jgi.p|Nanoce1779_2|585869, mRNA_3930 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585869
Unique NamemRNA_3930
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1194
Alignment locationscaffold_8:426807..428000 +

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Properties
Property NameValue
TranscriptId585955
TrackFilteredModels2
ProteinId585869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:426807..428000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585869gene_3930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585869mRNA_3930-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3930CDS_3930Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3930 ID=mRNA_3930|Name=jgi.p|Nanoce1779_2|585869|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ACAGTCTCATTACCACCGGGGGGAGCAGCTGGAACCCTAAACCGACCCTT
GCAGGAGCAGAAGCGGCAGCAGCATAATTTGCGGGGTGGCATTAGTAGCG
TCAGGATGCAAAGCATACTTTCCCTTCTCGTCCGGCCACGCACCTTCCTC
TCCCCCCCCCCCACCTCACTAAACGTCAGGCCGCGTCGTCGTCCCTTGAC
AAGCACCAGCAACACTACTTCTACAGCAGCTCCCCCCGTCAAAGTCGCCT
CCTCTCCCTCCCACCCTCTTTCCTCCTCTTCTTCCTTCTCCTCTTTCTCC
CCCTGGGCCACGTATAGCCGCCTTTTGCGTGAGCATCCCATCAAAACCAA
GCTCCTTACTTCCTCCTTTCTCATGGGCGCTGGCGATATCTCCTGCCAAT
TTCTTACTCGCTGTCAAAAGCAACAAGAGCACGAACAAGCCCAGCAAGCG
AACCTGTCCTTCCTTCCTCTCTCCCTCCATCCCTACGACTGGCACCGGAC
CTTAAAATTCTTCTTTTTGGGCGGGGTTGTTGTCGGCCCGGCCCTCCACC
ACTGGTACTCCTTCCTCGTCCGCTTCTCGCCCGCGCAGACGACCGCTGGA
GCATTGAAACGGTTGGCATTGGATCAACTGGTGTTTGCTCCTACTTTCAT
TCCGGTCTTTTTTTCGGGCCTTCAATTCTTAGATGGGAATTTCGACTTGA
AGCAACTAAGAGGGAAGCTGGAGAGGGACTACGTGGATACGCTCGTCGCA
AATTACTTGCTGTGGGTCCCAGCGATGCTGATTAATTTTCGATTGGTGCC
CATGCAGTACCAGGTGTTGTTTTCGAATGCTGTGGGCTTTGGGTGGAATG
TTTTCTTGAGTGCCGTGAGCCATAAGGAGGGAGAGGGAGGGTAGTGAGTG
AGGGATGGTCATTGGTGGTACAAGTACCTTGACAGAGAGAAGAGACGTAC
AGATGATAATGTGTGCGAGTGTGGAAAAGACAGTAAGAAAGTAGGAGAGA
GAAAGAAGCGTTTGCGCGCTTGTTGGATTGGTGGGTGGGTGGTTATGTAC
CCCTGCTCGTTGTACAAGTAAATAGATCCGACAAAAAGACACACAATGTA
CACAAGAAGGAGTGGGAGAGGGTGCAGGGCGAGGAAGAGGATGAGGGCGA
AATGGAAGAAGATGAGGTGCAGCTATTGTACGGGGGGCGTAACA
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protein sequence of jgi.p|Nanoce1779_2|585869

