jgi.p|Nanoce1779_2|638504, mRNA_3923 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638504
Unique Name	mRNA_3923
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	768
Alignment location	scaffold_8:410114..411504 +

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Properties


Property Name	Value
TranscriptId	638590
Track	FilteredModels2
ProteinId	638504

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:410114..411504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638504	gene_3923	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638504	mRNA_3923-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3923	CDS_3923	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:410114..411504+
coding sequence from alignment at scaffold_8:410114..411504+

mRNA sequence

>mRNA_3923 ID=mRNA_3923|Name=jgi.p|Nanoce1779_2|638504|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGGTGGCGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCA
CGTCGGCTCGGTCGCCGCGTGTCTGCCTATCCACAAATACATAGATTTGG
TGCGGAGCGATGTCGGCAGGCGGGCGCAAGACCGCCTGAGGGGACGCAAC
CCTGTTGGTTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGAC
GGGGGGGTCAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGCAACA
ACGGAGGAGGCTTTAACGAGGTCAATTCTTATATTGAGTCGCAGCAACGA
CGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGA
GCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACA
AGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGAACGTGATGAA
TGGAGAGGCCGCTATGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGA
GAACAACCGACGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGT
ATGATTTTATGCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGT
GGTAGTGGTGGTGGTGGAGGAGGAGGAGTGACTCACATGGCGGAACGCGG
AGCATGCGCGCGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCG
AGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGTTGGCATAG

protein sequence of jgi.p|Nanoce1779_2|638504

>mRNA_3923-protein ID=mRNA_3923-protein|Name=jgi.p|Nanoce1779_2|638504|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MVAGMGLSPTRGGEVGHVGSVAACLPIHKYIDLVRSDVGRRAQDRLRGRN
PVGFRGSGPLFDRVHATGGSARRDDSATSSAGNNGGGFNEVNSYIESQQR
RIQELERINIDLERRLEQQARERMKLERESVENKRAWEAQHTNIGHERDE
WRGRYEKELLHMQKLRENNRRLERELHGFLQKKYDFMQMQSRSASGSTGG
GSGGGGGGGVTHMAERGACARRRWEAAVGEEESEEREGEAEEEEEEEEEE
ERELA*

mRNA from alignment at scaffold_8:410114..411504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3923 ID=mRNA_3923|Name=jgi.p|Nanoce1779_2|638504|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp|location=Sequence derived from alignment at scaffold_8:410114..411504+ (Nannochloropsis oceanica)
ATGGTGGCGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCA
CGTCGGCTCGGTCGCCGCGTCGGCAATGCATCACATCATACTCTTCCTGT
CCGTCTTGCTTTTGGTGCCGTAACCTACCCGCGCTCTGACCACACTCACA
GGTGTCTGCCTATCCACAAATACATAGATTTGGTGCGGAGCGATGTCGGC
AGGCGGGCGCAAGACCGCCTGAGGGGACGCGTGAGACGACATCATGGTGA
GTGCGCTACCACGGTCACGTTTATTCCTTGACTTATCCGTAAGACACTGC
CATCTTTGCATGCATTCCCGGTACCACCTTGCGTATATTATGCCCTTCTC
ATACAACCTGTCATCTTGTGGAAACAGAACCCTGTTGGTTTTCGTGGGTC
CGGACCGCTCTTTGATCGTGTTCATGCGACGGGGGGGTCAGCGCGGCGGG
ATGACAGCGCAACGAGCTCGGCGGGCAACAACGGAGGAGGCTTTAACGAG
GTCAATTCTTATATTGAGGTATGTGCGTCGGTGTATGTGAGAGTACAGAG
TAGTCGAAAGGGTGTCGATCAACTCGCATCCCGCTTTCTCATCGATACGC
TCCCACCCTTCCCTCCCTCCCTCCCTCGCTTCTCTCACCAATCAGTCGCA
GCAACGACGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCC
GCCTAGAGCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTG
GAGAACAAGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGTATG
TATTTTGCGTCTGGGGCGACAAGAGGAAAAATAGAGGAGCTCTGAGCGGG
CGTAGTAGCTGATAAGCTGCTCATTATCCTCATTTCTTTCTCTCCCTTCT
ATACATATGTACACATAAATGTATGTATTTATTACCTCTGTCCTGCTGTT
AACCTTCGTTTTCTATCTCTGTTTCCCTCCCTTTCCCTACCATCAACTAC
CACAGGAACGTGATGAATGGAGAGGCCGCTATGAGAAGGAACTCCTGCAC
ATGCAAAAACTCCGCGAGAACAACCGACGCCTAGAGCGAGAGCTGCATGG
TTTCCTTCAAAAGAAGTATGATTTTATGCAGATGCAGTCGAGGTCGGCCT
CGGGGAGCACTGGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGTAGGG
GGGGGGAGGGGGAACGAAAGGTGGGCAGCCACTTTTAAACGGACGGGAAG
GTGACTCACATGGCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGC
AGCGGTGGGCGAGGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGAGAGAGTTGGCATAG

