jgi.p|Nanoce1779_2|585843, mRNA_3921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585843
Unique NamemRNA_3921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1393
Alignment locationscaffold_8:405025..406804 -

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Properties
Property NameValue
TranscriptId585929
TrackFilteredModels2
ProteinId585843
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:405025..406804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585843gene_3921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585843mRNA_3921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3921CDS_3921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3921 ID=mRNA_3921|Name=jgi.p|Nanoce1779_2|585843|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp
AGCACAATGGCTGCCGCACGACCCCAAGTCTCTGTGTACAACGCGGAGGG
TGCCGCCGTGGCGGAGGTGCCCCTGCCTGCCGTCCTCACGGCTCCCATCC
GCCCGGACGTAGTCAAGTTCGTCTTCACCGGCCTCAACAAGAACCACCGT
CAGCCGTACGCCGTCTCCGAGAAAGCTGGCCATCAGACCTCCGCCGAGTC
GTGGGGAACGGGCCGCGCCGTCGCTCGTATTCCTCGTGTGGGTGGTGGAG
GAACCCAGCGCTCTGGGCAGGGTGCGTTTGGTAACATGTGCCGAAGTGGG
CGTATGTTTGCCCCCACCAAGATCTGGCGTCGTTGGCACCGTAAGATCAA
TATCACCCAGAAGCGTTATGCGGTTGCCTCGGCCTTGGCGGCGTCCGCTG
TCCCTGCTTTGGTAATGGCACGTGGGCACCGTGTGGACGGCGTGGCAGAG
ATCCCCTTCGTCCTCGACTCGACCTTCTCCAAACTCGACAAGACGGCGCA
AGCAGTCAAGGTTCTTGGTACCTTGGGCGTGGGCCCCGAGCTGGACAAGA
GCAAGGATTCCAAGAAGATTCGCGCAGGGAAGGGGAAGATGCGTAATCGT
CGGTACGTCCTCCGCCGTGGCCCCCTCGTCATCTACAACACGGGCGAGGA
AGGAGTGGTCAAGGCCGTGCGTAACATCGTGGGTGTTGAAGCCGCGCATG
TCGATAGGTTGAACTTGCTGCAGTTGGCGCCGGGGGGACATCTTGGCAGG
TTCTGCATCTGGACGCAGGGTGCGTTTGAGAAGTTAGATTCCGTGTTCGG
AACTCAGACGGAAAAGAGCCAGGTCAAGCTTGACTACGTCTTGCCCCGTG
CCCCCATGGCCAATGCCGATCTAGCCCGCATCATTAACAGCGAAGAGATC
CAATCCGTTGTCCGCCCGGCGGTGACGGAGACGGTGCGTCTGCCCAGGAA
GAAGAACCCTCTGAAGAATCTGTCCGCCATGGTGCGGCTGAACCCTTATG
TGCTGATTCACCGTCGTCAGGAGCTTAAGCGGGCTGCAGCCGCCGCCGAG
GCGAAGAAGGGAGGGAAAAAAGGGGGGAAGAGCAAGGAGGAGAGGAAGAC
CAGGAAGGCGGCAGGCAGGGCATTCTATGAAGTCGCGGTGAAGGACGGGG
AGATCAAGTTTTAAACAGAAGAGAGGGAGAAAGGGTGGAGGAAAGGTGGA
GCGGAATGCTGAGAGGTGTTATTTTGAGGGGGAGGGGAGGCAAGGCGAGG
ACATTAGGAGAGGGAAGAGAAGGAGGCTGATGTTGTGTGCCTTTTCTGGC
TCCTGAATTCTTGCTTCGTGGATTTTTCCTGGCCTTGCAGGATTATTGAG
GCTCTCAAAGATGGAAAGTTCCCGTGAGGGATTAATTGGAAAA
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protein sequence of jgi.p|Nanoce1779_2|585843

>mRNA_3921-protein ID=mRNA_3921-protein|Name=jgi.p|Nanoce1779_2|585843|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MAAARPQVSVYNAEGAAVAEVPLPAVLTAPIRPDVVKFVFTGLNKNHRQP
YAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRM
FAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHRVDGVAEIP
