jgi.p|Nanoce1779_2|629636, mRNA_3941 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629636
Unique Name	mRNA_3941
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1184
Alignment location	scaffold_8:452428..454263 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629722
Track	FilteredModels2
ProteinId	629636

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:452428..454263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629636	gene_3941	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629636	mRNA_3941-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3941	CDS_3941	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:452428..454263+
coding sequence from alignment at scaffold_8:452428..454263+

mRNA sequence

>mRNA_3941 ID=mRNA_3941|Name=jgi.p|Nanoce1779_2|629636|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
GAAATCAGGTTTTGCGGCTATTGGCCTCATTCCAGCAGGCGCGCTGCCTC
CGCCAGACTTCAGTTCCCCACGTATACATGCGCACCGACGAGGTCACTCC
GTACCTTGAAAGCGTTACACCAGAGAGCCCAACAGCTCCCATGTGCCATC
CTTGTCTCATCATTTGTCCTTTTCCCCTGTCTATCCCTTATTTCAATCTA
CAACAACAGACAGAACCACGCGTCATCAGGAAAGACCCATCGTCGCACCC
ATGGAGCACACACAACCCCAACAAGTGCAAGATAAATCCCCAAATTCCTG
TGAAGGAAGCAATCAGATCGATGTTGTCCAAGGACAACAGGATGTGGGGC
AAATAGAGAATGATTTGACCGCCCTGTTGCGGCGGGCCATGTTAGAGACT
GGTAAGGACCCCAGCATGCTGCTGCCGGCCGCCGGGATGCCGACGCCCAA
GCAACAGCACCTGCAGCCCTCCCAGAGACCAGCTCGCCAGGCATCAGCCT
CATCACAAACACAACAAACCGACGAGGAAGTGTGTGGGAAGAACCGACGG
GCCTGGACCGATAAGGAGGACGAGTGCATCTTGGAGCTGGTTTACGAGCA
CGGCACGCGGAGCTGGACAGCGATTGCTCAAGGACTGGCCATCAGGGCGC
CGGGAATGGATCGTACGGGCAAGCAATGTCGCACGCGATGGTTGAATCAT
TTAGACCCGGCCATCAACAAGTCCCCTTGGACGCCGCAGGAGGAAATGAT
CGTGCAAGAGGCGCAGCAACGCCTTGGGAATCGGTGGGCGGAAATTGCCA
AACTCATCCCGGGCCGGACAGATAACAGCATCAAAAATTACTACTACTCG
ACGATGCGAAAGAACATGCGTCGAGCTGCCAAGCAATTCGTAGACAGTGG
ATTGGGAGAATCTGCGGCGGCAAAAGGGGCGGGGGAGATTGCTGCAGCAG
GTGGCGGTCGTGGGGAAGCAGGAGCAAGAGCAGGAGCAGGAGCAGCAGAA
TGGTCGGGGGTCTCTGCAGATGGTGAGGCTAAGTCGCAGGACCCGCAACA
ACAGAAACGAGGTGCTAAATTTGGAGCCCACGGTGCGACGAAGCGAGCGA
AAGCGAGCATGAACAAGGAGGCTTACCAACCACTTCCGCACTACTAGCAG
GGATGGACTACTCGGGGCGTTCTGCTACCGTCGC

protein sequence of jgi.p|Nanoce1779_2|629636

>mRNA_3941-protein ID=mRNA_3941-protein|Name=jgi.p|Nanoce1779_2|629636|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MEHTQPQQVQDKSPNSCEGSNQIDVVQGQQDVGQIENDLTALLRRAMLET
GKDPSMLLPAAGMPTPKQQHLQPSQRPARQASASSQTQQTDEEVCGKNRR
AWTDKEDECILELVYEHGTRSWTAIAQGLAIRAPGMDRTGKQCRTRWLNH
LDPAINKSPWTPQEEMIVQEAQQRLGNRWAEIAKLIPGRTDNSIKNYYYS
TMRKNMRRAAKQFVDSGLGESAAAKGAGEIAAAGGGRGEAGARAGAGAAE
WSGVSADGEAKSQDPQQQKRGAKFGAHGATKRAKASMNKEAYQPLPHY*

