jgi.p|Nanoce1779_2|527217, mRNA_3937 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527217
Unique NamemRNA_3937
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length312
Alignment locationscaffold_8:441799..442398 -

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Properties
Property NameValue
TranscriptId527303
TrackFilteredModels2
ProteinId527217
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:441799..442398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527217gene_3937Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527217mRNA_3937-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3937CDS_3937Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3937 ID=mRNA_3937|Name=jgi.p|Nanoce1779_2|527217|organism=Nannochloropsis oceanica|type=mRNA|length=312bp
ATGAATTCGTCCAAGCGGAGGAGAATTGCAACGAAATGGACACAAGCAGA
AGACCAACGGATACAAGCACTAGTCCAGCAGCACGGGACGCGCAGCTGGA
CCCTGGTCTCGCGTGAGCTTCCCAACCGCAACCCCAAACAGTGTCGCGAG
CGGTGGTTCAATCAGCTCGACCCGAACATCAAGCAGGAGGGCTGGACGGA
GGAAGAGGAAGAGACGCTTCTCCGAGCCCACGCCATGTTAGGCAATCGGT
GGATGGAGATCTCGAAGCTTCTGCCAGGAAGGACAGATAATGCAGTCAAG
AATCATTGGTAA
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protein sequence of jgi.p|Nanoce1779_2|527217

>mRNA_3937-protein ID=mRNA_3937-protein|Name=jgi.p|Nanoce1779_2|527217|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MNSSKRRRIATKWTQAEDQRIQALVQQHGTRSWTLVSRELPNRNPKQCRE
RWFNQLDPNIKQEGWTEEEEETLLRAHAMLGNRWMEISKLLPGRTDNAVK
NHW*
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mRNA from alignment at scaffold_8:441799..442398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3937 ID=mRNA_3937|Name=jgi.p|Nanoce1779_2|527217|organism=Nannochloropsis oceanica|type=mRNA|length=600bp|location=Sequence derived from alignment at scaffold_8:441799..442398- (Nannochloropsis oceanica)
ATGAATTCGTCCAAGCGGAGGAGAATTGCAACGAAATGGACACAAGCAGA
AGACCAACGGATACAAGCACTAGTCCAGCAGCACGGGACGCGCAGCTGGA
CCCTGGTCTCGCGTGAGCTTCCCAACCGCAACCCCAAACAGGTACGAATA
TTCTCTCCTGTTCTTTAAAAACAACACTTGTTATGTCTTCGAATCCTCGG
CCAACAGCGGCGGCGATACATGCATTTAGCGTCACCCTTGTATTGCACCG
CTCACAAGATTTCGCCATAGCAGCTCTTGATTCCAGACGTTGGGACTGTG
GTGGGCGGGGTTCAAAATGCTCTCCGTCAGCAAGATCCACATAGTTAAAG
AAGGCAGTAGCTCTTCATCTCGACTGTCTCTCTAAATGCCCCCACTACCA
TAAAATCCTCACTGTTCCCACTCCAACAGTGTCGCGAGCGGTGGTTCAAT
CAGCTCGACCCGAACATCAAGCAGGAGGGCTGGACGGAGGAAGAGGAAGA
GACGCTTCTCCGAGCCCACGCCATGTTAGGCAATCGGTGGATGGAGATCT
CGAAGCTTCTGCCAGGAAGGACAGATAATGCAGTCAAGAATCATTGGTAA
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Coding sequence (CDS) from alignment at scaffold_8:441799..442398-

>mRNA_3937 ID=mRNA_3937|Name=jgi.p|Nanoce1779_2|527217|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_8:441799..442398- (Nannochloropsis oceanica)
TGTCGCGAGCGGTGGTTCAATCAGCTCGACCCGAACATCAAGCAGGAGGG
CTGGACGGAGGAAGAGGAAGAGACGCTTCTCCGAGCCCACGCCATGTTAG
GCAATCGGTGGATGGAGATCTCGAAGCTTCTGCCAGGAAGGACAGATAAT
GCAGTCAAGAATCATTGGTAAATGAATTCGTCCAAGCGGAGGAGAATTGC
AACGAAATGGACACAAGCAGAAGACCAACGGATACAAGCACTAGTCCAGC
AGCACGGGACGCGCAGCTGGACCCTGGTCTCGCGTGAGCTTCCCAACCGC
AACCCCAAACAGTGTCGCGAGCGGTGGTTCAATCAGCTCGACCCGAACAT
CAAGCAGGAGGGCTGGACGGAGGAAGAGGAAGAGACGCTTCTCCGAGCCC
ACGCCATGTTAGGCAATCGGTGGATGGAGATCTCGAAGCTTCTGCCAGGA
AGGACAGATAATGCAGTCAAGAATCATTGGTAAATGAATTCGTCCAAGCG
GAGGAGAATTGCAACGAAATGGACACAAGCAGAAGACCAACGGATACAAG
CACTAGTCCAGCAGCACGGGACGCGCAGCTGGACCCTGGTCTCGCGTGAG
CTTCCCAACCGCAACCCCAAACAG
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Synonyms
Publications