jgi.p|Nanoce1779_2|585881, mRNA_3934 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585881
Unique NamemRNA_3934
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1299
Alignment locationscaffold_8:434786..436084 +

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Properties
Property NameValue
TranscriptId585967
TrackFilteredModels2
ProteinId585881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:434786..436084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585881gene_3934Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585881mRNA_3934-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3934CDS_3934Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3934 ID=mRNA_3934|Name=jgi.p|Nanoce1779_2|585881|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
CAGCCACTGCTCTTAACCGACAAAGAGAAAGTACTTAGCAACATAATATG
CATGACTCTAGTTTGTACTGCTGCTCTTCGTATTTCCCTCCTGAAACCAA
AACGCGTACATACCTGGCAACGTCCCGCCAAGGCCTCCCGCAAATCCTTC
TGCAAGTTTTTAATCTGGCTCGTGTGGTGGCTGCGAGCCTTATCAATCTG
TCCTTGCAAATCAGCCACTCTCTCTCTCACCTTCTGCTGCCAGGCTTTGC
GTTCCTCTTCCAAGCGGTGCGCCCAAGCGTCCTTTGTCTCCCGCAATTCT
TCACCATGCTGCACCTGCGATTCGGTCATCTGTGCTTGCAAGAGCGCGAT
TTCCTCGGCCGTTTTCTGTTGCCAGCCTTTGCGCTCCTCAGTCAAGCGCT
GCATCCAAGACTCTTTAGTCTCGAGTAGCTCGCTCTCCAGCAGGGTATTG
CGTGTACGCTCTCGTTTCCTCTCTGCCTCCAGCGCTATTTGTCTCTCTCG
GGCCTCCTCTCCCTGGGCCAAATGGTCGACCTTGGTCTGATGCAAGCACC
TTTCCAGGTCATAGATACGGCCTTGCAGCATGCTGCTCTTGTCCTGGAAC
GTGTGTCTCTCCTGATCCAGCCGCTTCTCGAGGATTTGGTAGACGCGCTT
TGCCTTAGCAAGCTCTACCTCCGTTTTGGAAAAGGCGTCGAACTCGCCGG
CGCCGCTTGCAGTGCTGCTGTTGGCGGTATTCTTGTCAATGTAGTCAAAT
TCGTGGGTGTATATGGTCTCCTCACCGTGCAGGACGCCCGAGCCCGTGGC
CGCCATTGTTCTATGTTTGGAAATTTGGGCTGATTTGGGTCTCTCTGCGC
AGTATGCAGGAGAGGGAGAGGAGAGCACCGAGCAAGGCACTGAATGAATA
GGAAAAGAATGAATGAATTGGAATGCCATTGCCGGCTAAGAGAGATAGTG
ATGGCCCATGACACGGACAAGGACACAGACACAAATGCCAATTTAAGGAA
AAATCGTCCAATATCCAACGATCATTTGTGTGAGGCGTTGTCGCCGTTAA
CGCGGTAACCCCTTTTTTGTTTTGAGGCCAGCGACCCTACTCCTTTCGAA
TGGGTTCGTTCCTCCACAAGTTGTGATTTTGATTCACACCGTGGTTAGCT
TGCTCGTTCTTTACTTAAACCACATTCATTACATTTGCCATGCCTCCAAG
AGACGACTTGTTTTTTTCGAGTACACCTTCTGAGAGATCTTTTCGTGGCG
CGTGCCGAAGCAGGCCAACAATGAATCATGGACAGTATCACGCACCCAT
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protein sequence of jgi.p|Nanoce1779_2|585881

