jgi.p|Nanoce1779_2|418395, mRNA_3918 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|418395
Unique Name	mRNA_3918
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1270
Alignment location	scaffold_8:401774..403176 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	418481
Track	FilteredModels2
ProteinId	418395

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:401774..403176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|418395	gene_3918	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|418395	mRNA_3918-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3918	CDS_3918	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:401774..403176+
coding sequence from alignment at scaffold_8:401774..403176+

mRNA sequence

>mRNA_3918 ID=mRNA_3918|Name=jgi.p|Nanoce1779_2|418395|organism=Nannochloropsis oceanica|type=mRNA|length=1270bp
TGTGGGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCTCGTTCTTTC
AAGCACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACGAAATGCGAC
AAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCG
GTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCT
GATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAGCAACCGAGG
ATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCC
ACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGCCCCGAAGAC
AGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGCCCCGTTGCA
ACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCGGCGGTTAAA
GACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGA
ACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATCTGGTAGAGG
GGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAGGGAGATTTC
TTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAATGTGAAGAG
GTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGAGGGTTTTAG
ACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGA
GGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAAGGTCGCGGA
GGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGG
ATGCATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTGCAACTAGGC
GCACTGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGGCCGGTTCCC
TGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGAAAGTGCGGA
GGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAGGAGGAGGAT
GAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTCATCTTGATG
TCCCTGTGCTTTTAAAAAAGAAAAAGTTGAGGGTTTTTGGACATGGAGGA
TGGGAGGGAAGGAGGGATGAGCAACAACGATGAGAGACCCTGCTTAAAAG
TCGACATATTGGCTCTACCAGTGGCTATTACGTATGCCGCATACACAGGA
AGACAGAGACTGAGCCATGT

protein sequence of jgi.p|Nanoce1779_2|418395

>mRNA_3918-protein ID=mRNA_3918-protein|Name=jgi.p|Nanoce1779_2|418395|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MRQSCDSLLAALAALVDPAVGGTAAARAGAGAGAPLMELYCQQTRAVLRA
TEDLIKHITSVSSNLLSSPTPRQSPLGVQTELAPKTGVVWEQCDKLGKLP
RCNKVAFRRAFFNHYSAVKDTLREFEELLQEEAEEERTEGEEEEEEDDDL
VEGVQDIELTGEEDEEGDFFGGERRMKEWERENVKRCLVALGHCGEMIKR
VLDTVDEAMTEEGGEGGEGGREEGQEEGERIQKVAEVEESCQGLAAAVVN
AADALYPPQIRQELELQLGALVAAAAHTAAAVGRFPAGSASRNCQEEMEK
VRRAAARGVAEGTEGEEEDEEKGEDEEAGGEVSS*

mRNA from alignment at scaffold_8:401774..403176+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3918 ID=mRNA_3918|Name=jgi.p|Nanoce1779_2|418395|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at scaffold_8:401774..403176+ (Nannochloropsis oceanica)
TGTGGGGAGCGAGTCCGCGATACGGCCACCAAATTTAGCCTCGTTCTTTC
AAGCACCACCGGTGGCCCAGGCATTAAAGCTATATCTAACGAAATGCGAC
AAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTCGACCCTGCG
GTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGGAGCACCTCT
GATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAGCAACCGAGG
ATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTCCTCTCCTCTCCC
ACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGCCCCGAAGAC
AGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGCCCCGTTGCA
ACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCGGCGGTTAAA
GACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGCAGAGGAAGA
ACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATCTGGTAGAGG
GGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAGGGAGATTTC
TTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAATGTGAAGAG
GTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGAGGGTTTTAG
ACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGAGGGGAGGGA
GGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAAGGTCGCGGA
GGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGAATGCGGCGG
ATGCATTGTACCCGCCTCAAGTAGGAAAGGGAGGGAGGGAGGGGGGGAGC
ATTGGTTCATTATCCATATGTGTCTTCAAGAGAGATACAAAAATGTGCAT
TTGGGCTGGCCCATCTCACCTTCATTTCCTCCTTTCCTCTTCCCCGCTCT
TAGATACGGCAAGAGCTCGAATTGCAACTAGGCGCACTGGTGGCCGCAGC
AGCGCACACAGCAGCAGCAGTGGGCCGGTTCCCTGCGGGCTCGGCTTCTA
GAAACTGCCAAGAGGAGATGGAGAAAGTGCGGAGGGCCGCAGCGCGTGGT
GTGGCGGAGGGAACGGAAGGCGAGGAGGAGGATGAGGAGAAAGGGGAGGA
TGAAGAGGCTGGTGGAGAGGTCTCATCTTGATGTCCCTGTGCTTTTAAAA
AAGAAAAAGTTGAGGGTTTTTGGACATGGAGGATGGGAGGGAAGGAGGGA
TGAGCAACAACGATGAGAGACCCTGCTTAAAAGTCGACATATTGGCTCTA
CCAGTGGCTATTACGTATGCCGCATACACAGGAAGACAGAGACTGAGCCA
TGT

