jgi.p|Nanoce1779_2|585866, mRNA_3928 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585866
Unique Name	mRNA_3928
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1749
Alignment location	scaffold_8:424412..426160 -

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Properties


Property Name	Value
TranscriptId	585952
Track	FilteredModels2
ProteinId	585866

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:424412..426160 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585866	gene_3928	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585866	mRNA_3928-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3928	CDS_3928	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:424412..426160-
coding sequence from alignment at scaffold_8:424412..426160-

mRNA sequence

>mRNA_3928 ID=mRNA_3928|Name=jgi.p|Nanoce1779_2|585866|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
ACAGCCATTATGGCGCTGCGGCCAGCGGGTTTTATTTCTCTAACCGCCCT
CGCCATCGTAGCGGCAACAACATCTACCTCTTCGTTCATGCCTCCCGGCT
TTTGCTTCCGCCGCGCTTTTGCGACGACCACCCGGGCATGCAACGTGCCC
TCTTTATCCTCCTCCGGCTTCCACAACACCCTCACCACCCACCACCGCGC
CCTATTCCTCACCCCCGAGAACCAACACGCCATAGACGAAGCCCGTCGTC
GTCAATTTCGCGCCAGCAGCACCACTTTGCACGCCTCTACCTCTTCCCCC
TCCTCTCAACCCTCCTCCCTGACCTTCAGTACCAAAGACGAGTACTTTGC
GCACCTTTCCTCTATCGCCGACCTCCCCCTCGGCTTCAAGGTTGGCACCT
CGTGGATTTCATTCACGCCTCAAGAAGCCAATTTCCCCTCCCGTATGAAT
GTGACCCTCATTGCTCTTGATGAGCCCACCGATAAATTTGCTTTAGCGTT
GACAAAAAATGCCTTCCCCGGGGCACCTGTCCGTGTGGGGAAACAACGCA
AAGAGCAACCCCTCCTTCAAGCCATCGTCGTCAACAACAAGATCTCCAAC
GTCTGTCCCGGTGGCTATGGGGGAGACGGTGGCGTAGCCGACGCCGAGCT
TGTGTGCGCCGCCGTCGCCAAGCACCTCAACCTTCCCTCAGGCAGCCTTG
TCCTTCCCTCCTCCACCGGTGTAATTGGCTGGCGCCTCCCCTTCCAGGCC
GTCATCGACGCCGTCCCTTCCGTCCTCAAAACAATGCAATCCACCTCCAT
TCTCCCCGCGGCTGCTGGTATCATCACCACGGATCGCTACCCCAAAATTC
GAGCCGCTTCCATCGGAGGCGGGAAAATCGTGGGTATCGCCAAGGGGGCA
GGGATGATCGAGCCGAACCTCGCAACCATGCTCGTATATCTCTTGACTGA
TCTGGCGGTACCGCGAGAAGTACTACGGCAATGGTTGCCCGAAGTGGTGG
GGGGTAGTTTCAATTGCATTTCGGTCGATTCGGATCAGAGCACCTCCGAC
ACAGTCGTCCTCCTCTCCAGCGGCAAGGTCCCTGTGGATGAAGCAGACTA
CCCTGCTATCAAAGAATCCCTCATCTCACTGGCACGGAAACTCGCGGAGG
ACATTGTCAGGAACGGGGAAGGAACGAACCACGTCATCGAGCTCAAGGTC
TCCCATGCCCCTTCCCTCGCCATAGCCCGCGCCCTCGGCCGGCAAGTCAT
CAATTCTCCCTTGCTCAAATGTGCGATCGCCGGCAACGACCCCAACGTCG
GTCGCCTTGCGGCTGCCGTTGGCTCGTACGTGGGGAACCAAGGCCTGGAA
AGCGATTTGAGGTTGGAAAAATGTCGTTTATTGATGGGGGGAAAGATAGT
CTTTAAGGGAGGGGCTTTTGAGCTTGATCCGGAGAAGGAGAGGTATCTTG
TAGAACACATGGAGGCCGCGCAGCTGGAGCCTGGCCCATTGACCATGGCG
AGTGGGGCGCACATTGAATTTCCTCCGCACGAAAGGAATGTGATGTTGGA
AGTGGACTTGGGGGAGGAAGGGGGGGAGGAACTGACGTTGTTTGGGAGTG
ATTTGACGTACGCGTATGTGACTGAGAATGCGGATTACAGGTCGTAGGAG
GGAGGGAAGGAGAGAAAAAGAGTTGTGGTATACTATATGATCGGCTAGAT
GTACGTGAAAAATGGTGTCTATCGCTCACCCTCTGTGCATTTATTTTAT

