jgi.p|Nanoce1779_2|629623, mRNA_3917 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629623
Unique NamemRNA_3917
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1435
Alignment locationscaffold_8:399376..401308 -

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Properties
Property NameValue
TranscriptId629709
TrackFilteredModels2
ProteinId629623
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:399376..401308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629623gene_3917Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629623mRNA_3917-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3917CDS_3917Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3917 ID=mRNA_3917|Name=jgi.p|Nanoce1779_2|629623|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
GTGGTGGATGTGGTGGTGTTGTTGGGCGTTCAAAAGAACTGGGGTGAGAG
ATGGTAGTGGTCAAGCTCAGGGGGGGTGGCGAAGGGCCGGAACGCTTATC
GCCCTCTGTGTGGGCTTTGCCTTTGCAATTGAAGTGCGTCGTCCCAACTT
TGATCTTCTCACCGCTTGCGCGACAGCCAAATCCACACTCTAATATTCGG
CCGCTCCATGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTA
GCGGATTCCTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTAT
CATCTACAACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAG
CAGCAGCAGCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCAC
GACCTGTGTCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGC
GCGAGCAGCGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACC
CCAACAGGAAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGG
AAGAAATTGGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCT
GGCAGTGCAGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGA
TAAGCTCCGCACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACT
ATAAAATCTTCCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCG
CCTCTCTCTCGCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAAT
TGGTCCTCGCCCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGG
GACTTTTCATTCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCC
GGTTTCCTGATGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGA
CGGGGATGGTTCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCAT
ACGCTGCTGCTGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGG
GTGATGCTTCAGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATAC
GTTCTATGAGAGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGC
AGCTGCTGCAGGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGG
GTCAGTCACGCGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTT
GGTGACGAGTCATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTC
ATGTGGTGGCGGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCC
AGCCCTGTCCGGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGT
GTTTATTGTTAGGTCTTCACTGACCTTCTTGGTGG
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protein sequence of jgi.p|Nanoce1779_2|629623

>mRNA_3917-protein ID=mRNA_3917-protein|Name=jgi.p|Nanoce1779_2|629623|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MSVIGACSGVGPCFSGFLLVLLISNEQLIPYHLQQNSDMADDDHGGASSS
SDTTTPMRRLYRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQ
EGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKL
RTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGP
RPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGD
GSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFY
ERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVT
SHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFI
VRSSLTFLV
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mRNA from alignment at scaffold_8:399376..401308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3917 ID=mRNA_3917|Name=jgi.p|Nanoce1779_2|629623|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at scaffold_8:399376..401308- (Nannochloropsis oceanica)
GTGGTGGATGTGGTGGTGTTGTTGGGCGTTCAAAAGAACTGGGGTGAGAG
ATGGTAGTGGTCAAGCTCAGGGGGGGTGGCGAAGGGCCGGAACGCTTATC
GCCCTCTGTGTGGGCTTTGCCTTTGCAATTGAAGTGCGTCGTCCCAACTT
TGATCTTCTCACCGCTTGCGCGACAGCCAAATCCACACTCTAATATTCGG
CCGCTCCATGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTA
GCGGATTCCTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTAT
CATCTACAACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAG
CAGCAGCAGCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCAC
GACCTGTGTCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGC
GCGAGCAGCGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACC
CCAACAGGAAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGG
AAGAAATTGGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCT
GGCAGTGCAGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGA
TAAGGTGAGTTTGGGAGAAAGGTTTGATGGAAGGAGGTGAAAGTGGAGGC
AGTGAGAGGAGAGGACTCGTTAAGGGTGCCATATCAATGCGATTTGAGAC
TGACACTCGTAGGATGCATCTTAACATATGCGTGCGTGTGTACAAGCGTG
TGTGGGTAGTGCCTTGGGCGCGAGCACCCGGCCGTTCCCTTTTTCGTCCC
TCCCTCTCCTGTAGCGAGCAGCGAATCTATCGGCCTTGATTGCCCGAATC
GGACCTTCCACGTATTGAATCTTTTTGATTCTGCTCCCGTGTTGTCTTTT
CGTGCTTGTGAGAGATGAAGAATCGGGTCCTTTTCCTTCCTTTCTTCTAG
AACCTCTCTCCCATCATGTATGCATTCACACCTTCATTTCCCCGTCCATC
CCCGCGCTAGATCTACACGCCCTTGCTCCCTATCAACAAGCTACTTTCAT
CATATTACACTCACTGCCCCTTCCTTTCTACTTCCCTTATTCCCTCCTAC
AGCTCCGCACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTAT
AAAATCTTCCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCC
TCTCTCTCGCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTG
GTCCTCGCCCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGA
CTTTTCATTCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGG
TTTCCTGATGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACG
GGGATGGTTCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATAC
GCTGCTGCTGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGT
GATGCTTCAGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGT
TCTATGAGAGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAG
CTGCTGCAGGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGT
CAGTCACGCGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGG
TGACGAGTCATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCAT
GTGGTGGCGGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAG
CCCTGTCCGGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGT
TTATTGTTAGGTCTTCACTGACCTTCTTGGTGG
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Coding sequence (CDS) from alignment at scaffold_8:399376..401308-

