jgi.p|Nanoce1779_2|585865, mRNA_3927 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585865
Unique Name	mRNA_3927
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1917
Alignment location	scaffold_8:422241..424434 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585951
Track	FilteredModels2
ProteinId	585865

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:422241..424434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585865	gene_3927	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585865	mRNA_3927-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3927	CDS_3927	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:422241..424434+
coding sequence from alignment at scaffold_8:422241..424434+

mRNA sequence

>mRNA_3927 ID=mRNA_3927|Name=jgi.p|Nanoce1779_2|585865|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp
ACAGAGGTCCAACAGAGCAGGAGATGGCGAGGTCACCGATTATTTTCCTA
GGCTGCACGGCGAAGCAGGTGCGTCCGCGAGGGTTCGATCGAATGCGGGT
CCGGCCTGTCGCCTCAGTCTCCTGCCTCGTGTCGTCTAATGCGTCGTTCC
ACGCGCTAACCCATACAAGAGGCCATCGGCCACGCTTTGCCATCAGCCCG
CAAGAGTCTCGTGTCGCTTCCTTCAAATCTGCGTCGCTATCAACATCCGT
TACCCCCGCCGATATTGCCCACTTCCGAGCCATCTTGGACCCCCCCGCCT
CCTCCAGCTCAAATCATGGCAAGATCATCCTTCCCCCCTCCTCCCCCGAC
GATGATGACCTTCTCACACCATATACCCAAGACTGGACCCGGAAATGGAA
AGCTCCTGCATGTCCTGCCGTCCTTCAGCCCTGTACTACGGAGCAAGTGT
CCGCGTTGCTTGCCTATTGCAATGGGCGGGGCATTGCAGTGGTGCCCCAA
GGAGGAAACACTGGCTTGGTGGGGGGGAGTATCCCTACAGGCAACGAAGT
CGTCCTTTCCCTGTCAAGGATGAACGAAATAATAAGTTTCGACCCCCTCT
CCAGCGTCCTAACCTGTGAAGCGGGCTGCATCCTCGAGCACCTCTCCCTC
TTCCTCCGCCCCCACCAGCACATCATGCCCTTGGACCTGGGTGCCAAAGG
GTCCTGCCAAATCGGTGGCAATGTCAGCACCAACGCGGGCGGCCTCCGAT
ATCTGCGGTACGGCTCTCTGCATGGAAATGTGTTGGGGCTCGAGGTGGTG
CTAGCAGACGGAGAGGTGCTCAATTTACTCTCTACTTTACGAAAGGACAA
CACGGGCTATGATCTCAAGCAATTATTTATTGGTGCCGAAGGGACGCTAG
GTGTGATAACCAAGATATCTATGCATGTGCCACCGGCGCCAGCAGCAGTG
AATGTGGCACTCGTGGGGTTGAATAGTTTCGAGCAGGTGAAGACGATGGT
AGGGAGGACGAGAGAAAAATTGGGGGAAATCTTGAGCGCGATGGAGTTGC
TCGACGCTCAGAGCATGGAGATGGTGGTGGGGAAGAAGGAGTGGGGTTTG
CGTAATCCACTTGCTCTTTCCGCTGCAGCTGCTGTAGACGCAGGAGGGGG
CGGAGGGAGCGAGGTGGGAAGCGAGGTGTCGCCTTACCCTTTTTACATCC
TCCTCGAAACCGCAGGCAGCAACGAAGAGCACGATGAACAAAAACTGGAA
AACCTCCTCACCCTTGCGTTAGAAGAGGATATAATCGCCGATGGTACCCT
CGCCCAAGACGTGAGCCAAGCCAATGATATTTGGAAGCTTAGGGAGTTGA
TCCCTGTGGCGATAGAAGAAGAAGGAAGAGTACATAAATATGACGTTTCT
GTGCCGTTAGATCGGTTTTATGAGTTGGTGGAGAGGACGAGGGAGGGATT
GAGGGAGGAAGGCTTTGGCGTGGCTACAGCACAATCGGCAGGCGCTCCTG
CAGGGGGAAGAAAGAAGGGAGAGGAGGTTAAAGTGGTGGGGTACGGGCAT
TTGGGGGATTCGAATCTGCACCTGAATGTCTCAGTGCCGCGGAATAAGCC
GGACCCCCCCGGTGTAAGTCGTGTGCTTGGTAGGGTGTTGCCATGGGTTA
TGAAGCAGGAGGGAAGCGTAAGTGCAGAGCATGGGCTAGGGCAGTTGAAG
AAGGAGTACTTGCCCTTGACGAAGAGTAGGGCGGCGGTGGCGGCGATGAG
GGGGATGAAGAAGATGCTGGATCCCAAAGGTATTCTTAATCCAGGGAAGT
TTTTCCCGGAGGAGAAGCCGTGAAGGAATGAAGAATTGAGTGAGGGCGGG
ATAAGGGGAGGCGAAAAAGAGAAGAGAGCAAACGATGATGGTACATAAAA
TAAATGCACAGAGGGTG

