jgi.p|Nanoce1779_2|627861, mRNA_393 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|627861
Unique NamemRNA_393
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1167
Alignment locationscaffold_3:979700..981297 -

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Properties
Property NameValue
TranscriptId627947
TrackFilteredModels2
ProteinId627861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:979700..981297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627861gene_393Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627861mRNA_393-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_393CDS_393Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_393 ID=mRNA_393|Name=jgi.p|Nanoce1779_2|627861|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ACAGCCCACATAAAGTAGACCAATGAAGACCCTATCCCTGCAGCTCTTGC
TCATTGTGCTCTTTGTCGCCTTTAGTCCTGCGGCTGCCTACAAGAAGCGT
AAGGAATGGACCGAAGAAGAGCTGGAGGCCTTGGAGAGGGCTTGGGAGGC
CAATGATGCGGAGGAGGACCTCGACAGCCCCGAACGCCGGCAACGCCTTG
AGATGGAGGCTTTCAAGGTCAAAAATGATCCTGCTACCGCTGCTAGTGAA
ATTTCTCCTAAAGGTGGTGTCGGCATGCCTCCTGGTGCCCCCCCCATGAT
GGGCAAGCAGACTGGGCCGAAGATGATGTTTGTGAACCTGCTGCCCGAGA
AAGCGCCTGATAAGACGGCGTGGTCTTCCAGGGACGTTGAAATGCTCTCC
GCGAAGTGGCGCAGGATGCTAATTACTGGCGGCGTCTCCGCAGACGTCTA
CAACCTCGACGATAACGTCCTCGTGAATGTCGAACATCACTTACTAGCTG
ACGCCAAGGAATTCTTATTCGACCAGTCCGAGGTCGACTTCCTGACTCTG
GACCAGCAAAAAATTTACCCTAATGGTCGTCACGAGTAATACCGGAAACT
TTGTCCGGGATGCGAGGCGGGAACTTATACTGACGGTTAGGGTTAGGGTT
AGGCGGGAAGATGTTTAAAACTGGTAGTAAAAGTTATCATGTGGGAAATT
GCAGGGCCGAAAAGGGTATGTGTGTGTTGAGTCCCTGCAACAACAAGCGA
GTGGTTGGCGGCCTGTCCCTCGGAGGAAAGTCTCGAGGTGTGCATGATTC
TCTCTAAAAGCATAAAAATATGAAAAAAAGATCAGGACGGATGACATCAA
AGGCTAAAGTGGAAGCGAGAAAGCAACGTTGCACACGAGCTGGTTGTGTA
AGGCCTTGAGCTTGGGCGTCCTGCCGCTTGCACCCCCTGTTTCGATCGCA
GCTGCGTCTTGGTTTTTGGTCTCCCCCCTCTCCCTATTCGAGGGTTGCCT
TGGATTTTTCTCGATGCTCCCTCTATTGCATGTAGAATACTTGGTGTAAG
GCTCAGATTTGCGCGCAAAGACTTGCTTTGGGGCTGGAGTTGTGCCGACG
ATGGGCCGGCGATGCCTACGCCTTGCGGCAACCGCAACGTTCGTCACTGG
CTGGTACAACCTTTTCC
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protein sequence of jgi.p|Nanoce1779_2|627861

