jgi.p|Nanoce1779_2|577194, mRNA_392 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577194
Unique NamemRNA_392
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_3:977018..978126 -

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Properties
Property NameValue
TranscriptId577280
TrackFilteredModels2
ProteinId577194
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:977018..978126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577194gene_392Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577194mRNA_392-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_392CDS_392Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_392 ID=mRNA_392|Name=jgi.p|Nanoce1779_2|577194|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
AGCGAGGCTGCATCGCTTGTGTAAGCATTTCGAAGGGAGTCAGGTCGAGG
AATGGGAAGTGGTTCTGTTGCTTGATCGAAGGGAGCATGATAAAAATCCG
AGCATCGAGAGGGGGCTGATCCAGGCGGGGGTAAGGTGCGAGCTTCGTGT
GCTGCAGTTGGGTGATATGATGTGGGTGGTACGGAGACGACAAGTGAGCA
GCGGCAGCAGCAGTAGTAGTAGTGGTGGTAGTAGTAGCAGCAGCAGCGGC
GGCAGTGGTGATGGTGGTGGAACCAGAAGTAAGCAGCAGGAGAAGGCAAA
GAAGAAAATGGAGAACCAGGAGGTGGTTCTCCGGTATATGTGCGAACGCA
AGACCGTTGGAGATCTCGCTGCCAGCATTAAAGATGGGAGGTATAAGGAA
CAGAAAGGGCGTATGTTGGGGGTTGGAAAGGAAGTAGATCGGTCTTTTTA
TCTGGTGGAGGGGACATTTGAGCAGTTGAATGATATTGTTCGTCCGCCCG
CTTTACGGACGGCCATGGCTACGACGCAGATCATACACGGGCTGCCTGTG
TTGAGGACGCCGAGCTTGGATCAGACGATTTCGTTGTTGCTCCGGATGCA
TACTAGGATTGTGCAGGAGATGAAGACATTCTTGAACGTGGCTTGTAGAG
GAATAGGCGGAGGGGGAGGAGAAGAGGGAGGGCGAGTGGAATATATGGAG
AAGCATTTATGTGCCTTGCCGTTGCCGCCTTCGAGGATAATTTCCTTAGG
GGAGTACCAGGAGAGGTGTAAGAAGACGGCAGGGGACTTGAGCGTGCAAA
CCATGTTTTTGGTTCAATTATGTGCCATAAATAAGGTTAGTGAGGCGAAG
AGTAAGGCTATCGTGAGTGTTTATCCAACCCCGCATGCATTGGCTAAGGC
GATGAGAGAGATGAGTGAAGACGAGGCGGTTGCGGCGTTGGCCAAGTTAC
CCGTGGCGGGACAAAGGCAGTCGCTGGGGAGGGTGGCGGCTGTGAATATA
TATAAGATGTATCGGTAGTGGGGGATTAGATTGTGGATGGACGAAGATAG
GTGGTAAAAAGGGGTGGCAGATATGAAGCACGGCAACATAAGTCTTGCAT
GCTTTTCGG
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protein sequence of jgi.p|Nanoce1779_2|577194

