGAAACCCCAAGATTTT
CCAAGCCCTGAACAAGGCCTACCAGGTGGTGGGTGATGATGAGCAACGGA
CACTTTACAACACCTGCCTGGGAAATCAAACATTTTATGTGGAGAAATAC
GGGCATTACTATCTCCAGCAATACTACCCGAAGAGTAACACGCTTGCCGT
CATTCTGTTTTTGTTGTTTGTCTTCTCTATAATGGGTCCCGTGATTCAGC
AAAATAACTATAAGTATGCGTGTGAGATGCTTGCCTCGGCCGCGATCCGA
AACAAGGGCCTGCACGAAGGGGGGTCGAGGGAGACGATGGAGATTAGAAG
GAGGGCACTAGAGCAGGTTAAGGCCAAGAAGATGGCCAACAGTAGTAGTA
AGGCAGGGGAGGAAGGAGGAGGAGGAGGAGGAGGGGCAGGGATCCCGACT
CCGAGTGGCAAGGTGGGCAAAAGGAAGAATAAAGGAGCGCAAGGAGGGAG
TGGCGGGAACAGCAGTAGCAGCAGTAGCAGCAGTAGTGGTGGTGGAGGAG
GCAAGGAGGAAGATCCTGAATTTGTGGCTGCTGTGAAGGCGATTGTGTCA
GAGATGGACATACAAGGGAATTATCGAAAGTGGGAGTGGGGGGATGTTTT
GGCGGTGAAACTGGCGAGGCTGCCCCTGTTTGTTTTGCAGGGAGGGCTAT
TTCAAGTCAAGTGGTGGTTCAATCACACCTATCGGGGGCTGCCTTTGTCG
ACGGCGGAGGAGGCATACATGGCTTGTCGGATGGTAGGGAAGGGGAGGTG
GGAAGGGTTGCAGGAGGAGGAGAAGGAGGAGCTAGTAGAGGGGAAGGTGT
GGGAGGTGAAAGGGTGGTCGTTTGCCGATTGGATGGAGGAGAAGGAGATT
AAGAAGATGCCCCCGAATGTACGGAAGAATTATTTAAGGCATAAGCGGCG
GGTGATGGCAGATGGGCCGGGGGATTTGGTGAAGGATTAAATGGCCCCTC
CCTCGAGCCGCCGCCTCTTCCTAGGCCTCCTCCTCTTGTCACTTTTTCAG
GGTCTCCAGTCTCTGAAGGATTACCACAACATCTTCTGTGGCAAGGAAAA
TTGCTATGACGTGCTTGGGGTGCCGCAG back to top
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