>mRNA_393-protein ID=mRNA_393-protein|Name=jgi.p|Nanoce1779_2|627861|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MKTLSLQLLLIVLFVAFSPAAAYKKRKEWTEEELEALERAWEANDAEEDL
DSPERRQRLEMEAFKVKNDPATAASEISPKGGVGMPPGAPPMMGKQTGPK
MMFVNLLPEKAPDKTAWSSRDVEMLSAKWRRMLITGGVSADVYNLDDNVL
VNVEHHLLADAKEFLFDQSEVDFLTLDQQKIYPNGRHE*
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mRNA from alignment at scaffold_3:979700..981297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_393 ID=mRNA_393|Name=jgi.p|Nanoce1779_2|627861|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_3:979700..981297- (Nannochloropsis oceanica)
ACAGCCCACATAAAGTAGACCAATGAAGACCCTATCCCTGCAGCTCTTGC
TCATTGTGCTCTTTGTCGCCTTTAGTCCTGCGGCTGCCTACAAGAAGCGT
AAGGAATGGACCGAAGAAGAGCTGGAGGCCTTGGAGAGGGCTTGGGAGGC
CAATGATGCGGAGGAGGACCTCGACAGCCCCGAACGCCGGCAACGCCTTG
AGATGGAGGCTTTCAAGGTCAAAAATGATCCTGCTACCGCTGCTAGGTAA
GTGTGGATTGGAGTGCAGATATGGAAGAGGGGGCAAGGAGGGTTGTGTTG
AAAGAGGGAGATGGGCGTAGATGCTGCTTCTCGCCAGGAGAGCAGTAAAG
GGGCATGGGCAATGGCACACCTAATTATTGACTGACTGACTGTAGAGCGG
CATTGGAAATGGTGGGTGGTCTTTTGTCAGTGTCCCTTCTTGTCGTCCAT
CTCCGCCCTACAGCGAGCCCCTCACTTTCTTATTGCCTCGTTGCCTTCGC
TTACCCACCCGTAAGTGAAATTTCTCCTAAAGGTGGTGTCGGCATGCCTC
CTGGTGCCCCCCCCATGATGGGCAAGCAGACTGGGCCGAAGATGATGTTT
GTGAACCTGCTGCCCGAGAAAGCGCCTGATAAGACGGCGTGGTCTTCCAG
GGACGTTGAAATGCTCTCCGCGAAGTGGCGCAGGGTACGTACTGAAGCAT
GGGTGTCGGGATGGAAGGATGTATAGCAACGTGTGGCATTCTCTTACTTG
CTTCGTTACTTCATGCGTAATCGCGTAAGCTAACTTCTTCTTTCCCTCTT
TTTCTTATCTTTCCACACAACAACCCTCCTTCCCCAAATCATTCAGATGC
TAATTACTGGCGGCGTCTCCGCAGACGTCTACAACCTCGACGATAACGTC
CTCGTGAATGTCGAACATCACTTACTAGCTGACGCCAAGGAATTCTTATT
CGACCAGTCCGAGGTCGACTTCCTGACTCTGGACCAGCAAAAAATTTACC
CTAATGGTCGTCACGAGTAATACCGGAAACTTTGTCCGGGATGCGAGGCG
GGAACTTATACTGACGGTTAGGGTTAGGGTTAGGCGGGAAGATGTTTAAA
ACTGGTAGTAAAAGTTATCATGTGGGAAATTGCAGGGCCGAAAAGGGTAT
GTGTGTGTTGAGTCCCTGCAACAACAAGCGAGTGGTTGGCGGCCTGTCCC
TCGGAGGAAAGTCTCGAGGTGTGCATGATTCTCTCTAAAAGCATAAAAAT
ATGAAAAAAAGATCAGGACGGATGACATCAAAGGCTAAAGTGGAAGCGAG
AAAGCAACGTTGCACACGAGCTGGTTGTGTAAGGCCTTGAGCTTGGGCGT
CCTGCCGCTTGCACCCCCTGTTTCGATCGCAGCTGCGTCTTGGTTTTTGG
TCTCCCCCCTCTCCCTATTCGAGGGTTGCCTTGGATTTTTCTCGATGCTC
CCTCTATTGCATGTAGAATACTTGGTGTAAGGCTCAGATTTGCGCGCAAA
GACTTGCTTTGGGGCTGGAGTTGTGCCGACGATGGGCCGGCGATGCCTAC