protein sequence of jgi.p|Nanoce1779_2|585866

>mRNA_3928-protein ID=mRNA_3928-protein|Name=jgi.p|Nanoce1779_2|585866|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MALRPAGFISLTALAIVAATTSTSSFMPPGFCFRRAFATTTRACNVPSLS
SSGFHNTLTTHHRALFLTPENQHAIDEARRRQFRASSTTLHASTSSPSSQ
PSSLTFSTKDEYFAHLSSIADLPLGFKVGTSWISFTPQEANFPSRMNVTL
IALDEPTDKFALALTKNAFPGAPVRVGKQRKEQPLLQAIVVNNKISNVCP
GGYGGDGGVADAELVCAAVAKHLNLPSGSLVLPSSTGVIGWRLPFQAVID
AVPSVLKTMQSTSILPAAAGIITTDRYPKIRAASIGGGKIVGIAKGAGMI
EPNLATMLVYLLTDLAVPREVLRQWLPEVVGGSFNCISVDSDQSTSDTVV
LLSSGKVPVDEADYPAIKESLISLARKLAEDIVRNGEGTNHVIELKVSHA
PSLAIARALGRQVINSPLLKCAIAGNDPNVGRLAAAVGSYVGNQGLESDL
RLEKCRLLMGGKIVFKGGAFELDPEKERYLVEHMEAAQLEPGPLTMASGA
HIEFPPHERNVMLEVDLGEEGGEELTLFGSDLTYAYVTENADYRS*

mRNA from alignment at scaffold_8:424412..426160-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3928 ID=mRNA_3928|Name=jgi.p|Nanoce1779_2|585866|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at scaffold_8:424412..426160- (Nannochloropsis oceanica)
ACAGCCATTATGGCGCTGCGGCCAGCGGGTTTTATTTCTCTAACCGCCCT
CGCCATCGTAGCGGCAACAACATCTACCTCTTCGTTCATGCCTCCCGGCT
TTTGCTTCCGCCGCGCTTTTGCGACGACCACCCGGGCATGCAACGTGCCC
TCTTTATCCTCCTCCGGCTTCCACAACACCCTCACCACCCACCACCGCGC
CCTATTCCTCACCCCCGAGAACCAACACGCCATAGACGAAGCCCGTCGTC
GTCAATTTCGCGCCAGCAGCACCACTTTGCACGCCTCTACCTCTTCCCCC
TCCTCTCAACCCTCCTCCCTGACCTTCAGTACCAAAGACGAGTACTTTGC
GCACCTTTCCTCTATCGCCGACCTCCCCCTCGGCTTCAAGGTTGGCACCT
CGTGGATTTCATTCACGCCTCAAGAAGCCAATTTCCCCTCCCGTATGAAT
GTGACCCTCATTGCTCTTGATGAGCCCACCGATAAATTTGCTTTAGCGTT
GACAAAAAATGCCTTCCCCGGGGCACCTGTCCGTGTGGGGAAACAACGCA
AAGAGCAACCCCTCCTTCAAGCCATCGTCGTCAACAACAAGATCTCCAAC
GTCTGTCCCGGTGGCTATGGGGGAGACGGTGGCGTAGCCGACGCCGAGCT
TGTGTGCGCCGCCGTCGCCAAGCACCTCAACCTTCCCTCAGGCAGCCTTG
TCCTTCCCTCCTCCACCGGTGTAATTGGCTGGCGCCTCCCCTTCCAGGCC
GTCATCGACGCCGTCCCTTCCGTCCTCAAAACAATGCAATCCACCTCCAT
TCTCCCCGCGGCTGCTGGTATCATCACCACGGATCGCTACCCCAAAATTC
GAGCCGCTTCCATCGGAGGCGGGAAAATCGTGGGTATCGCCAAGGGGGCA
GGGATGATCGAGCCGAACCTCGCAACCATGCTCGTATATCTCTTGACTGA
TCTGGCGGTACCGCGAGAAGTACTACGGCAATGGTTGCCCGAAGTGGTGG
GGGGTAGTTTCAATTGCATTTCGGTCGATTCGGATCAGAGCACCTCCGAC
ACAGTCGTCCTCCTCTCCAGCGGCAAGGTCCCTGTGGATGAAGCAGACTA
CCCTGCTATCAAAGAATCCCTCATCTCACTGGCACGGAAACTCGCGGAGG
ACATTGTCAGGAACGGGGAAGGAACGAACCACGTCATCGAGCTCAAGGTC
TCCCATGCCCCTTCCCTCGCCATAGCCCGCGCCCTCGGCCGGCAAGTCAT
CAATTCTCCCTTGCTCAAATGTGCGATCGCCGGCAACGACCCCAACGTCG
GTCGCCTTGCGGCTGCCGTTGGCTCGTACGTGGGGAACCAAGGCCTGGAA
AGCGATTTGAGGTTGGAAAAATGTCGTTTATTGATGGGGGGAAAGATAGT
CTTTAAGGGAGGGGCTTTTGAGCTTGATCCGGAGAAGGAGAGGTATCTTG
TAGAACACATGGAGGCCGCGCAGCTGGAGCCTGGCCCATTGACCATGGCG
AGTGGGGCGCACATTGAATTTCCTCCGCACGAAAGGAATGTGATGTTGGA
AGTGGACTTGGGGGAGGAAGGGGGGGAGGAACTGACGTTGTTTGGGAGTG
ATTTGACGTACGCGTATGTGACTGAGAATGCGGATTACAGGTCGTAGGAG
GGAGGGAAGGAGAGAAAAAGAGTTGTGGTATACTATATGATCGGCTAGAT
GTACGTGAAAAATGGTGTCTATCGCTCACCCTCTGTGCATTTATTTTAT