protein sequence of jgi.p|Nanoce1779_2|585865

>mRNA_3927-protein ID=mRNA_3927-protein|Name=jgi.p|Nanoce1779_2|585865|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MARSPIIFLGCTAKQVRPRGFDRMRVRPVASVSCLVSSNASFHALTHTRG
HRPRFAISPQESRVASFKSASLSTSVTPADIAHFRAILDPPASSSSNHGK
IILPPSSPDDDDLLTPYTQDWTRKWKAPACPAVLQPCTTEQVSALLAYCN
GRGIAVVPQGGNTGLVGGSIPTGNEVVLSLSRMNEIISFDPLSSVLTCEA
GCILEHLSLFLRPHQHIMPLDLGAKGSCQIGGNVSTNAGGLRYLRYGSLH
GNVLGLEVVLADGEVLNLLSTLRKDNTGYDLKQLFIGAEGTLGVITKISM
HVPPAPAAVNVALVGLNSFEQVKTMVGRTREKLGEILSAMELLDAQSMEM
VVGKKEWGLRNPLALSAAAAVDAGGGGGSEVGSEVSPYPFYILLETAGSN
EEHDEQKLENLLTLALEEDIIADGTLAQDVSQANDIWKLRELIPVAIEEE
GRVHKYDVSVPLDRFYELVERTREGLREEGFGVATAQSAGAPAGGRKKGE
EVKVVGYGHLGDSNLHLNVSVPRNKPDPPGVSRVLGRVLPWVMKQEGSVS
AEHGLGQLKKEYLPLTKSRAAVAAMRGMKKMLDPKGILNPGKFFPEEKP*