mRNA from alignment at scaffold_8:452428..454263+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3941 ID=mRNA_3941|Name=jgi.p|Nanoce1779_2|629636|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp|location=Sequence derived from alignment at scaffold_8:452428..454263+ (Nannochloropsis oceanica)
GAAATCAGGTTTTGCGGCTATTGGCCTCATTCCAGCAGGCGCGCTGCCTC
CGCCAGACTTCAGTTCCCCACGTATACATGCGCACCGACGAGGTCACTCC
GTACCTTGAAAGCGTTACACCAGAGAGCCCAACAGCTCCCATGTGCCATC
CTTGTCTCATCATTTGTCCTTTTCCCCTGTCTATCCCTTATTTCAATCTA
CAACAACAGACAGAACCACGCGTCATCAGGAAAGACCCATCGTCGCACCC
ATGGAGCACACACAACCCCAACAAGTGCAAGATAAATCCCCAAATTCCTG
TGAAGGAAGCAATCAGATCGATGTTGTCCAAGGACAACAGGATGTGGGGC
AAATAGAGAATGATTTGACCGCCCTGTTGCGGCGGGCCATGTTAGAGACT
GGTAAGGACCCCAGCATGCTGCTGCCGGCCGCCGGGATGCCGACGCCCAA
GCAACAGCACCTGCAGCCCTCCCAGAGACCAGCTCGCCAGGCATCAGCCT
CATCACAAACACAACAAACCGACGAGGAAGTGTGTGGGAAGAACCGACGG
GCCTGGACCGATAAGGAGGACGAGTGCATCTTGGAGCTGGTTTACGAGCA
CGGCACGCGGAGCTGGACAGCGATTGCTCAAGGACTGGCCATCAGGGCGC
CGGGAATGGATCGTACGGGCAAGCAATGTCGCACGCGATGGTTGAATCAT
TTAGACCCGGCCATCAACAAGTCCCCTTGGACGCCGCAGGAGGAAATGAT
CGTGCAAGAGGCGCAGCAACGCCTTGGGAATCGGTGGGCGGAAATTGCCA
AACTCATCCCGGGCCGGACAGATAACAGCATCAAAAATTACTACTACTCG
ACGATGCGAAAGAACATGCGTCGAGCTGCCAAGCAATTCGTAGACAGTGG
ATTGGGAGAATCTGCGGCGGCAAAAGGGGCGGGGGAGATTGCTGCAGCAG
GTGGCGGTCGTGGGGAAGCAGGAGCAAGAGCAGGAGCAGGAGCAGCAGAA
TGGTCGGGGGTCTCTGCAGATGGTGAGGCTAAGTCGCAGGACCCGCAACA
ACAGAAACGAGGTGCTAAATTTGGAGCCCACGGTGCGACGAAGCGAGCGA
AAGCGAGCATGAACAAGGAGGTGAGAGAGGAACAGCAGGATGCCGCGACC
AGTTGCAGTAGTCGCCGCATAAATAGTAAGAGCACTACGAGCAGCCCCCA
TGCGCTGCACCGCGGTATGATAGATGATGCGCTACCTTCCCTAGCTACTC
TGGCTGTTCCTCAATTTAATTATCTAGGAGGACATACCTTCATTCAGGAT
GCCATTGCTGCGGCCGGGATGGGTGGTTACCCTGGAGGAGAATCCCCGTA
CCTCTCCTCCTCATCCTCCTCCTCGACCTTCACGACTCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGCAGTGGCAGCTGCAACAGCAGCAAGAGCAA
ATACAGCAGTATTTGCTCTATCAGCAGATGGAGCAGCTGTATCAGCAGCA
ACTTCAGCACCAGCACCAGATCCACCAACAACAACAGGAGCATCACGGCT
TCAACCCTCTCCCTCCCGCTGGCGCCACCCCCTTCGACCCACAACCACCC
TTCCAGACCTCAAACGAGGGCGTTAGTAATAATATGGACCTCGCCACAAA
AATCAGTGAACTAATGGCGAGTTTTTCTACTTCTTCCTCTTCTTCTCCTC
CTCTTCCTACATCGGGCCCCTATCCCTCCTCTGCCTCTGCTTCTGCCCCC
TCTTCCTCCGCCGCCTACACAGGCTTACCAACCACTTCCGCACTACTAGC
AGGGATGGACTACTCGGGGCGTTCTGCTACCGTCGC

