jgi.p|Nanoce1779_2|585874, mRNA_3932 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585874
Unique NamemRNA_3932
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_8:429442..429994 +

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Properties
Property NameValue
TranscriptId585960
TrackFilteredModels2
ProteinId585874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:429442..429994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585874gene_3932Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585874mRNA_3932-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3932CDS_3932Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3932 ID=mRNA_3932|Name=jgi.p|Nanoce1779_2|585874|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
GTTTGATTCCTTCCTTTTTTCTTCTCCTCCATGCCACCAAAACTACTGCT
GCTGTCTTTGCCACAGCTACTCTTCAAATTCGGCTGCGCCCCCAACATTA
ATAATGCTTGCAACGTTCCTCCCAAGGCCAAAGCCGCTCCATCCCCTTCT
CCCTCTCTTTCTGCATTCTCCCACCTCGACCCACCACCACAACATGCCCA
ATGCAATGCTGTCAAACCCCTCTCCACAGCCAACTCCTCTTCCTCCTCTT
TCCCTTTCTCGCTCCTTCCATGCCTTCCTCTACTAAACGCATTAACATCT
GCTCCGAGTTCACCCAAGACCTGGACCACGCCCTCCCACCATCCCTCGCT
GGCTACCATCAAGGCAGTCCTTCCGTCTTTATCGATTGAATCCAAATCGG
CATCATAGGTTTGGAGAGCGAGGAGACACCGACGGAGGACAGGGAGGAGG
GAGTTGTTCACTACCCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCG
TGGGAGAAGGCGGGGTGAAACGGAAGCGAGGAAAGCAGGAGTTCGCCCGT
CCA
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protein sequence of jgi.p|Nanoce1779_2|585874

>mRNA_3932-protein ID=mRNA_3932-protein|Name=jgi.p|Nanoce1779_2|585874|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MPPKLLLLSLPQLLFKFGCAPNINNACNVPPKAKAAPSPSPSLSAFSHLD
PPPQHAQCNAVKPLSTANSSSSSFPFSLLPCLPLLNALTSAPSSPKTWTT
PSHHPSLATIKAVLPSLSIESKSAS*
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mRNA from alignment at scaffold_8:429442..429994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3932 ID=mRNA_3932|Name=jgi.p|Nanoce1779_2|585874|organism=Nannochloropsis oceanica|type=mRNA|length=553bp|location=Sequence derived from alignment at scaffold_8:429442..429994+ (Nannochloropsis oceanica)
GTTTGATTCCTTCCTTTTTTCTTCTCCTCCATGCCACCAAAACTACTGCT
GCTGTCTTTGCCACAGCTACTCTTCAAATTCGGCTGCGCCCCCAACATTA
ATAATGCTTGCAACGTTCCTCCCAAGGCCAAAGCCGCTCCATCCCCTTCT
CCCTCTCTTTCTGCATTCTCCCACCTCGACCCACCACCACAACATGCCCA
ATGCAATGCTGTCAAACCCCTCTCCACAGCCAACTCCTCTTCCTCCTCTT
TCCCTTTCTCGCTCCTTCCATGCCTTCCTCTACTAAACGCATTAACATCT
GCTCCGAGTTCACCCAAGACCTGGACCACGCCCTCCCACCATCCCTCGCT
GGCTACCATCAAGGCAGTCCTTCCGTCTTTATCGATTGAATCCAAATCGG
CATCATAGGTTTGGAGAGCGAGGAGACACCGACGGAGGACAGGGAGGAGG
GAGTTGTTCACTACCCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCG
TGGGAGAAGGCGGGGTGAAACGGAAGCGAGGAAAGCAGGAGTTCGCCCGT
CCA
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Coding sequence (CDS) from alignment at scaffold_8:429442..429994+

>mRNA_3932 ID=mRNA_3932|Name=jgi.p|Nanoce1779_2|585874|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_8:429442..429994+ (Nannochloropsis oceanica)
ATGCCACCAAAACTACTGCTGCTGTCTTTGCCACAGCTACTCTTCAAATT
CGGCTGCGCCCCCAACATTAATAATGCTTGCAACGTTCCTCCCAAGGCCA
AAGCCGCTCCATCCCCTTCTCCCTCTCTTTCTGCATTCTCCCACCTCGAC
CCACCACCACAACATGCCCAATGCAATGCTGTCAAACCCCTCTCCACAGC
CAACTCCTCTTCCTCCTCTTTCCCTTTCTCGCTCCTTCCATGCCTTCCTC
TACTAAACGCATTAACATCTGCTCCGAGTTCACCCAAGACCTGGACCACG
CCCTCCCACCATCCCTCGCTGGCTACCATCAAGGCAGTCCTTCCGTCTTT
ATCGATTGAATCCAAATCGGCATCATAG
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Synonyms
Publications