jgi.p|Nanoce1779_2|418921, mRNA_3942 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|418921
Unique NamemRNA_3942
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length545
Alignment locationscaffold_8:454698..455242 -

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Properties
Property NameValue
TranscriptId419007
TrackFilteredModels2
ProteinId418921
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:454698..455242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|418921gene_3942Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|418921mRNA_3942-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3942CDS_3942Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3942 ID=mRNA_3942|Name=jgi.p|Nanoce1779_2|418921|organism=Nannochloropsis oceanica|type=mRNA|length=545bp
ATCTCTCACTGACGAAAGAGGGACCTCTCATTCGTAAAAGCACGCCAATA
TTTATCAGGGGTTGAAACTCCACCACATCAACAGCTAGAGCCGAAACCGC
GCGTAAAGCTCTTTCTTTTTCGCTTAAATAGGAAAATCGAAGAGGCAGCT
AATGGTATAGGAAGGGGAAAAGGAAGAAGAGGAGGTGATGTGCAGCAAAA
AACATTTTCTTTGTTTGCGTTTTTTCGTCTTCATCCTCCAACTCAACCTC
CTGTCTTCGTCCTTTTCTTCTTATTCTTGGTTGTTGCTATTGCAATTTAG
ATACCAATTTTCTGGCGCTGCCAGCTGGTTGTCCTTCTATTTTGGTGCTT
TACCCCAGCATGATTGCCGTATTCTTCGTCGTCATCTTTTTCCTTGTCTT
TTGTTTCATTGGGAGGGGATTCTGAGATTTCATTTTCTGCTTTCTCGAGA
TGAAATAAATATTTAAAGCGGTCAATGTTGGGTTGGAAGAGATGGTGGTG
GTAGTTGGTGGTTGGGATATGTGTGTAGAGCGAAAAAGATGAGGA
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protein sequence of jgi.p|Nanoce1779_2|418921

>mRNA_3942-protein ID=mRNA_3942-protein|Name=jgi.p|Nanoce1779_2|418921|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MCSKKHFLCLRFFVFILQLNLLSSSFSSYSWLLLLQFRYQFSGAASWLSF
YFGALPQHDCRILRRHLFPCLLFHWEGILRFHFLLSRDEINI*
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mRNA from alignment at scaffold_8:454698..455242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3942 ID=mRNA_3942|Name=jgi.p|Nanoce1779_2|418921|organism=Nannochloropsis oceanica|type=mRNA|length=545bp|location=Sequence derived from alignment at scaffold_8:454698..455242- (Nannochloropsis oceanica)
ATCTCTCACTGACGAAAGAGGGACCTCTCATTCGTAAAAGCACGCCAATA
TTTATCAGGGGTTGAAACTCCACCACATCAACAGCTAGAGCCGAAACCGC
GCGTAAAGCTCTTTCTTTTTCGCTTAAATAGGAAAATCGAAGAGGCAGCT
AATGGTATAGGAAGGGGAAAAGGAAGAAGAGGAGGTGATGTGCAGCAAAA
AACATTTTCTTTGTTTGCGTTTTTTCGTCTTCATCCTCCAACTCAACCTC
CTGTCTTCGTCCTTTTCTTCTTATTCTTGGTTGTTGCTATTGCAATTTAG
ATACCAATTTTCTGGCGCTGCCAGCTGGTTGTCCTTCTATTTTGGTGCTT
TACCCCAGCATGATTGCCGTATTCTTCGTCGTCATCTTTTTCCTTGTCTT
TTGTTTCATTGGGAGGGGATTCTGAGATTTCATTTTCTGCTTTCTCGAGA
TGAAATAAATATTTAAAGCGGTCAATGTTGGGTTGGAAGAGATGGTGGTG
GTAGTTGGTGGTTGGGATATGTGTGTAGAGCGAAAAAGATGAGGA
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Coding sequence (CDS) from alignment at scaffold_8:454698..455242-

>mRNA_3942 ID=mRNA_3942|Name=jgi.p|Nanoce1779_2|418921|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_8:454698..455242- (Nannochloropsis oceanica)
ATGTGCAGCAAAAAACATTTTCTTTGTTTGCGTTTTTTCGTCTTCATCCT
CCAACTCAACCTCCTGTCTTCGTCCTTTTCTTCTTATTCTTGGTTGTTGC
TATTGCAATTTAGATACCAATTTTCTGGCGCTGCCAGCTGGTTGTCCTTC
TATTTTGGTGCTTTACCCCAGCATGATTGCCGTATTCTTCGTCGTCATCT
TTTTCCTTGTCTTTTGTTTCATTGGGAGGGGATTCTGAGATTTCATTTTC
TGCTTTCTCGAGATGAAATAAATATTTAA
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Synonyms
Publications