Coding sequence (CDS) from alignment at scaffold_8:410114..411504+

>mRNA_3923 ID=mRNA_3923|Name=jgi.p|Nanoce1779_2|638504|organism=Nannochloropsis oceanica|type=CDS|length=4608bp|location=Sequence derived from alignment at scaffold_8:410114..411504+ (Nannochloropsis oceanica)
ATGGTGGCGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCA
CGTCGGCTCGGTCGCCGCGTGTCTGCCTATCCACAAATACATAGATTTGG
TGCGGAGCGATGTCGGCAGGCGGGCGCAAGACCGCCTGAGGGGACGCAAC
CCTGTTGGTTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGAC
GGGGGGGTCAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGCAACA
ACGGAGGAGGCTTTAACGAGGTCAATTCTTATATTGAGTCGCAGCAACGA
CGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGA
GCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACA
AGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGAACGTGATGAA
TGGAGAGGCCGCTATGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGA
GAACAACCGACGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGT
ATGATTTTATGCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGT
GGTAGTGGTGGTGGTGGAGGAGGAGGAGTGACTCACATGGCGGAACGCGG
AGCATGCGCGCGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCG
AGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGTTGGCATAGATGGTGGCGGGGATGGGTTTGAGCCCAACAAG
AGGAGGGGAGGTTGGGCACGTCGGCTCGGTCGCCGCGTGTCTGCCTATCC
ACAAATACATAGATTTGGTGCGGAGCGATGTCGGCAGGCGGGCGCAAGAC
CGCCTGAGGGGACGCAACCCTGTTGGTTTTCGTGGGTCCGGACCGCTCTT
TGATCGTGTTCATGCGACGGGGGGGTCAGCGCGGCGGGATGACAGCGCAA
CGAGCTCGGCGGGCAACAACGGAGGAGGCTTTAACGAGGTCAATTCTTAT
ATTGAGTCGCAGCAACGACGCATTCAAGAGCTAGAGCGGATTAACATCGA
TCTCGAGCGCCGCCTAGAGCAACAAGCTCGCGAGAGGATGAAGCTTGAGA
GGGAGTCCGTGGAGAACAAGCGGGCATGGGAGGCACAGCACACCAACATT
GGCCACGAACGTGATGAATGGAGAGGCCGCTATGAGAAGGAACTCCTGCA
CATGCAAAAACTCCGCGAGAACAACCGACGCCTAGAGCGAGAGCTGCATG
GTTTCCTTCAAAAGAAGTATGATTTTATGCAGATGCAGTCGAGGTCGGCC
TCGGGGAGCACTGGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGTGAC
TCACATGGCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGCAGCGG
TGGGCGAGGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAGAGAGTTGGCATAGATGGTGGCGGGGAT
GGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCACGTCGGCTCGGTCG
CCGCGTGTCTGCCTATCCACAAATACATAGATTTGGTGCGGAGCGATGTC
GGCAGGCGGGCGCAAGACCGCCTGAGGGGACGCAACCCTGTTGGTTTTCG
TGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGACGGGGGGGTCAGCGC
GGCGGGATGACAGCGCAACGAGCTCGGCGGGCAACAACGGAGGAGGCTTT
AACGAGGTCAATTCTTATATTGAGTCGCAGCAACGACGCATTCAAGAGCT
AGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGAGCAACAAGCTCGCG
AGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACAAGCGGGCATGGGAG
GCACAGCACACCAACATTGGCCACGAACGTGATGAATGGAGAGGCCGCTA
TGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGAGAACAACCGACGCC
TAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGTATGATTTTATGCAG
ATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGTGGTAGTGGTGGTGG
