jgi.p|Nanoce1779_2|585888, mRNA_3936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585888
Unique NamemRNA_3936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length493
Alignment locationscaffold_8:439003..439495 -

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Properties
Property NameValue
TranscriptId585974
TrackFilteredModels2
ProteinId585888
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:439003..439495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585888gene_3936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585888mRNA_3936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3936CDS_3936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3936 ID=mRNA_3936|Name=jgi.p|Nanoce1779_2|585888|organism=Nannochloropsis oceanica|type=mRNA|length=493bp
ACACACACACACACACACACACACACACACACACACATGCAGACCCAACA
CCAACACAGACACACTCACACATACACTCTCTCACTCACCGACTCTCGTC
GATCCGTCGCAAAAATAATCTTCTTAGTCGTTGTTACCGCACGCTCATAC
ATGTGTCTGCTTTGTCTGCCTCTTGACCCGTGTCCCGTTGCCTTTATACC
TTTCGCTTTCCCTACCCTTTGTCCCTATCCACTGCTGGTGTCATTTTGCT
TCCGTTGCGATTTTTGATCCTCATTCTCTCATCATCTCTGTATCTCCCTA
TCTCTCTCTGCTCTCCTCCCTCCCTTCCCCCATTCGTGTCCCTCACAATA
TATACTTCAGCATTTCGTTAACCCACGAAACAAGGATCTACTGGACTTTT
CTCTTCTTCCCTCTCTTCCCCTGCTCTCTCCCCTCCTCTCTCCCTTCTCC
AGTTTATGCATCTAATTACGTCGCCCTCCGCCACGTCCCCGCC
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protein sequence of jgi.p|Nanoce1779_2|585888

>mRNA_3936-protein ID=mRNA_3936-protein|Name=jgi.p|Nanoce1779_2|585888|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MQTQHQHRHTHTYTLSLTDSRRSVAKIIFLVVVTARSYMCLLCLPLDPCP
VAFIPFAFPTLCPYPLLVSFCFRCDF*
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mRNA from alignment at scaffold_8:439003..439495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3936 ID=mRNA_3936|Name=jgi.p|Nanoce1779_2|585888|organism=Nannochloropsis oceanica|type=mRNA|length=493bp|location=Sequence derived from alignment at scaffold_8:439003..439495- (Nannochloropsis oceanica)
ACACACACACACACACACACACACACACACACACACATGCAGACCCAACA
CCAACACAGACACACTCACACATACACTCTCTCACTCACCGACTCTCGTC
GATCCGTCGCAAAAATAATCTTCTTAGTCGTTGTTACCGCACGCTCATAC
ATGTGTCTGCTTTGTCTGCCTCTTGACCCGTGTCCCGTTGCCTTTATACC
TTTCGCTTTCCCTACCCTTTGTCCCTATCCACTGCTGGTGTCATTTTGCT
TCCGTTGCGATTTTTGATCCTCATTCTCTCATCATCTCTGTATCTCCCTA
TCTCTCTCTGCTCTCCTCCCTCCCTTCCCCCATTCGTGTCCCTCACAATA
TATACTTCAGCATTTCGTTAACCCACGAAACAAGGATCTACTGGACTTTT
CTCTTCTTCCCTCTCTTCCCCTGCTCTCTCCCCTCCTCTCTCCCTTCTCC
AGTTTATGCATCTAATTACGTCGCCCTCCGCCACGTCCCCGCC
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Coding sequence (CDS) from alignment at scaffold_8:439003..439495-

>mRNA_3936 ID=mRNA_3936|Name=jgi.p|Nanoce1779_2|585888|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_8:439003..439495- (Nannochloropsis oceanica)
ATGCAGACCCAACACCAACACAGACACACTCACACATACACTCTCTCACT
CACCGACTCTCGTCGATCCGTCGCAAAAATAATCTTCTTAGTCGTTGTTA
CCGCACGCTCATACATGTGTCTGCTTTGTCTGCCTCTTGACCCGTGTCCC
GTTGCCTTTATACCTTTCGCTTTCCCTACCCTTTGTCCCTATCCACTGCT
GGTGTCATTTTGCTTCCGTTGCGATTTTTGA
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Synonyms
Publications