>mRNA_3917 ID=mRNA_3917|Name=jgi.p|Nanoce1779_2|629623|organism=Nannochloropsis oceanica|type=CDS|length=2454bp|location=Sequence derived from alignment at scaffold_8:399376..401308- (Nannochloropsis oceanica)
CTCCGCACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTATAA
AATCTTCCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCCTC
TCTCTCGCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTGGT
CCTCGCCCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGACT
TTTCATTCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGGTT
TCCTGATGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACGGG
GATGGTTCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATACGC
TGCTGCTGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGTGA
TGCTTCAGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGTTC
TATGAGAGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAGCT
GCTGCAGGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGTCA
GTCACGCGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGGTG
ACGAGTCATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCATGT
GGTGGCGGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAGCC
CTGTCCGGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGTTT
ATTGTTAGGTCTTCACTGACCTTCTTGGTGATGTCTGTAATTGGCGCGTG
TTCGGGGGTTGGCCCGTGTTTTAGCGGATTCCTGCTAGTGCTTCTGATTT
CTAACGAACAGCTCATCCCCTATCATCTACAACAGAACAGTGACATGGCG
GACGACGATCACGGGGGCGCCAGCAGCAGCAGCGACACCACCACGCCCAT
GCGACGCTTGTATCGACGGCCACGACCTGTGTCTACACTGGAGGCGTCGG
ATGGAGAGTTGCTCTACGGGAGCGCGAGCAGCGGACATGGCCTGGCTGGG
CATCGACAGAGAGGGGGGCGACCCCAACAGGAAGGCCAGGCAGGGGAGGA
CTACGACGAGGAGGAGAGGGAGGAAGAAATTGGAGATGTTGAATGGCTGC
TGGGGACCGCGCGAGGCGCGCCTGGCAGTGCAGAGATTGATTATACGAGC
TTCCATCGACTAGGCTTTCGGGATAAGCTCCGCACCCTCATCTGGGTTCA
TAAAGCTCGTCTTTTGGGTCACTATAAAATCTTCCACCATTACATCGAAC
GCTGCCCCTGCCGTCCCTGCTCGCCTCTCTCTCGCTCCTACGCCCGCTCT
TACTCTCGTGCGTTAACGGGAATTGGTCCTCGCCCCTGTTTGCGTGCGCC
TTTCTCTCTGCTTGGCTTGCAGGGACTTTTCATTCGCACCCCACCCTCCG
CCGATGCATGGCGCTCGGCCGCCGGTTTCCTGATGGAAGGAGGGATGAGC
ACAAGGGAGGAAAGGGGGGAGGACGGGGATGGTTCCAATGCTTACTTGGT
GGAGATCTTTCGGTTGCAGCCATACGCTGCTGCTGCCTATCTAAGGGCTC
TGTTGTATTGCTGGATCGGAGGGGTGATGCTTCAGCTAGAGGCAGCGGCA
AGTTTCGGCGCGGGGGGGGATACGTTCTATGAGAGAACAGCGTGGCATTG
GCTGTGTCTGCAGTTGGTGCTGCAGCTGCTGCAGGCCCCTGCGAGGTGCA
AGTTGTGGAGACGGCTCGTCCGGGTCAGTCACGCGGCGGAGGCGGAGGAG
GCAAGTGAGCGGATCCGATGGTTGGTGACGAGTCATTTGTGGATTTGCAG
TCAAGCGCTTGGGACGTTGTTTCATGTGGTGGCGGCATTTGGGCCCTTGT
TTTTGTATTTTTTGGACAGCTCCAGCCCTGTCCGGCGGAGTGTGTTGGCT
GCGTGTTGTGGAAATTTACTTGTGTTTATTGTTAGGTCTTCACTGACCTT
CTTGGTGATGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTA
GCGGATTCCTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTAT
CATCTACAACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAG
CAGCAGCAGCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCAC
GACCTGTGTCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGC
GCGAGCAGCGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACC
CCAACAGGAAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGG
AAGAAATTGGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCT
GGCAGTGCAGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGA
TAAG
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Synonyms
Publications