mRNA from alignment at scaffold_8:422241..424434+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3927 ID=mRNA_3927|Name=jgi.p|Nanoce1779_2|585865|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp|location=Sequence derived from alignment at scaffold_8:422241..424434+ (Nannochloropsis oceanica)
ACAGAGGTCCAACAGAGCAGGAGATGGCGAGGTCACCGATTATTTTCCTA
GGCTGCACGGCGAAGCAGGTGCGTCCGCGAGGGTTCGATCGAATGCGGGT
CCGGCCTGTCGCCTCAGTCTCCTGCCTCGTGTCGTCTAATGCGTCGTTCC
ACGCGCTAACCCATACAAGAGGCCATCGGCCACGCTTTGCCATCAGCCCG
CAAGAGTCTCGTGTCGCTTCCTTCAAATCTGCGTCGCTATCAACATCCGT
TACCCCCGCCGATATTGCCCACTTCCGAGCCATCTTGGACCCCCCCGCCT
CCTCCAGCTCAAATCATGGCAAGATCATCCTTCCCCCCTCCTCCCCCGAC
GATGATGACCTTCTCACACCATATACCCAAGACTGGACCCGGAAATGGAA
AGCTCCTGCATGTCCTGCCGTCCTTCAGCCCTGTACTACGGAGCAAGTGT
CCGCGTTGCTTGCCTATTGCAATGGGCGGGGCATTGCAGTGGTGCCCCAA
GGAGGAAACACTGGCTTGGTGGGGGGGAGTATCCCTACAGGTACACGACC
TCTCCTTTCAATGACATTAAATATTCCCTCTTTTCGTCCTTACTTACCAT
CTCCTCTCCCTGTAAGAAGTGGACTGATTCTCTTCCATTCATGGGTGAAT
GAGACAACAATCCCTTTCGACCCCTTTCTAGCGTTCCGATCTATGTAGCG
GGCCGCATCCTCGAATATCTTTCTCTCTTTACTTCCATTCCATACCCGTA
AACCTAGCGCACAAACATCTAATGAATACTACCCCCCCCCCCCCGGCTCC
TTCACTCCCTCCCACAGGCAACGAAGTCGTCCTTTCCCTGTCAAGGATGA
ACGAAATAATAAGTTTCGACCCCCTCTCCAGCGTCCTAACCTGTGAAGCG
GGCTGCATCCTCGAGCACCTCTCCCTCTTCCTCCGCCCCCACCAGCACAT
CATGCCCTTGGACCTGGGTGCCAAAGGGTCCTGCCAAATCGGTGGCAATG
TCAGCACCAACGCGGGCGGCCTCCGATATCTGCGGTACGGCTCTCTGCAT
GGAAATGTGTTGGGGCTCGAGGTGGTGCTAGCAGACGGAGAGGTGCTCAA
TTTACTCTCTACTTTACGAAAGGACAACACGGGCTATGATCTCAAGCAAT
TATTTATTGGTGCCGAAGGGACGCTAGGTGTGATAACCAAGATATCTATG
CATGTGCCACCGGCGCCAGCAGCAGTGAATGTGGCACTCGTGGGGTTGAA
TAGTTTCGAGCAGGTGAAGACGATGGTAGGGAGGACGAGAGAAAAATTGG
GGGAAATCTTGAGCGCGATGGAGTTGCTCGACGCTCAGAGCATGGAGATG
GTGGTGGGGAAGAAGGAGTGGGGTTTGCGTAATCCACTTGCTCTTTCCGC
TGCAGCTGCTGTAGACGCAGGAGGGGGCGGAGGGAGCGAGGTGGGAAGCG
AGGTGTCGCCTTACCCTTTTTACATCCTCCTCGAAACCGCAGGCAGCAAC
GAAGAGCACGATGAACAAAAACTGGAAAACCTCCTCACCCTTGCGTTAGA
AGAGGATATAATCGCCGATGGTACCCTCGCCCAAGACGTGAGCCAAGCCA
ATGATATTTGGAAGCTTAGGGAGTTGATCCCTGTGGCGATAGAAGAAGAA
GGAAGAGTACATAAATATGACGTTTCTGTGCCGTTAGATCGGTTTTATGA
GTTGGTGGAGAGGACGAGGGAGGGATTGAGGGAGGAAGGCTTTGGCGTGG
CTACAGCACAATCGGCAGGCGCTCCTGCAGGGGGAAGAAAGAAGGGAGAG
GAGGTTAAAGTGGTGGGGTACGGGCATTTGGGGGATTCGAATCTGCACCT
GAATGTCTCAGTGCCGCGGAATAAGCCGGACCCCCCCGGTGTAAGTCGTG
TGCTTGGTAGGGTGTTGCCATGGGTTATGAAGCAGGAGGGAAGCGTAAGT
GCAGAGCATGGGCTAGGGCAGTTGAAGAAGGAGTACTTGCCCTTGACGAA
GAGTAGGGCGGCGGTGGCGGCGATGAGGGGGATGAAGAAGATGCTGGATC
CCAAAGGTATTCTTAATCCAGGGAAGTTTTTCCCGGAGGAGAAGCCGTGA
AGGAATGAAGAATTGAGTGAGGGCGGGATAAGGGGAGGCGAAAAAGAGAA
GAGAGCAAACGATGATGGTACATAAAATAAATGCACAGAGGGTG