GCCTTGCGGCAACCGCAACGTTCGTCACTGGCTGGTACAACCTTTTCC
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Coding sequence (CDS) from alignment at scaffold_3:979700..981297-

>mRNA_393 ID=mRNA_393|Name=jgi.p|Nanoce1779_2|627861|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_3:979700..981297- (Nannochloropsis oceanica)
ATGCTAATTACTGGCGGCGTCTCCGCAGACGTCTACAACCTCGACGATAA
CGTCCTCGTGAATGTCGAACATCACTTACTAGCTGACGCCAAGGAATTCT
TATTCGACCAGTCCGAGGTCGACTTCCTGACTCTGGACCAGCAAAAAATT
TACCCTAATGGTCGTCACGAGTAATGAAATTTCTCCTAAAGGTGGTGTCG
GCATGCCTCCTGGTGCCCCCCCCATGATGGGCAAGCAGACTGGGCCGAAG
ATGATGTTTGTGAACCTGCTGCCCGAGAAAGCGCCTGATAAGACGGCGTG
GTCTTCCAGGGACGTTGAAATGCTCTCCGCGAAGTGGCGCAGGATGAAGA
CCCTATCCCTGCAGCTCTTGCTCATTGTGCTCTTTGTCGCCTTTAGTCCT
GCGGCTGCCTACAAGAAGCGTAAGGAATGGACCGAAGAAGAGCTGGAGGC
CTTGGAGAGGGCTTGGGAGGCCAATGATGCGGAGGAGGACCTCGACAGCC
CCGAACGCCGGCAACGCCTTGAGATGGAGGCTTTCAAGGTCAAAAATGAT
CCTGCTACCGCTGCTAGATGCTAATTACTGGCGGCGTCTCCGCAGACGTC
TACAACCTCGACGATAACGTCCTCGTGAATGTCGAACATCACTTACTAGC
TGACGCCAAGGAATTCTTATTCGACCAGTCCGAGGTCGACTTCCTGACTC
TGGACCAGCAAAAAATTTACCCTAATGGTCGTCACGAGTAATGAAATTTC
TCCTAAAGGTGGTGTCGGCATGCCTCCTGGTGCCCCCCCCATGATGGGCA
AGCAGACTGGGCCGAAGATGATGTTTGTGAACCTGCTGCCCGAGAAAGCG
CCTGATAAGACGGCGTGGTCTTCCAGGGACGTTGAAATGCTCTCCGCGAA
GTGGCGCAGGATGAAGACCCTATCCCTGCAGCTCTTGCTCATTGTGCTCT
TTGTCGCCTTTAGTCCTGCGGCTGCCTACAAGAAGCGTAAGGAATGGACC
GAAGAAGAGCTGGAGGCCTTGGAGAGGGCTTGGGAGGCCAATGATGCGGA
GGAGGACCTCGACAGCCCCGAACGCCGGCAACGCCTTGAGATGGAGGCTT
TCAAGGTCAAAAATGATCCTGCTACCGCTGCTAGATGCTAATTACTGGCG
GCGTCTCCGCAGACGTCTACAACCTCGACGATAACGTCCTCGTGAATGTC
GAACATCACTTACTAGCTGACGCCAAGGAATTCTTATTCGACCAGTCCGA
GGTCGACTTCCTGACTCTGGACCAGCAAAAAATTTACCCTAATGGTCGTC
ACGAGTAATGAAATTTCTCCTAAAGGTGGTGTCGGCATGCCTCCTGGTGC
CCCCCCCATGATGGGCAAGCAGACTGGGCCGAAGATGATGTTTGTGAACC
TGCTGCCCGAGAAAGCGCCTGATAAGACGGCGTGGTCTTCCAGGGACGTT
GAAATGCTCTCCGCGAAGTGGCGCAGGATGAAGACCCTATCCCTGCAGCT
CTTGCTCATTGTGCTCTTTGTCGCCTTTAGTCCTGCGGCTGCCTACAAGA
AGCGTAAGGAATGGACCGAAGAAGAGCTGGAGGCCTTGGAGAGGGCTTGG
GAGGCCAATGATGCGGAGGAGGACCTCGACAGCCCCGAACGCCGGCAACG
CCTTGAGATGGAGGCTTTCAAGGTCAAAAATGATCCTGCTACCGCTGCTA
G
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Synonyms
Publications