>mRNA_3934-protein ID=mRNA_3934-protein|Name=jgi.p|Nanoce1779_2|585881|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MTLVCTAALRISLLKPKRVHTWQRPAKASRKSFCKFLIWLVWWLRALSIC
PCKSATLSLTFCCQALRSSSKRCAQASFVSRNSSPCCTCDSVICACKSAI
SSAVFCCQPLRSSVKRCIQDSLVSSSSLSSRVLRVRSRFLSASSAICLSR
ASSPWAKWSTLV*
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mRNA from alignment at scaffold_8:434786..436084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3934 ID=mRNA_3934|Name=jgi.p|Nanoce1779_2|585881|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp|location=Sequence derived from alignment at scaffold_8:434786..436084+ (Nannochloropsis oceanica)
CAGCCACTGCTCTTAACCGACAAAGAGAAAGTACTTAGCAACATAATATG
CATGACTCTAGTTTGTACTGCTGCTCTTCGTATTTCCCTCCTGAAACCAA
AACGCGTACATACCTGGCAACGTCCCGCCAAGGCCTCCCGCAAATCCTTC
TGCAAGTTTTTAATCTGGCTCGTGTGGTGGCTGCGAGCCTTATCAATCTG
TCCTTGCAAATCAGCCACTCTCTCTCTCACCTTCTGCTGCCAGGCTTTGC
GTTCCTCTTCCAAGCGGTGCGCCCAAGCGTCCTTTGTCTCCCGCAATTCT
TCACCATGCTGCACCTGCGATTCGGTCATCTGTGCTTGCAAGAGCGCGAT
TTCCTCGGCCGTTTTCTGTTGCCAGCCTTTGCGCTCCTCAGTCAAGCGCT
GCATCCAAGACTCTTTAGTCTCGAGTAGCTCGCTCTCCAGCAGGGTATTG
CGTGTACGCTCTCGTTTCCTCTCTGCCTCCAGCGCTATTTGTCTCTCTCG
GGCCTCCTCTCCCTGGGCCAAATGGTCGACCTTGGTCTGATGCAAGCACC
TTTCCAGGTCATAGATACGGCCTTGCAGCATGCTGCTCTTGTCCTGGAAC
GTGTGTCTCTCCTGATCCAGCCGCTTCTCGAGGATTTGGTAGACGCGCTT
TGCCTTAGCAAGCTCTACCTCCGTTTTGGAAAAGGCGTCGAACTCGCCGG
CGCCGCTTGCAGTGCTGCTGTTGGCGGTATTCTTGTCAATGTAGTCAAAT
TCGTGGGTGTATATGGTCTCCTCACCGTGCAGGACGCCCGAGCCCGTGGC
CGCCATTGTTCTATGTTTGGAAATTTGGGCTGATTTGGGTCTCTCTGCGC
AGTATGCAGGAGAGGGAGAGGAGAGCACCGAGCAAGGCACTGAATGAATA
GGAAAAGAATGAATGAATTGGAATGCCATTGCCGGCTAAGAGAGATAGTG
ATGGCCCATGACACGGACAAGGACACAGACACAAATGCCAATTTAAGGAA
AAATCGTCCAATATCCAACGATCATTTGTGTGAGGCGTTGTCGCCGTTAA
CGCGGTAACCCCTTTTTTGTTTTGAGGCCAGCGACCCTACTCCTTTCGAA
TGGGTTCGTTCCTCCACAAGTTGTGATTTTGATTCACACCGTGGTTAGCT
TGCTCGTTCTTTACTTAAACCACATTCATTACATTTGCCATGCCTCCAAG
AGACGACTTGTTTTTTTCGAGTACACCTTCTGAGAGATCTTTTCGTGGCG
CGTGCCGAAGCAGGCCAACAATGAATCATGGACAGTATCACGCACCCAT
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Coding sequence (CDS) from alignment at scaffold_8:434786..436084+

>mRNA_3934 ID=mRNA_3934|Name=jgi.p|Nanoce1779_2|585881|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_8:434786..436084+ (Nannochloropsis oceanica)
ATGACTCTAGTTTGTACTGCTGCTCTTCGTATTTCCCTCCTGAAACCAAA
ACGCGTACATACCTGGCAACGTCCCGCCAAGGCCTCCCGCAAATCCTTCT
GCAAGTTTTTAATCTGGCTCGTGTGGTGGCTGCGAGCCTTATCAATCTGT
CCTTGCAAATCAGCCACTCTCTCTCTCACCTTCTGCTGCCAGGCTTTGCG
TTCCTCTTCCAAGCGGTGCGCCCAAGCGTCCTTTGTCTCCCGCAATTCTT
CACCATGCTGCACCTGCGATTCGGTCATCTGTGCTTGCAAGAGCGCGATT
TCCTCGGCCGTTTTCTGTTGCCAGCCTTTGCGCTCCTCAGTCAAGCGCTG
CATCCAAGACTCTTTAGTCTCGAGTAGCTCGCTCTCCAGCAGGGTATTGC
GTGTACGCTCTCGTTTCCTCTCTGCCTCCAGCGCTATTTGTCTCTCTCGG
GCCTCCTCTCCCTGGGCCAAATGGTCGACCTTGGTCTGA
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Synonyms
Publications