jgi.p|Nanoce1779_2|585827, mRNA_3916 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585827
Unique NamemRNA_3916
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length732
Alignment locationscaffold_8:398643..399374 -

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Properties
Property NameValue
TranscriptId585913
TrackFilteredModels2
ProteinId585827
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:398643..399374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585827gene_3916Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585827mRNA_3916-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3916CDS_3916Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3916 ID=mRNA_3916|Name=jgi.p|Nanoce1779_2|585827|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
CCATTCCATCATGGAGGCGAGGGGAGAGGGCGGGAGGGAGGGAAGGATCA
AGAGGCTGAAGAGGGGGTTGTCAAGGAATAGCTTGTCCAAGTTGAAGAGG
AGGGAGAGCAACGCAGAGGATGTGGTGAATGCGAACCAGTGCGCGATTTG
CTTGGGGTCTTTTCAGCAGGGAGAGAATCTGCTATTGCTGCCCTGTCATG
AACGACATGTCTATCATTGTGAGTGTATTGAGACGTGGTTCAAAAAGAAC
AGATCTTGTCCTCTGTGCATGACCGATGTTTCTTCTCCTGCAGTGGCTGC
AGCGCTGGCAGCAGCAGCAGCAGCGACAAAGGAGAAGGAAGAAAAGGAGG
GAAGGAGGGAAGACATGCATAGGGAAATGCGGCAGGTGCTGCAGCAGCAT
GATATATGCAATTAGCAAGGGAGTGAGAAACAGAAAAACCGATAGATCTA
CGGCAACAGGAAGAACGACTCAATGAGTGAAGACGAACGACCACACTTAA
GAGTGGAAGACGAGAGAGGAAGTTGATTTAAATTTTGGTGAGGGGAAGGC
AGCCGCAGTTGCAATAGTAGAAGCAATCCTTAACCATGCTTGTAAATGTT
TGGAAGAGAAGGAGAGAATCCGCAAGTCGAAGCTTATAGAAGATATTTTT
TAAAGCTTAAAATGGACGAGATCCTTGGGACATCGACGGAAATAGATCTT
TGGAAGAAAAATCATATCGACGTGCGTTAAAA
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protein sequence of jgi.p|Nanoce1779_2|585827

>mRNA_3916-protein ID=mRNA_3916-protein|Name=jgi.p|Nanoce1779_2|585827|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGS
FQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPAVAAALA
AAAAATKEKEEKEGRREDMHREMRQVLQQHDICN*
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mRNA from alignment at scaffold_8:398643..399374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3916 ID=mRNA_3916|Name=jgi.p|Nanoce1779_2|585827|organism=Nannochloropsis oceanica|type=mRNA|length=732bp|location=Sequence derived from alignment at scaffold_8:398643..399374- (Nannochloropsis oceanica)
CCATTCCATCATGGAGGCGAGGGGAGAGGGCGGGAGGGAGGGAAGGATCA
AGAGGCTGAAGAGGGGGTTGTCAAGGAATAGCTTGTCCAAGTTGAAGAGG
AGGGAGAGCAACGCAGAGGATGTGGTGAATGCGAACCAGTGCGCGATTTG
CTTGGGGTCTTTTCAGCAGGGAGAGAATCTGCTATTGCTGCCCTGTCATG
AACGACATGTCTATCATTGTGAGTGTATTGAGACGTGGTTCAAAAAGAAC
AGATCTTGTCCTCTGTGCATGACCGATGTTTCTTCTCCTGCAGTGGCTGC
AGCGCTGGCAGCAGCAGCAGCAGCGACAAAGGAGAAGGAAGAAAAGGAGG
GAAGGAGGGAAGACATGCATAGGGAAATGCGGCAGGTGCTGCAGCAGCAT
GATATATGCAATTAGCAAGGGAGTGAGAAACAGAAAAACCGATAGATCTA
CGGCAACAGGAAGAACGACTCAATGAGTGAAGACGAACGACCACACTTAA
GAGTGGAAGACGAGAGAGGAAGTTGATTTAAATTTTGGTGAGGGGAAGGC
AGCCGCAGTTGCAATAGTAGAAGCAATCCTTAACCATGCTTGTAAATGTT
TGGAAGAGAAGGAGAGAATCCGCAAGTCGAAGCTTATAGAAGATATTTTT
TAAAGCTTAAAATGGACGAGATCCTTGGGACATCGACGGAAATAGATCTT
TGGAAGAAAAATCATATCGACGTGCGTTAAAA
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Coding sequence (CDS) from alignment at scaffold_8:398643..399374-

>mRNA_3916 ID=mRNA_3916|Name=jgi.p|Nanoce1779_2|585827|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_8:398643..399374- (Nannochloropsis oceanica)
ATGGAGGCGAGGGGAGAGGGCGGGAGGGAGGGAAGGATCAAGAGGCTGAA
GAGGGGGTTGTCAAGGAATAGCTTGTCCAAGTTGAAGAGGAGGGAGAGCA
ACGCAGAGGATGTGGTGAATGCGAACCAGTGCGCGATTTGCTTGGGGTCT
TTTCAGCAGGGAGAGAATCTGCTATTGCTGCCCTGTCATGAACGACATGT
CTATCATTGTGAGTGTATTGAGACGTGGTTCAAAAAGAACAGATCTTGTC
CTCTGTGCATGACCGATGTTTCTTCTCCTGCAGTGGCTGCAGCGCTGGCA
GCAGCAGCAGCAGCGACAAAGGAGAAGGAAGAAAAGGAGGGAAGGAGGGA
AGACATGCATAGGGAAATGCGGCAGGTGCTGCAGCAGCATGATATATGCA
ATTAG
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Synonyms
Publications