>mRNA_392-protein ID=mRNA_392-protein|Name=jgi.p|Nanoce1779_2|577194|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MMWVVRRRQVSSGSSSSSSGGSSSSSSGGSGDGGGTRSKQQEKAKKKMEN
QEVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGT
FEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQ
EMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQER
CKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMS
EDEAVAALAKLPVAGQRQSLGRVAAVNIYKMYR*
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mRNA from alignment at scaffold_3:977018..978126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_392 ID=mRNA_392|Name=jgi.p|Nanoce1779_2|577194|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at scaffold_3:977018..978126- (Nannochloropsis oceanica)
AGCGAGGCTGCATCGCTTGTGTAAGCATTTCGAAGGGAGTCAGGTCGAGG
AATGGGAAGTGGTTCTGTTGCTTGATCGAAGGGAGCATGATAAAAATCCG
AGCATCGAGAGGGGGCTGATCCAGGCGGGGGTAAGGTGCGAGCTTCGTGT
GCTGCAGTTGGGTGATATGATGTGGGTGGTACGGAGACGACAAGTGAGCA
GCGGCAGCAGCAGTAGTAGTAGTGGTGGTAGTAGTAGCAGCAGCAGCGGC
GGCAGTGGTGATGGTGGTGGAACCAGAAGTAAGCAGCAGGAGAAGGCAAA
GAAGAAAATGGAGAACCAGGAGGTGGTTCTCCGGTATATGTGCGAACGCA
AGACCGTTGGAGATCTCGCTGCCAGCATTAAAGATGGGAGGTATAAGGAA
CAGAAAGGGCGTATGTTGGGGGTTGGAAAGGAAGTAGATCGGTCTTTTTA
TCTGGTGGAGGGGACATTTGAGCAGTTGAATGATATTGTTCGTCCGCCCG
CTTTACGGACGGCCATGGCTACGACGCAGATCATACACGGGCTGCCTGTG
TTGAGGACGCCGAGCTTGGATCAGACGATTTCGTTGTTGCTCCGGATGCA
TACTAGGATTGTGCAGGAGATGAAGACATTCTTGAACGTGGCTTGTAGAG
GAATAGGCGGAGGGGGAGGAGAAGAGGGAGGGCGAGTGGAATATATGGAG
AAGCATTTATGTGCCTTGCCGTTGCCGCCTTCGAGGATAATTTCCTTAGG
GGAGTACCAGGAGAGGTGTAAGAAGACGGCAGGGGACTTGAGCGTGCAAA
CCATGTTTTTGGTTCAATTATGTGCCATAAATAAGGTTAGTGAGGCGAAG
AGTAAGGCTATCGTGAGTGTTTATCCAACCCCGCATGCATTGGCTAAGGC
GATGAGAGAGATGAGTGAAGACGAGGCGGTTGCGGCGTTGGCCAAGTTAC
CCGTGGCGGGACAAAGGCAGTCGCTGGGGAGGGTGGCGGCTGTGAATATA
TATAAGATGTATCGGTAGTGGGGGATTAGATTGTGGATGGACGAAGATAG
GTGGTAAAAAGGGGTGGCAGATATGAAGCACGGCAACATAAGTCTTGCAT
GCTTTTCGG
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Coding sequence (CDS) from alignment at scaffold_3:977018..978126-

>mRNA_392 ID=mRNA_392|Name=jgi.p|Nanoce1779_2|577194|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_3:977018..978126- (Nannochloropsis oceanica)
ATGATGTGGGTGGTACGGAGACGACAAGTGAGCAGCGGCAGCAGCAGTAG
TAGTAGTGGTGGTAGTAGTAGCAGCAGCAGCGGCGGCAGTGGTGATGGTG
GTGGAACCAGAAGTAAGCAGCAGGAGAAGGCAAAGAAGAAAATGGAGAAC
CAGGAGGTGGTTCTCCGGTATATGTGCGAACGCAAGACCGTTGGAGATCT
CGCTGCCAGCATTAAAGATGGGAGGTATAAGGAACAGAAAGGGCGTATGT
TGGGGGTTGGAAAGGAAGTAGATCGGTCTTTTTATCTGGTGGAGGGGACA
TTTGAGCAGTTGAATGATATTGTTCGTCCGCCCGCTTTACGGACGGCCAT
GGCTACGACGCAGATCATACACGGGCTGCCTGTGTTGAGGACGCCGAGCT
TGGATCAGACGATTTCGTTGTTGCTCCGGATGCATACTAGGATTGTGCAG
GAGATGAAGACATTCTTGAACGTGGCTTGTAGAGGAATAGGCGGAGGGGG
AGGAGAAGAGGGAGGGCGAGTGGAATATATGGAGAAGCATTTATGTGCCT
TGCCGTTGCCGCCTTCGAGGATAATTTCCTTAGGGGAGTACCAGGAGAGG
TGTAAGAAGACGGCAGGGGACTTGAGCGTGCAAACCATGTTTTTGGTTCA
ATTATGTGCCATAAATAAGGTTAGTGAGGCGAAGAGTAAGGCTATCGTGA
GTGTTTATCCAACCCCGCATGCATTGGCTAAGGCGATGAGAGAGATGAGT
GAAGACGAGGCGGTTGCGGCGTTGGCCAAGTTACCCGTGGCGGGACAAAG
GCAGTCGCTGGGGAGGGTGGCGGCTGTGAATATATATAAGATGTATCGGT
AG
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Synonyms
Publications