FVLDSTFSKLDKTAQAVKVLGTLGVGPELDKSKDSKKIRAGKGKMRNRRY
VLRRGPLVIYNTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFC
IWTQGAFEKLDSVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEIQS
VVRPAVTETVRLPRKKNPLKNLSAMVRLNPYVLIHRRQELKRAAAAAEAK
KGGKKGGKSKEERKTRKAAGRAFYEVAVKDGEIKF*
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mRNA from alignment at scaffold_8:405025..406804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3921 ID=mRNA_3921|Name=jgi.p|Nanoce1779_2|585843|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at scaffold_8:405025..406804- (Nannochloropsis oceanica)
AGCACAATGGCTGCCGCACGACCCCAAGTCTCTGTGTACAACGCGGAGGG
TGCCGCCGTGGCGGAGGTGCCCCTGCCTGCCGTCCTCACGGTGAGTCGAT
GTAGAGAGGAGCGAGAAGACGAGGGAGGGAGGGAGGGAGGGAATTAGTGC
CAGGTTTGTCTACCTTCGGCCAGTACCGCATCGCGTTTAGGAGCTCTACT
TGCATCATATTATTGTACGACTACCTTTGTATGTGTGCGGAGGGTACTGC
GTGTTCTTGTCGATGGTGTTGCGGGACGTCTGCGCAGCATCATCATCGAC
GGTCACTGTTGTGCAGTCTGTCTGTCTTTCATGCCAGCAAAACAATGGAC
GTAGCTTCTGGACACATCAATCCTCAATCTATACATTAGCACAGAGCTTC
TTTTAGCTCAAATATCCTTCCTTTCTTGCCACCCAACATAATCACTCACT
TTCAACCCTCCCTCCCCTTCCTCCTAGGCTCCCATCCGCCCGGACGTAGT
CAAGTTCGTCTTCACCGGCCTCAACAAGAACCACCGTCAGCCGTACGCCG
TCTCCGAGAAAGCTGGCCATCAGACCTCCGCCGAGTCGTGGGGAACGGGC
CGCGCCGTCGCTCGTATTCCTCGTGTGGGTGGTGGAGGAACCCAGCGCTC
TGGGCAGGGTGCGTTTGGTAACATGTGCCGAAGTGGGCGTATGTTTGCCC
CCACCAAGATCTGGCGTCGTTGGCACCGTAAGATCAATATCACCCAGAAG
CGTTATGCGGTTGCCTCGGCCTTGGCGGCGTCCGCTGTCCCTGCTTTGGT
AATGGCACGTGGGCACCGTGTGGACGGCGTGGCAGAGATCCCCTTCGTCC
TCGACTCGACCTTCTCCAAACTCGACAAGACGGCGCAAGCAGTCAAGGTT
CTTGGTACCTTGGGCGTGGGCCCCGAGCTGGACAAGAGCAAGGATTCCAA
GAAGATTCGCGCAGGGAAGGGGAAGATGCGTAATCGTCGGTACGTCCTCC
GCCGTGGCCCCCTCGTCATCTACAACACGGGCGAGGAAGGAGTGGTCAAG
GCCGTGCGTAACATCGTGGGTGTTGAAGCCGCGCATGTCGATAGGTTGAA
CTTGCTGCAGTTGGCGCCGGGGGGACATCTTGGCAGGTTCTGCATCTGGA
CGCAGGGTGCGTTTGAGAAGTTAGATTCCGTGTTCGGAACTCAGACGGAA
AAGAGCCAGGTCAAGCTTGACTACGTCTTGCCCCGTGCCCCCATGGCCAA
TGCCGATCTAGCCCGCATCATTAACAGCGAAGAGATCCAATCCGTTGTCC
GCCCGGCGGTGACGGAGACGGTGCGTCTGCCCAGGAAGAAGAACCCTCTG
AAGAATCTGTCCGCCATGGTGCGGCTGAACCCTTATGTGCTGATTCACCG
TCGTCAGGAGCTTAAGCGGGCTGCAGCCGCCGCCGAGGCGAAGAAGGGAG
GGAAAAAAGGGGGGAAGAGCAAGGAGGAGAGGAAGACCAGGAAGGCGGCA
GGCAGGGCATTCTATGAAGTCGCGGTGAAGGACGGGGAGATCAAGTTTTA
AACAGAAGAGAGGGAGAAAGGGTGGAGGAAAGGTGGAGCGGAATGCTGAG
AGGTGTTATTTTGAGGGGGAGGGGAGGCAAGGCGAGGACATTAGGAGAGG
GAAGAGAAGGAGGCTGATGTTGTGTGCCTTTTCTGGCTCCTGAATTCTTG
CTTCGTGGATTTTTCCTGGCCTTGCAGGATTATTGAGGCTCTCAAAGATG
GAAAGTTCCCGTGAGGGATTAATTGGAAAA
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Coding sequence (CDS) from alignment at scaffold_8:405025..406804-

