jgi.p|Nanoce1779_2|585872, mRNA_3931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585872
Unique NamemRNA_3931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length734
Alignment locationscaffold_8:428001..428734 -

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Properties
Property NameValue
TranscriptId585958
TrackFilteredModels2
ProteinId585872
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:428001..428734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585872gene_3931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585872mRNA_3931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3931CDS_3931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3931 ID=mRNA_3931|Name=jgi.p|Nanoce1779_2|585872|organism=Nannochloropsis oceanica|type=mRNA|length=734bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGGAGGATTAGTGAGGGTTGGAGGAGGAGGAGGTAGCGAGACGATGGTCC
GTGTGTGTGATGGGTGTTTTAATTGGGGGTTGCATCAGTTGTTGGCGATG
CAGGCTGGTGCTATTGTTGGTGCGACTGTTGGTGCTGGTAGTGGTAGTCA
TGGTATACAGCAGCAGCAGCAAGAGATTCAGAATGCGAAAAGGGAGGATG
CAGACCAACAGGAGCTCTACAGCAGCAGCAACAGCAACAGTTGTAATAAC
AAGAAGGACGACAAATTGAACAGAAAAGGCGGCTTGCTCGGCTTCTTCCG
GAAGGATGGCTCCTATTCGTCCTCCGCTCCTGTCGCTGCCCGTCGAGCCA
CCGAGAGCATCGGCAACGCAATGGGTGAGTTGAAAGCAGGACTGCAGGAT
CGAGGAGAGAGACTTGAAAGCTTGGCGGATAAGACAACGGAGCTGGCGGA
GTGCTCGGCCCAGTTTGCAGATATGGCCAAGCAGCTGAATGAGCAGTATG
GGAGTGGAAGGGGGTGGTGGTGAGACACATAAGACGACCTAGCACAGCAA
CAGCCTGCTAGAGTGCTAAAACCCAAATAATGGACAAAGGAACGGACAGT
GTGTGTATGTGTGTGTGAGTGGGTGGATGTTTGAAAAACAAAGCAATCAG
GGTGTAAATCTAATAAGAAAATTTAATTGTTTTT
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protein sequence of jgi.p|Nanoce1779_2|585872

>mRNA_3931-protein ID=mRNA_3931-protein|Name=jgi.p|Nanoce1779_2|585872|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MVRVCDGCFNWGLHQLLAMQAGAIVGATVGAGSGSHGIQQQQQEIQNAKR
EDADQQELYSSSNSNSCNNKKDDKLNRKGGLLGFFRKDGSYSSSAPVAAR
RATESIGNAMGELKAGLQDRGERLESLADKTTELAECSAQFADMAKQLNE
QYGSGRGWW*
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mRNA from alignment at scaffold_8:428001..428734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3931 ID=mRNA_3931|Name=jgi.p|Nanoce1779_2|585872|organism=Nannochloropsis oceanica|type=mRNA|length=734bp|location=Sequence derived from alignment at scaffold_8:428001..428734- (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGGAGGATTAGTGAGGGTTGGAGGAGGAGGAGGTAGCGAGACGATGGTCC
GTGTGTGTGATGGGTGTTTTAATTGGGGGTTGCATCAGTTGTTGGCGATG
CAGGCTGGTGCTATTGTTGGTGCGACTGTTGGTGCTGGTAGTGGTAGTCA
TGGTATACAGCAGCAGCAGCAAGAGATTCAGAATGCGAAAAGGGAGGATG
CAGACCAACAGGAGCTCTACAGCAGCAGCAACAGCAACAGTTGTAATAAC
AAGAAGGACGACAAATTGAACAGAAAAGGCGGCTTGCTCGGCTTCTTCCG
GAAGGATGGCTCCTATTCGTCCTCCGCTCCTGTCGCTGCCCGTCGAGCCA
CCGAGAGCATCGGCAACGCAATGGGTGAGTTGAAAGCAGGACTGCAGGAT
CGAGGAGAGAGACTTGAAAGCTTGGCGGATAAGACAACGGAGCTGGCGGA
GTGCTCGGCCCAGTTTGCAGATATGGCCAAGCAGCTGAATGAGCAGTATG
GGAGTGGAAGGGGGTGGTGGTGAGACACATAAGACGACCTAGCACAGCAA
CAGCCTGCTAGAGTGCTAAAACCCAAATAATGGACAAAGGAACGGACAGT
GTGTGTATGTGTGTGTGAGTGGGTGGATGTTTGAAAAACAAAGCAATCAG
GGTGTAAATCTAATAAGAAAATTTAATTGTTTTT
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Coding sequence (CDS) from alignment at scaffold_8:428001..428734-

>mRNA_3931 ID=mRNA_3931|Name=jgi.p|Nanoce1779_2|585872|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_8:428001..428734- (Nannochloropsis oceanica)
ATGGTCCGTGTGTGTGATGGGTGTTTTAATTGGGGGTTGCATCAGTTGTT
GGCGATGCAGGCTGGTGCTATTGTTGGTGCGACTGTTGGTGCTGGTAGTG
GTAGTCATGGTATACAGCAGCAGCAGCAAGAGATTCAGAATGCGAAAAGG
GAGGATGCAGACCAACAGGAGCTCTACAGCAGCAGCAACAGCAACAGTTG
TAATAACAAGAAGGACGACAAATTGAACAGAAAAGGCGGCTTGCTCGGCT
TCTTCCGGAAGGATGGCTCCTATTCGTCCTCCGCTCCTGTCGCTGCCCGT
CGAGCCACCGAGAGCATCGGCAACGCAATGGGTGAGTTGAAAGCAGGACT
GCAGGATCGAGGAGAGAGACTTGAAAGCTTGGCGGATAAGACAACGGAGC
TGGCGGAGTGCTCGGCCCAGTTTGCAGATATGGCCAAGCAGCTGAATGAG
CAGTATGGGAGTGGAAGGGGGTGGTGGTGA
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Synonyms
Publications