jgi.p|Nanoce1779_2|665414, mRNA_3935 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|665414
Unique Name	mRNA_3935
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1686
Alignment location	scaffold_8:437493..439178 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	665500
Track	FilteredModels2
ProteinId	665414

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:437493..439178 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|665414	gene_3935	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|665414	mRNA_3935-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3935	CDS_3935	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:437493..439178+
coding sequence from alignment at scaffold_8:437493..439178+

mRNA sequence

>mRNA_3935 ID=mRNA_3935|Name=jgi.p|Nanoce1779_2|665414|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
CCAACACACATCTACAACACACAAAGCACAGACAAGCAACAAAATGACGA
CTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGAACCGGTC
AAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAGTCCCCGC
CACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAATGAAGTTG
CCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGCTGCTGCT
GCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAGTCCCTGC
TGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCGCAGACAT
CGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAACTGGCGC
CGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGGGCTATGT
CCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTCACCACCG
ACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAGCACACTG
CTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGGCTTCAAT
CCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGACAGCGACA
AGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGACGGCGCG
GCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCTTGGGTCC
TGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAGCTGACGG
GGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAAGGCATTG
GCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGAAGACGAA
TGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGCAAACTGT
CTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGCGCAAGAA
GTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGGCAAAAGC
GGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTGGCCGCGC
TTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTACGCTTTAT
TACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGTACGTCTC
GTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTGCCCGAGA
CGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAGCGAGGTG
GTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGGAAGAGGT
CCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAACTTGGAAA
ATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGGAGGGGGA
GGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGGTGGGGGGCGTGGTC
GGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAGATGCATAA
ACTGGAGAAGGGAGAGAGGAGGGGAGAGAGCAGGGGAAGAGAGGGAAGAA
GAGAAAAGTCCAGTAGATCCTTGTTTCGTGGGTTAACGAAATGCTGAAGT
ATATATTGTGAGGGACACGAATGGGGGAAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|665414

>mRNA_3935-protein ID=mRNA_3935-protein|Name=jgi.p|Nanoce1779_2|665414|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MTTETTGTAVAELSVEEPVKEVEAPAAPTTTAAVPATPTAEGPADEAKVN
EVAPVENPPVKMKEIAAAAAPTATVAIPAKKEEVPAALAAPAPAAPLTAA
QTSELKALMDFYFGAANWRRDKFLQGEAAKDPEGYVPLTVLLTFNKLKKL
TTDSAIVVKALEQAPHSTLLTLNADKTAVKRTVASIPATGAEGGDAASDD
SDKRTLFVDGIPKVPTDGAAEVTVDDIVSIFKALGPVDFVRLSRDKTSKK
LTGAAFVEFPTVADAQKALAVEWKTHPVASLGGKTNVILRVRQYERDYKS
KLSSGGAGAAVGQKRRAQEVEEGGEGGEGGEKKAKAVCDFDLPENFEKEL
AALVPRHVKFTGIKPGTLYYELREFFNKYGQVKYVSYVADSNVALIKFLL
PETAAKFLGEGEKREVSEVVFKEEKLVAEAPTEEEVREQLLAKNARKRSN
LENRGQGRREGGRHGGGGGGRGRGGGKGRGGWGAWSGGEGGDVAEGDVIR
CINWRRERGGERAGEEREEEKSPVDPCFVG*

mRNA from alignment at scaffold_8:437493..439178+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3935 ID=mRNA_3935|Name=jgi.p|Nanoce1779_2|665414|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at scaffold_8:437493..439178+ (Nannochloropsis oceanica)
CCAACACACATCTACAACACACAAAGCACAGACAAGCAACAAAATGACGA
CTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGAACCGGTC
AAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAGTCCCCGC
CACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAATGAAGTTG
CCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGCTGCTGCT
GCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAGTCCCTGC
TGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCGCAGACAT
CGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAACTGGCGC
CGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGGGCTATGT
CCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTCACCACCG
ACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAGCACACTG
CTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGGCTTCAAT
CCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGACAGCGACA
AGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGACGGCGCG
GCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCTTGGGTCC
TGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAGCTGACGG
GGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAAGGCATTG
GCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGAAGACGAA
TGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGCAAACTGT
CTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGCGCAAGAA
GTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGGCAAAAGC
GGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTGGCCGCGC
TTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTACGCTTTAT
TACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGTACGTCTC
GTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTGCCCGAGA
CGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAGCGAGGTG
GTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGGAAGAGGT
CCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAACTTGGAAA
ATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGGAGGGGGA
GGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGGTGGGGGGCGTGGTC
GGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAGATGCATAA
ACTGGAGAAGGGAGAGAGGAGGGGAGAGAGCAGGGGAAGAGAGGGAAGAA
GAGAAAAGTCCAGTAGATCCTTGTTTCGTGGGTTAACGAAATGCTGAAGT
ATATATTGTGAGGGACACGAATGGGGGAAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_8:437493..439178+

>mRNA_3935 ID=mRNA_3935|Name=jgi.p|Nanoce1779_2|665414|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_8:437493..439178+ (Nannochloropsis oceanica)
ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA
ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG
TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT
GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC
TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG
TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG
CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA
CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG
GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC
ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG
CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG
CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC
AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA
CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT
TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG
CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA
GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA
AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC
AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC
GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG
CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG
GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC
GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT
ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG
CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG
CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG
AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC
TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG
AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGGTGGGGGG
CGTGGTCGGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAGA
TGCATAAACTGGAGAAGGGAGAGAGGAGGGGAGAGAGCAGGGGAAGAGAG
GGAAGAAGAGAAAAGTCCAGTAGATCCTTGTTTCGTGGGTTAA

Synonyms

Publications