>mRNA_3921 ID=mRNA_3921|Name=jgi.p|Nanoce1779_2|585843|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_8:405025..406804- (Nannochloropsis oceanica)
GCTCCCATCCGCCCGGACGTAGTCAAGTTCGTCTTCACCGGCCTCAACAA
GAACCACCGTCAGCCGTACGCCGTCTCCGAGAAAGCTGGCCATCAGACCT
CCGCCGAGTCGTGGGGAACGGGCCGCGCCGTCGCTCGTATTCCTCGTGTG
GGTGGTGGAGGAACCCAGCGCTCTGGGCAGGGTGCGTTTGGTAACATGTG
CCGAAGTGGGCGTATGTTTGCCCCCACCAAGATCTGGCGTCGTTGGCACC
GTAAGATCAATATCACCCAGAAGCGTTATGCGGTTGCCTCGGCCTTGGCG
GCGTCCGCTGTCCCTGCTTTGGTAATGGCACGTGGGCACCGTGTGGACGG
CGTGGCAGAGATCCCCTTCGTCCTCGACTCGACCTTCTCCAAACTCGACA
AGACGGCGCAAGCAGTCAAGGTTCTTGGTACCTTGGGCGTGGGCCCCGAG
CTGGACAAGAGCAAGGATTCCAAGAAGATTCGCGCAGGGAAGGGGAAGAT
GCGTAATCGTCGGTACGTCCTCCGCCGTGGCCCCCTCGTCATCTACAACA
CGGGCGAGGAAGGAGTGGTCAAGGCCGTGCGTAACATCGTGGGTGTTGAA
GCCGCGCATGTCGATAGGTTGAACTTGCTGCAGTTGGCGCCGGGGGGACA
TCTTGGCAGGTTCTGCATCTGGACGCAGGGTGCGTTTGAGAAGTTAGATT
CCGTGTTCGGAACTCAGACGGAAAAGAGCCAGGTCAAGCTTGACTACGTC
TTGCCCCGTGCCCCCATGGCCAATGCCGATCTAGCCCGCATCATTAACAG
CGAAGAGATCCAATCCGTTGTCCGCCCGGCGGTGACGGAGACGGTGCGTC
TGCCCAGGAAGAAGAACCCTCTGAAGAATCTGTCCGCCATGGTGCGGCTG
AACCCTTATGTGCTGATTCACCGTCGTCAGGAGCTTAAGCGGGCTGCAGC
CGCCGCCGAGGCGAAGAAGGGAGGGAAAAAAGGGGGGAAGAGCAAGGAGG
AGAGGAAGACCAGGAAGGCGGCAGGCAGGGCATTCTATGAAGTCGCGGTG
AAGGACGGGGAGATCAAGTTTTAAATGGCTGCCGCACGACCCCAAGTCTC
TGTGTACAACGCGGAGGGTGCCGCCGTGGCGGAGGTGCCCCTGCCTGCCG
TCCTCACGGCTCCCATCCGCCCGGACGTAGTCAAGTTCGTCTTCACCGGC
CTCAACAAGAACCACCGTCAGCCGTACGCCGTCTCCGAGAAAGCTGGCCA
TCAGACCTCCGCCGAGTCGTGGGGAACGGGCCGCGCCGTCGCTCGTATTC
CTCGTGTGGGTGGTGGAGGAACCCAGCGCTCTGGGCAGGGTGCGTTTGGT
AACATGTGCCGAAGTGGGCGTATGTTTGCCCCCACCAAGATCTGGCGTCG
TTGGCACCGTAAGATCAATATCACCCAGAAGCGTTATGCGGTTGCCTCGG
CCTTGGCGGCGTCCGCTGTCCCTGCTTTGGTAATGGCACGTGGGCACCGT
GTGGACGGCGTGGCAGAGATCCCCTTCGTCCTCGACTCGACCTTCTCCAA
ACTCGACAAGACGGCGCAAGCAGTCAAGGTTCTTGGTACCTTGGGCGTGG
GCCCCGAGCTGGACAAGAGCAAGGATTCCAAGAAGATTCGCGCAGGGAAG
GGGAAGATGCGTAATCGTCGGTACGTCCTCCGCCGTGGCCCCCTCGTCAT
CTACAACACGGGCGAGGAAGGAGTGGTCAAGGCCGTGCGTAACATCGTGG
GTGTTGAAGCCGCGCATGTCGATAGGTTGAACTTGCTGCAGTTGGCGCCG
GGGGGACATCTTGGCAGGTTCTGCATCTGGACGCAGGGTGCGTTTGAGAA
GTTAGATTCCGTGTTCGGAACTCAGACGGAAAAGAGCCAGGTCAAGCTTG
ACTACGTCTTGCCCCGTGCCCCCATGGCCAATGCCGATCTAGCCCGCATC
ATTAACAGCGAAGAGATCCAATCCGTTGTCCGCCCGGCGGTGACGGAGAC
GGTGCGTCTGCCCAGGAAGAAGAACCCTCTGAAGAATCTGTCCGCCATGG
TGCGGCTGAACCCTTATGTGCTGATTCACCGTCGTCAGGAGCTTAAGCGG
GCTGCAGCCGCCGCCGAGGCGAAGAAGGGAGGGAAAAAAGGGGGGAAGAG
CAAGGAGGAGAGGAAGACCAGGAAGGCGGCAGGCAGGGCATTCTATGAAG
TCGCGGTGAAGGACGGGGAGATCAAGTTTTAAATGGCTGCCGCACGACCC
CAAGTCTCTGTGTACAACGCGGAGGGTGCCGCCGTGGCGGAGGTGCCCCT
GCCTGCCGTCCTCACG
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Synonyms
Publications