|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 527001 |
| Track | FilteredModels2 |
| ProteinId | 526915 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:403642..404589 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3919 ID=mRNA_3919|Name=jgi.p|Nanoce1779_2|526915|organism=Nannochloropsis oceanica|type=mRNA|length=699bp
ATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAGCGCCTCTCC
TCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGAAGGCCAAAA
TCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTCCGAGGAAAG
ATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTTTATTTTCGT
CGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGCTAAAGGAGG
AAGGGGAGGAGAAAGGGGAGCGGGGGAGGAGCTGGTGGCATTGGACTGAT
ACCATTACGGATGGCTCATTGCAGCCGAGGCCGAGCAAGGCTCTCCACTA
CACGGGTCTGCATGAGAAAACCCTGCCCTTCCTCAGACAGGCCCTCGCCG
AGCACGAACCAGACGGGTTGTTCGCTTTCTCACAGGGAGCAACGGCAGCA
GCGCTTTTATTGGGAGCGGAGGGAGGGCCGACAGTGCCCACTCTCTTTGT
GGGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAGGGAGTTAA
TGGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTGAGGACGGG
AGGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCGACATGGAA
GGGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTACCACTAA back to topprotein sequence of jgi.p|Nanoce1779_2|526915 >mRNA_3919-protein ID=mRNA_3919-protein|Name=jgi.p|Nanoce1779_2|526915|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MSSSSSSSSSINNSASPPPLPSSPQPTHRRKAKILCLHGYLQSASVFRGK
IGSLRKGLKSKAEFIFVDAPFVAQVLPSDALKEEGEEKGERGRSWWHWTD
TITDGSLQPRPSKALHYTGLHEKTLPFLRQALAEHEPDGLFAFSQGATAA
ALLLGAEGGPTVPTLFVGGEADFLVPLERTRELMGCWAKEGGREGGGEDG
RVKLHVHGGGHFVPTWKGLFKEEVVRFIEKYH* back to topmRNA from alignment at scaffold_8:403642..404589+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3919 ID=mRNA_3919|Name=jgi.p|Nanoce1779_2|526915|organism=Nannochloropsis oceanica|type=mRNA|length=948bp|location=Sequence derived from alignment at scaffold_8:403642..404589+ (Nannochloropsis oceanica)
ATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAGCGCCTCTCC
TCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGAAGGCCAAAA
TCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTCCGAGGAAAG
ATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTTTATTTTCGT
CGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGCTGTTGAAGG
CGGTTGGGGGCCAGGTTTGCATTGGAAAGGAGAAGGAGGGAGGGAAGGAG
GGCGCGGAGGAGCTCTCGACAGGAGTGACAGGTTTGAAGGTCACAGAAAA
GGAGGAGAATAGAAAGGAGGAAGGGGAGGAGAAAGGGGAGCGGGGGAGGA
GCTGGTGGCATTGGACTGATACCATTACGGATGGCTCATTGCAGCCGAGG
CCGAGCAAGGCTCTCCACTACACGGGTCTGCATGAGAAAACCCTGCCCTT
CCTCAGACAGGCCCTCGCCGAGCACGAACCAGACGGGTTGTTCGCTTTCT
CACAGGGAGCAACGGCAGCAGCGCTTTTATTGGGAGCGTTGCAGAAGGAG
TTTTTGAGGGAGGGAGGGATGGGTGGAGGGGGGAAGGGAGGGGTGGTTAT
GCCTAAGTTTGCGATTTTGGTCGGGGGGTTCTATCCGAGGGATAAGGAAG
TGGGGGAGGGATTGAGGGAGGGAGGGCCGACAGTGCCCACTCTCTTTGTG
GGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAGGGAGTTAAT
GGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTGAGGACGGGA
GGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCGACATGGAAG
GGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTACCACTAA back to topCoding sequence (CDS) from alignment at scaffold_8:403642..404589+ >mRNA_3919 ID=mRNA_3919|Name=jgi.p|Nanoce1779_2|526915|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at scaffold_8:403642..404589+ (Nannochloropsis oceanica)
ATGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAGCGCCTCTCC
TCCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGAAGGCCAAAA
TCCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTCCGAGGAAAG
ATTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTTTATTTTCGT
CGACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGCTAAAGGAGG
AAGGGGAGGAGAAAGGGGAGCGGGGGAGGAGCTGGTGGCATTGGACTGAT
ACCATTACGGATGGCTCATTGCAGCCGAGGCCGAGCAAGGCTCTCCACTA
CACGGGTCTGCATGAGAAAACCCTGCCCTTCCTCAGACAGGCCCTCGCCG
AGCACGAACCAGACGGGTTGTTCGCTTTCTCACAGGGAGCAACGGCAGCA
GCGCTTTTATTGGGAGCGGAGGGAGGGCCGACAGTGCCCACTCTCTTTGT
GGGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAGGGAGTTAA
TGGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTGAGGACGGG
AGGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCGACATGGAA
GGGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTACCACTAAA
TGTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAGCGCCTCTCCT
CCCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGAAGGCCAAAAT
CCTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTCCGAGGAAAGA
TTGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTTTATTTTCGTC
GACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGCTAAAGGAGGA
AGGGGAGGAGAAAGGGGAGCGGGGGAGGAGCTGGTGGCATTGGACTGATA
CCATTACGGATGGCTCATTGCAGCCGAGGCCGAGCAAGGCTCTCCACTAC
ACGGGTCTGCATGAGAAAACCCTGCCCTTCCTCAGACAGGCCCTCGCCGA
GCACGAACCAGACGGGTTGTTCGCTTTCTCACAGGGAGCAACGGCAGCAG
CGCTTTTATTGGGAGCGGAGGGAGGGCCGACAGTGCCCACTCTCTTTGTG
GGAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAGGGAGTTAAT
GGGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTGAGGACGGGA
GGGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCGACATGGAAG
GGGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTACCACTAAAT
GTCCAGCAGCAGCAGCAGCAGCAGCAGCATCAACAACAGCGCCTCTCCTC
CCCCTCTCCCTTCCTCCCCTCAACCAACCCACAGACGGAAGGCCAAAATC
CTGTGCTTACACGGGTACCTCCAATCGGCCTCTGTTTTCCGAGGAAAGAT
TGGGAGTCTGAGGAAAGGGCTTAAGTCCAAAGCGGAGTTTATTTTCGTCG
ACGCCCCCTTCGTGGCTCAAGTCCTGCCGTCGGATGCGCTAAAGGAGGAA
GGGGAGGAGAAAGGGGAGCGGGGGAGGAGCTGGTGGCATTGGACTGATAC
CATTACGGATGGCTCATTGCAGCCGAGGCCGAGCAAGGCTCTCCACTACA
CGGGTCTGCATGAGAAAACCCTGCCCTTCCTCAGACAGGCCCTCGCCGAG
CACGAACCAGACGGGTTGTTCGCTTTCTCACAGGGAGCAACGGCAGCAGC
GCTTTTATTGGGAGCGGAGGGAGGGCCGACAGTGCCCACTCTCTTTGTGG
GAGGGGAGGCAGATTTCTTAGTCCCCTTGGAGCGGACGAGGGAGTTAATG
GGGTGTTGGGCGAAGGAGGGAGGGAGGGAGGGAGGGGGTGAGGACGGGAG
GGTGAAGTTGCATGTGCACGGTGGAGGCCATTTCGTGCCGACATGGAAGG
GGCTTTTTAAGGAGGAGGTGGTGCGTTTTATCGAGAAGTACCACTAA back to top
|