Coding sequence (CDS) from alignment at scaffold_8:452428..454263+

>mRNA_3941 ID=mRNA_3941|Name=jgi.p|Nanoce1779_2|629636|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_8:452428..454263+ (Nannochloropsis oceanica)
ATGGAGCACACACAACCCCAACAAGTGCAAGATAAATCCCCAAATTCCTG
TGAAGGAAGCAATCAGATCGATGTTGTCCAAGGACAACAGGATGTGGGGC
AAATAGAGAATGATTTGACCGCCCTGTTGCGGCGGGCCATGTTAGAGACT
GGTAAGGACCCCAGCATGCTGCTGCCGGCCGCCGGGATGCCGACGCCCAA
GCAACAGCACCTGCAGCCCTCCCAGAGACCAGCTCGCCAGGCATCAGCCT
CATCACAAACACAACAAACCGACGAGGAAGTGTGTGGGAAGAACCGACGG
GCCTGGACCGATAAGGAGGACGAGTGCATCTTGGAGCTGGTTTACGAGCA
CGGCACGCGGAGCTGGACAGCGATTGCTCAAGGACTGGCCATCAGGGCGC
CGGGAATGGATCGTACGGGCAAGCAATGTCGCACGCGATGGTTGAATCAT
TTAGACCCGGCCATCAACAAGTCCCCTTGGACGCCGCAGGAGGAAATGAT
CGTGCAAGAGGCGCAGCAACGCCTTGGGAATCGGTGGGCGGAAATTGCCA
AACTCATCCCGGGCCGGACAGATAACAGCATCAAAAATTACTACTACTCG
ACGATGCGAAAGAACATGCGTCGAGCTGCCAAGCAATTCGTAGACAGTGG
ATTGGGAGAATCTGCGGCGGCAAAAGGGGCGGGGGAGATTGCTGCAGCAG
GTGGCGGTCGTGGGGAAGCAGGAGCAAGAGCAGGAGCAGGAGCAGCAGAA
TGGTCGGGGGTCTCTGCAGATGGTGAGGCTAAGTCGCAGGACCCGCAACA
ACAGAAACGAGGTGCTAAATTTGGAGCCCACGGTGCGACGAAGCGAGCGA
AAGCGAGCATGAACAAGGAGGCTTACCAACCACTTCCGCACTACTAGATG
GAGCACACACAACCCCAACAAGTGCAAGATAAATCCCCAAATTCCTGTGA
AGGAAGCAATCAGATCGATGTTGTCCAAGGACAACAGGATGTGGGGCAAA
TAGAGAATGATTTGACCGCCCTGTTGCGGCGGGCCATGTTAGAGACTGGT
AAGGACCCCAGCATGCTGCTGCCGGCCGCCGGGATGCCGACGCCCAAGCA
ACAGCACCTGCAGCCCTCCCAGAGACCAGCTCGCCAGGCATCAGCCTCAT
CACAAACACAACAAACCGACGAGGAAGTGTGTGGGAAGAACCGACGGGCC
TGGACCGATAAGGAGGACGAGTGCATCTTGGAGCTGGTTTACGAGCACGG
CACGCGGAGCTGGACAGCGATTGCTCAAGGACTGGCCATCAGGGCGCCGG
GAATGGATCGTACGGGCAAGCAATGTCGCACGCGATGGTTGAATCATTTA
GACCCGGCCATCAACAAGTCCCCTTGGACGCCGCAGGAGGAAATGATCGT
GCAAGAGGCGCAGCAACGCCTTGGGAATCGGTGGGCGGAAATTGCCAAAC
TCATCCCGGGCCGGACAGATAACAGCATCAAAAATTACTACTACTCGACG
ATGCGAAAGAACATGCGTCGAGCTGCCAAGCAATTCGTAGACAGTGGATT
GGGAGAATCTGCGGCGGCAAAAGGGGCGGGGGAGATTGCTGCAGCAGGTG
GCGGTCGTGGGGAAGCAGGAGCAAGAGCAGGAGCAGGAGCAGCAGAATGG
TCGGGGGTCTCTGCAGATGGTGAGGCTAAGTCGCAGGACCCGCAACAACA
GAAACGAGGTGCTAAATTTGGAGCCCACGGTGCGACGAAGCGAGCGAAAG
CGAGCATGAACAAGGAGGCTTACCAACCACTTCCGCACTACTAG

Synonyms

Publications