TGGAGGAGGAGGAGTGACTCACATGGCGGAACGCGGAGCATGCGCGCGGC
GACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCGAGGAGAGGGAGGGG
GAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGAGTTGGC
ATAGATGGTGGCGGGGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTG
GGCACGTCGGCTCGGTCGCCGCGTGTCTGCCTATCCACAAATACATAGAT
TTGGTGCGGAGCGATGTCGGCAGGCGGGCGCAAGACCGCCTGAGGGGACG
CAACCCTGTTGGTTTTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATG
CGACGGGGGGGTCAGCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGC
AACAACGGAGGAGGCTTTAACGAGGTCAATTCTTATATTGAGTCGCAGCA
ACGACGCATTCAAGAGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCC
TAGAGCAACAAGCTCGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAG
AACAAGCGGGCATGGGAGGCACAGCACACCAACATTGGCCACGAACGTGA
TGAATGGAGAGGCCGCTATGAGAAGGAACTCCTGCACATGCAAAAACTCC
GCGAGAACAACCGACGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAG
AAGTATGATTTTATGCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGG
AGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAGTGACTCACATGGCGGAAC
GCGGAGCATGCGCGCGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAG
AGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGAGAGAGTTGGCATAGATGGTGGCGGGGATGGGTTTGAGCCCAA
CAAGAGGAGGGGAGGTTGGGCACGTCGGCTCGGTCGCCGCGTGTCTGCCT
ATCCACAAATACATAGATTTGGTGCGGAGCGATGTCGGCAGGCGGGCGCA
AGACCGCCTGAGGGGACGCAACCCTGTTGGTTTTCGTGGGTCCGGACCGC
TCTTTGATCGTGTTCATGCGACGGGGGGGTCAGCGCGGCGGGATGACAGC
GCAACGAGCTCGGCGGGCAACAACGGAGGAGGCTTTAACGAGGTCAATTC
TTATATTGAGTCGCAGCAACGACGCATTCAAGAGCTAGAGCGGATTAACA
TCGATCTCGAGCGCCGCCTAGAGCAACAAGCTCGCGAGAGGATGAAGCTT
GAGAGGGAGTCCGTGGAGAACAAGCGGGCATGGGAGGCACAGCACACCAA
CATTGGCCACGAACGTGATGAATGGAGAGGCCGCTATGAGAAGGAACTCC
TGCACATGCAAAAACTCCGCGAGAACAACCGACGCCTAGAGCGAGAGCTG
CATGGTTTCCTTCAAAAGAAGTATGATTTTATGCAGATGCAGTCGAGGTC
GGCCTCGGGGAGCACTGGAGGTGGTAGTGGTGGTGGTGGAGGAGGAGGAG
TGACTCACATGGCGGAACGCGGAGCATGCGCGCGGCGACGATGGGAAGCA
GCGGTGGGCGAGGAGGAGAGCGAGGAGAGGGAGGGGGAGGCGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGAGAGTTGGCATAGATGGTGGCGG
GGATGGGTTTGAGCCCAACAAGAGGAGGGGAGGTTGGGCACGTCGGCTCG
GTCGCCGCGTGTCTGCCTATCCACAAATACATAGATTTGGTGCGGAGCGA
TGTCGGCAGGCGGGCGCAAGACCGCCTGAGGGGACGCAACCCTGTTGGTT
TTCGTGGGTCCGGACCGCTCTTTGATCGTGTTCATGCGACGGGGGGGTCA
GCGCGGCGGGATGACAGCGCAACGAGCTCGGCGGGCAACAACGGAGGAGG
CTTTAACGAGGTCAATTCTTATATTGAGTCGCAGCAACGACGCATTCAAG
AGCTAGAGCGGATTAACATCGATCTCGAGCGCCGCCTAGAGCAACAAGCT
CGCGAGAGGATGAAGCTTGAGAGGGAGTCCGTGGAGAACAAGCGGGCATG
GGAGGCACAGCACACCAACATTGGCCACGAACGTGATGAATGGAGAGGCC
GCTATGAGAAGGAACTCCTGCACATGCAAAAACTCCGCGAGAACAACCGA
CGCCTAGAGCGAGAGCTGCATGGTTTCCTTCAAAAGAAGTATGATTTTAT
GCAGATGCAGTCGAGGTCGGCCTCGGGGAGCACTGGAGGTGGTAGTGGTG
GTGGTGGAGGAGGAGGAGTGACTCACATGGCGGAACGCGGAGCATGCGCG
CGGCGACGATGGGAAGCAGCGGTGGGCGAGGAGGAGAGCGAGGAGAGGGA
GGGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGAGAGT
TGGCATAG

Synonyms

Publications