Coding sequence (CDS) from alignment at scaffold_8:424412..426160-

>mRNA_3928 ID=mRNA_3928|Name=jgi.p|Nanoce1779_2|585866|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_8:424412..426160- (Nannochloropsis oceanica)
ATGGCGCTGCGGCCAGCGGGTTTTATTTCTCTAACCGCCCTCGCCATCGT
AGCGGCAACAACATCTACCTCTTCGTTCATGCCTCCCGGCTTTTGCTTCC
GCCGCGCTTTTGCGACGACCACCCGGGCATGCAACGTGCCCTCTTTATCC
TCCTCCGGCTTCCACAACACCCTCACCACCCACCACCGCGCCCTATTCCT
CACCCCCGAGAACCAACACGCCATAGACGAAGCCCGTCGTCGTCAATTTC
GCGCCAGCAGCACCACTTTGCACGCCTCTACCTCTTCCCCCTCCTCTCAA
CCCTCCTCCCTGACCTTCAGTACCAAAGACGAGTACTTTGCGCACCTTTC
CTCTATCGCCGACCTCCCCCTCGGCTTCAAGGTTGGCACCTCGTGGATTT
CATTCACGCCTCAAGAAGCCAATTTCCCCTCCCGTATGAATGTGACCCTC
ATTGCTCTTGATGAGCCCACCGATAAATTTGCTTTAGCGTTGACAAAAAA
TGCCTTCCCCGGGGCACCTGTCCGTGTGGGGAAACAACGCAAAGAGCAAC
CCCTCCTTCAAGCCATCGTCGTCAACAACAAGATCTCCAACGTCTGTCCC
GGTGGCTATGGGGGAGACGGTGGCGTAGCCGACGCCGAGCTTGTGTGCGC
CGCCGTCGCCAAGCACCTCAACCTTCCCTCAGGCAGCCTTGTCCTTCCCT
CCTCCACCGGTGTAATTGGCTGGCGCCTCCCCTTCCAGGCCGTCATCGAC
GCCGTCCCTTCCGTCCTCAAAACAATGCAATCCACCTCCATTCTCCCCGC
GGCTGCTGGTATCATCACCACGGATCGCTACCCCAAAATTCGAGCCGCTT
CCATCGGAGGCGGGAAAATCGTGGGTATCGCCAAGGGGGCAGGGATGATC
GAGCCGAACCTCGCAACCATGCTCGTATATCTCTTGACTGATCTGGCGGT
ACCGCGAGAAGTACTACGGCAATGGTTGCCCGAAGTGGTGGGGGGTAGTT
TCAATTGCATTTCGGTCGATTCGGATCAGAGCACCTCCGACACAGTCGTC
CTCCTCTCCAGCGGCAAGGTCCCTGTGGATGAAGCAGACTACCCTGCTAT
CAAAGAATCCCTCATCTCACTGGCACGGAAACTCGCGGAGGACATTGTCA
GGAACGGGGAAGGAACGAACCACGTCATCGAGCTCAAGGTCTCCCATGCC
CCTTCCCTCGCCATAGCCCGCGCCCTCGGCCGGCAAGTCATCAATTCTCC
CTTGCTCAAATGTGCGATCGCCGGCAACGACCCCAACGTCGGTCGCCTTG
CGGCTGCCGTTGGCTCGTACGTGGGGAACCAAGGCCTGGAAAGCGATTTG
AGGTTGGAAAAATGTCGTTTATTGATGGGGGGAAAGATAGTCTTTAAGGG
AGGGGCTTTTGAGCTTGATCCGGAGAAGGAGAGGTATCTTGTAGAACACA
TGGAGGCCGCGCAGCTGGAGCCTGGCCCATTGACCATGGCGAGTGGGGCG
CACATTGAATTTCCTCCGCACGAAAGGAATGTGATGTTGGAAGTGGACTT
GGGGGAGGAAGGGGGGGAGGAACTGACGTTGTTTGGGAGTGATTTGACGT
ACGCGTATGTGACTGAGAATGCGGATTACAGGTCGTAG

Synonyms

Publications