Coding sequence (CDS) from alignment at scaffold_8:401774..403176+

>mRNA_3918 ID=mRNA_3918|Name=jgi.p|Nanoce1779_2|418395|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_8:401774..403176+ (Nannochloropsis oceanica)
ATGCGACAAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTAGTCGA
CCCTGCGGTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGCGGGAG
CACCTCTGATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAAGAGCA
ACCGAGGATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTCCTCTC
CTCTCCCACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTTGGCCC
CGAAGACAGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGTTGCCC
CGTTGCAACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTATTCGGC
GGTTAAAGACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGAGGCAG
AGGAAGAACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACGATCTG
GTAGAGGGGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAGGAGGG
AGATTTCTTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGAGAATG
TGAAGAGGTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCAAGAGG
GTTTTAGACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAGGGAGG
GGAGGGAGGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACAGAAGG
TCGCGGAGGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCGTGAAT
GCGGCGGATGCATTGTACCCGCCTCAAATACGGCAAGAGCTCGAATTGCA
ACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGTGGGCC
GGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGGAGAAA
GTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGCGAGGA
GGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGTCTCAT
CTTGAATGCGACAAAGCTGTGATTCTCTTCTCGCCGCTTTGGCAGCCTTA
GTCGACCCTGCGGTAGGAGGAACAGCAGCAGCAAGAGCAGGAGCAGGAGC
GGGAGCACCTCTGATGGAACTCTACTGCCAACAAACTCGGGCCGTTTTAA
GAGCAACCGAGGATCTAATCAAACATATCACTTCTGTCTCTTCCAACCTC
CTCTCCTCTCCCACGCCTCGTCAATCTCCCCTCGGGGTCCAAACCGAGTT
GGCCCCGAAGACAGGGGTGGTGTGGGAGCAATGCGACAAGTTGGGCAAGT
TGCCCCGTTGCAACAAAGTGGCGTTTCGACGCGCTTTTTTCAACCATTAT
TCGGCGGTTAAAGACACATTGAGGGAATTCGAGGAATTGTTGCAGGAGGA
GGCAGAGGAAGAACGGACGGAGGGCGAGGAGGAGGAGGAGGAGGACGACG
ATCTGGTAGAGGGGGTGCAAGACATTGAACTTACAGGAGAGGAGGACGAG
GAGGGAGATTTCTTCGGAGGGGAAAGACGAATGAAAGAGTGGGAGAGAGA
GAATGTGAAGAGGTGTTTGGTTGCCTTGGGGCATTGCGGCGAGATGATCA
AGAGGGTTTTAGACACCGTGGACGAGGCGATGACGGAGGAGGGAGGGGAG
GGAGGGGAGGGAGGAAGGGAGGAAGGGCAGGAGGAGGGGGAGAGGATACA
GAAGGTCGCGGAGGTGGAGGAGAGTTGTCAAGGCTTGGCGGCGGCAGTCG
TGAATGCGGCGGATGCATTGTACCCGCCTCAAATACGGCAAGAGCTCGAA
TTGCAACTAGGCGCACTGGTGGCCGCAGCAGCGCACACAGCAGCAGCAGT
GGGCCGGTTCCCTGCGGGCTCGGCTTCTAGAAACTGCCAAGAGGAGATGG
AGAAAGTGCGGAGGGCCGCAGCGCGTGGTGTGGCGGAGGGAACGGAAGGC
GAGGAGGAGGATGAGGAGAAAGGGGAGGATGAAGAGGCTGGTGGAGAGGT
CTCATCTTGA

Synonyms

Publications