Coding sequence (CDS) from alignment at scaffold_8:422241..424434+

>mRNA_3927 ID=mRNA_3927|Name=jgi.p|Nanoce1779_2|585865|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_8:422241..424434+ (Nannochloropsis oceanica)
ATGGCGAGGTCACCGATTATTTTCCTAGGCTGCACGGCGAAGCAGGTGCG
TCCGCGAGGGTTCGATCGAATGCGGGTCCGGCCTGTCGCCTCAGTCTCCT
GCCTCGTGTCGTCTAATGCGTCGTTCCACGCGCTAACCCATACAAGAGGC
CATCGGCCACGCTTTGCCATCAGCCCGCAAGAGTCTCGTGTCGCTTCCTT
CAAATCTGCGTCGCTATCAACATCCGTTACCCCCGCCGATATTGCCCACT
TCCGAGCCATCTTGGACCCCCCCGCCTCCTCCAGCTCAAATCATGGCAAG
ATCATCCTTCCCCCCTCCTCCCCCGACGATGATGACCTTCTCACACCATA
TACCCAAGACTGGACCCGGAAATGGAAAGCTCCTGCATGTCCTGCCGTCC
TTCAGCCCTGTACTACGGAGCAAGTGTCCGCGTTGCTTGCCTATTGCAAT
GGGCGGGGCATTGCAGTGGTGCCCCAAGGAGGAAACACTGGCTTGGTGGG
GGGGAGTATCCCTACAGGCAACGAAGTCGTCCTTTCCCTGTCAAGGATGA
ACGAAATAATAAGTTTCGACCCCCTCTCCAGCGTCCTAACCTGTGAAGCG
GGCTGCATCCTCGAGCACCTCTCCCTCTTCCTCCGCCCCCACCAGCACAT
CATGCCCTTGGACCTGGGTGCCAAAGGGTCCTGCCAAATCGGTGGCAATG
TCAGCACCAACGCGGGCGGCCTCCGATATCTGCGGTACGGCTCTCTGCAT
GGAAATGTGTTGGGGCTCGAGGTGGTGCTAGCAGACGGAGAGGTGCTCAA
TTTACTCTCTACTTTACGAAAGGACAACACGGGCTATGATCTCAAGCAAT
TATTTATTGGTGCCGAAGGGACGCTAGGTGTGATAACCAAGATATCTATG
CATGTGCCACCGGCGCCAGCAGCAGTGAATGTGGCACTCGTGGGGTTGAA
TAGTTTCGAGCAGGTGAAGACGATGGTAGGGAGGACGAGAGAAAAATTGG
GGGAAATCTTGAGCGCGATGGAGTTGCTCGACGCTCAGAGCATGGAGATG
GTGGTGGGGAAGAAGGAGTGGGGTTTGCGTAATCCACTTGCTCTTTCCGC
TGCAGCTGCTGTAGACGCAGGAGGGGGCGGAGGGAGCGAGGTGGGAAGCG
AGGTGTCGCCTTACCCTTTTTACATCCTCCTCGAAACCGCAGGCAGCAAC
GAAGAGCACGATGAACAAAAACTGGAAAACCTCCTCACCCTTGCGTTAGA
AGAGGATATAATCGCCGATGGTACCCTCGCCCAAGACGTGAGCCAAGCCA
ATGATATTTGGAAGCTTAGGGAGTTGATCCCTGTGGCGATAGAAGAAGAA
GGAAGAGTACATAAATATGACGTTTCTGTGCCGTTAGATCGGTTTTATGA
GTTGGTGGAGAGGACGAGGGAGGGATTGAGGGAGGAAGGCTTTGGCGTGG
CTACAGCACAATCGGCAGGCGCTCCTGCAGGGGGAAGAAAGAAGGGAGAG
GAGGTTAAAGTGGTGGGGTACGGGCATTTGGGGGATTCGAATCTGCACCT
GAATGTCTCAGTGCCGCGGAATAAGCCGGACCCCCCCGGTGTAAGTCGTG
TGCTTGGTAGGGTGTTGCCATGGGTTATGAAGCAGGAGGGAAGCGTAAGT
GCAGAGCATGGGCTAGGGCAGTTGAAGAAGGAGTACTTGCCCTTGACGAA