>mRNA_3930-protein ID=mRNA_3930-protein|Name=jgi.p|Nanoce1779_2|585869|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MQSILSLLVRPRTFLSPPPTSLNVRPRRRPLTSTSNTTSTAAPPVKVASS
PSHPLSSSSSFSSFSPWATYSRLLREHPIKTKLLTSSFLMGAGDISCQFL
TRCQKQQEHEQAQQANLSFLPLSLHPYDWHRTLKFFFLGGVVVGPALHHW
YSFLVRFSPAQTTAGALKRLALDQLVFAPTFIPVFFSGLQFLDGNFDLKQ
LRGKLERDYVDTLVANYLLWVPAMLINFRLVPMQYQVLFSNAVGFGWNVF
LSAVSHKEGEGG*
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mRNA from alignment at scaffold_8:426807..428000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3930 ID=mRNA_3930|Name=jgi.p|Nanoce1779_2|585869|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp|location=Sequence derived from alignment at scaffold_8:426807..428000+ (Nannochloropsis oceanica)
ACAGTCTCATTACCACCGGGGGGAGCAGCTGGAACCCTAAACCGACCCTT
GCAGGAGCAGAAGCGGCAGCAGCATAATTTGCGGGGTGGCATTAGTAGCG
TCAGGATGCAAAGCATACTTTCCCTTCTCGTCCGGCCACGCACCTTCCTC
TCCCCCCCCCCCACCTCACTAAACGTCAGGCCGCGTCGTCGTCCCTTGAC
AAGCACCAGCAACACTACTTCTACAGCAGCTCCCCCCGTCAAAGTCGCCT
CCTCTCCCTCCCACCCTCTTTCCTCCTCTTCTTCCTTCTCCTCTTTCTCC
CCCTGGGCCACGTATAGCCGCCTTTTGCGTGAGCATCCCATCAAAACCAA
GCTCCTTACTTCCTCCTTTCTCATGGGCGCTGGCGATATCTCCTGCCAAT
TTCTTACTCGCTGTCAAAAGCAACAAGAGCACGAACAAGCCCAGCAAGCG
AACCTGTCCTTCCTTCCTCTCTCCCTCCATCCCTACGACTGGCACCGGAC
CTTAAAATTCTTCTTTTTGGGCGGGGTTGTTGTCGGCCCGGCCCTCCACC
ACTGGTACTCCTTCCTCGTCCGCTTCTCGCCCGCGCAGACGACCGCTGGA
GCATTGAAACGGTTGGCATTGGATCAACTGGTGTTTGCTCCTACTTTCAT
TCCGGTCTTTTTTTCGGGCCTTCAATTCTTAGATGGGAATTTCGACTTGA
AGCAACTAAGAGGGAAGCTGGAGAGGGACTACGTGGATACGCTCGTCGCA
AATTACTTGCTGTGGGTCCCAGCGATGCTGATTAATTTTCGATTGGTGCC
CATGCAGTACCAGGTGTTGTTTTCGAATGCTGTGGGCTTTGGGTGGAATG
TTTTCTTGAGTGCCGTGAGCCATAAGGAGGGAGAGGGAGGGTAGTGAGTG
AGGGATGGTCATTGGTGGTACAAGTACCTTGACAGAGAGAAGAGACGTAC
AGATGATAATGTGTGCGAGTGTGGAAAAGACAGTAAGAAAGTAGGAGAGA
GAAAGAAGCGTTTGCGCGCTTGTTGGATTGGTGGGTGGGTGGTTATGTAC
CCCTGCTCGTTGTACAAGTAAATAGATCCGACAAAAAGACACACAATGTA
CACAAGAAGGAGTGGGAGAGGGTGCAGGGCGAGGAAGAGGATGAGGGCGA
AATGGAAGAAGATGAGGTGCAGCTATTGTACGGGGGGCGTAACA
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Coding sequence (CDS) from alignment at scaffold_8:426807..428000+

>mRNA_3930 ID=mRNA_3930|Name=jgi.p|Nanoce1779_2|585869|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_8:426807..428000+ (Nannochloropsis oceanica)
ATGCAAAGCATACTTTCCCTTCTCGTCCGGCCACGCACCTTCCTCTCCCC
CCCCCCCACCTCACTAAACGTCAGGCCGCGTCGTCGTCCCTTGACAAGCA
CCAGCAACACTACTTCTACAGCAGCTCCCCCCGTCAAAGTCGCCTCCTCT
CCCTCCCACCCTCTTTCCTCCTCTTCTTCCTTCTCCTCTTTCTCCCCCTG
GGCCACGTATAGCCGCCTTTTGCGTGAGCATCCCATCAAAACCAAGCTCC
TTACTTCCTCCTTTCTCATGGGCGCTGGCGATATCTCCTGCCAATTTCTT
ACTCGCTGTCAAAAGCAACAAGAGCACGAACAAGCCCAGCAAGCGAACCT
GTCCTTCCTTCCTCTCTCCCTCCATCCCTACGACTGGCACCGGACCTTAA
AATTCTTCTTTTTGGGCGGGGTTGTTGTCGGCCCGGCCCTCCACCACTGG
TACTCCTTCCTCGTCCGCTTCTCGCCCGCGCAGACGACCGCTGGAGCATT
GAAACGGTTGGCATTGGATCAACTGGTGTTTGCTCCTACTTTCATTCCGG
TCTTTTTTTCGGGCCTTCAATTCTTAGATGGGAATTTCGACTTGAAGCAA
CTAAGAGGGAAGCTGGAGAGGGACTACGTGGATACGCTCGTCGCAAATTA
CTTGCTGTGGGTCCCAGCGATGCTGATTAATTTTCGATTGGTGCCCATGC
AGTACCAGGTGTTGTTTTCGAATGCTGTGGGCTTTGGGTGGAATGTTTTC
TTGAGTGCCGTGAGCCATAAGGAGGGAGAGGGAGGGTAG
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Synonyms
Publications