GAGTAGGGCGGCGGTGGCGGCGATGAGGGGGATGAAGAAGATGCTGGATC
CCAAAGGTATTCTTAATCCAGGGAAGTTTTTCCCGGAGGAGAAGCCGTGA
ATGGCGAGGTCACCGATTATTTTCCTAGGCTGCACGGCGAAGCAGGTGCG
TCCGCGAGGGTTCGATCGAATGCGGGTCCGGCCTGTCGCCTCAGTCTCCT
GCCTCGTGTCGTCTAATGCGTCGTTCCACGCGCTAACCCATACAAGAGGC
CATCGGCCACGCTTTGCCATCAGCCCGCAAGAGTCTCGTGTCGCTTCCTT
CAAATCTGCGTCGCTATCAACATCCGTTACCCCCGCCGATATTGCCCACT
TCCGAGCCATCTTGGACCCCCCCGCCTCCTCCAGCTCAAATCATGGCAAG
ATCATCCTTCCCCCCTCCTCCCCCGACGATGATGACCTTCTCACACCATA
TACCCAAGACTGGACCCGGAAATGGAAAGCTCCTGCATGTCCTGCCGTCC
TTCAGCCCTGTACTACGGAGCAAGTGTCCGCGTTGCTTGCCTATTGCAAT
GGGCGGGGCATTGCAGTGGTGCCCCAAGGAGGAAACACTGGCTTGGTGGG
GGGGAGTATCCCTACAGGCAACGAAGTCGTCCTTTCCCTGTCAAGGATGA
ACGAAATAATAAGTTTCGACCCCCTCTCCAGCGTCCTAACCTGTGAAGCG
GGCTGCATCCTCGAGCACCTCTCCCTCTTCCTCCGCCCCCACCAGCACAT
CATGCCCTTGGACCTGGGTGCCAAAGGGTCCTGCCAAATCGGTGGCAATG
TCAGCACCAACGCGGGCGGCCTCCGATATCTGCGGTACGGCTCTCTGCAT
GGAAATGTGTTGGGGCTCGAGGTGGTGCTAGCAGACGGAGAGGTGCTCAA
TTTACTCTCTACTTTACGAAAGGACAACACGGGCTATGATCTCAAGCAAT
TATTTATTGGTGCCGAAGGGACGCTAGGTGTGATAACCAAGATATCTATG
CATGTGCCACCGGCGCCAGCAGCAGTGAATGTGGCACTCGTGGGGTTGAA
TAGTTTCGAGCAGGTGAAGACGATGGTAGGGAGGACGAGAGAAAAATTGG
GGGAAATCTTGAGCGCGATGGAGTTGCTCGACGCTCAGAGCATGGAGATG
GTGGTGGGGAAGAAGGAGTGGGGTTTGCGTAATCCACTTGCTCTTTCCGC
TGCAGCTGCTGTAGACGCAGGAGGGGGCGGAGGGAGCGAGGTGGGAAGCG
AGGTGTCGCCTTACCCTTTTTACATCCTCCTCGAAACCGCAGGCAGCAAC
GAAGAGCACGATGAACAAAAACTGGAAAACCTCCTCACCCTTGCGTTAGA
AGAGGATATAATCGCCGATGGTACCCTCGCCCAAGACGTGAGCCAAGCCA
ATGATATTTGGAAGCTTAGGGAGTTGATCCCTGTGGCGATAGAAGAAGAA
GGAAGAGTACATAAATATGACGTTTCTGTGCCGTTAGATCGGTTTTATGA
GTTGGTGGAGAGGACGAGGGAGGGATTGAGGGAGGAAGGCTTTGGCGTGG
CTACAGCACAATCGGCAGGCGCTCCTGCAGGGGGAAGAAAGAAGGGAGAG
GAGGTTAAAGTGGTGGGGTACGGGCATTTGGGGGATTCGAATCTGCACCT
GAATGTCTCAGTGCCGCGGAATAAGCCGGACCCCCCCGGTGTAAGTCGTG
TGCTTGGTAGGGTGTTGCCATGGGTTATGAAGCAGGAGGGAAGCGTAAGT
GCAGAGCATGGGCTAGGGCAGTTGAAGAAGGAGTACTTGCCCTTGACGAA
GAGTAGGGCGGCGGTGGCGGCGATGAGGGGGATGAAGAAGATGCTGGATC
CCAAAGGTATTCTTAATCCAGGGAAGTTTTTCCCGGAGGAGAAGCCGTGA

Synonyms

Publications