jgi.p|Nanoce1779_2|585821, mRNA_3914 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585821
Unique Name	mRNA_3914
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2690
Alignment location	scaffold_8:387274..389963 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585907
Track	FilteredModels2
ProteinId	585821

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:387274..389963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585821	gene_3914	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585821	mRNA_3914-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3914	CDS_3914	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:387274..389963+
coding sequence from alignment at scaffold_8:387274..389963+

mRNA sequence

>mRNA_3914 ID=mRNA_3914|Name=jgi.p|Nanoce1779_2|585821|organism=Nannochloropsis oceanica|type=mRNA|length=2690bp
GGCAGGTGGAGGAGGGGGAGTGGTCACGACAGGCAGAGATGAAGCAGAGG
ACAACGAGGGCGGCTTTACACGGAGCGTATCAAAGGATGAGGGAGTGTTT
GAGGGCTTTAGAAGCAGAGAGGAGCAGGTTGAGGATTAGCTTGATTCGGG
ACGCGAAAATTGTGCTTTGTACATTGTCGACAGCTGCTTCTCCTTACCTT
TCTGAAGCCGTCACGAGCACCTCACGGGGGTTTGGTACCGTTGTCATCGA
CGAGGCGGGACAAGCTGTGGAGCCATCTACGCTCATCCCCTTGAGGTATG
GCTGCCGGAATTTGATTTTAGTTGGGGATCCGCGTCAGCTCCCTGCAACT
GTCATGAGTCCCGTAGTCCAGCGATTCAAGTATGAGAGAAGTTTGTTTGA
ACGGCTGGAAAAGGGCGGGCATCCGGTGCACTTGCTGAGGGTACAATATC
GGATGCGGCCTGCCATTTGTCGTTTTCCCTCCCAGGCGTTCTATGAGAAT
AAATTATTAAATGCTCCAAGCTTGGTGGCGGCGGAGGAGGAGGGGGGAGA
GCTGAGTACATATGATAAAGTGCCTTATTTTGGGGCATATAAAGTTTTTG
ATGTCTCGCGGGGGAGAGAGACAAGGAGGGGAAATGGGATCAGTAATGAA
GGGGAGGCGGCGTTTGCAGTGCAATTGTTTGGACGATTTAAGCTTGAGTT
TCCTCATCTGGTGGGACAGGACCAGGTTGCGGTTATCACGCCTTATCGGG
CTCAGGTCAGGTTGTTGGAACAAAAATTTATGAGGGAATATGGGATGGAT
TGGGGACGGATGGTGGAGATCAGCACGGTGGATAAGTTTCAGGGGAGGGA
GAAGGAAGTGATATTATTTTCATGCGTGAGGGCGAATGTGCAAGGGTCAA
GGGGCGGTGGAGGACGAGGGGGAATAGGGTTTTTGGCGGATCAGAGACGG
ATGAATGTGGGATTGACAAGGGCGAGACGATCGTTGTTTGTGTTGGGACA
TCGAGCGAGTCTTTCCACAGATAGAATGTGGAATGCCTTAATTGATGATG
CGGATGAGAGGGAGTGTTTGGTGGATTCCCGTGGGATGAGTTTCGATCAG
CTAGCACTTGAGATGCTTCGAGGGCGGGAAGAAAAGGGAAGAGAATTGCC
GCAGGGCCCGCGGCCGTTGAATAAAAAGGCGGTCGCATGGAGGGAAAAAG
AGGAGGTTGAGGTGTTTGGGTCAGCAGTGATAAGGGGGGGAGAGAAAAGG
GATGTGCCACCTCGTCCATCGCCTCTCAGTGGTCCTTGTTCCCGCCAACC
TCCTTTCAAGGATATTTCTCCTGGTGGCCTTTTGAAGGGCCTGCTAACCC
GATGTGACGCTGCCAAGCCTGTGGCGATGCCAACAGCAGTAGCAGGAGCA
GCGAAAGGAGTAGCACAAGCGCCCGCACCAGCAACCGTAGGTGGTGTTGG
AGAAGGGGGAGAGAGTGGGGGTGGTTGGAATAAGGGAAACGGACGAAGGC
ACCGTGAGCAGCGACGACAGCAGGAGCAGGTAGAGGAAGAGAAGGAGGGA
CAGCAACGACGACAGCAGGAGCAGGTAGAGGAAGAGAAGGAGGGACAGCA
ACGACGACAGCAACGACTACAAGGACAGCAAAAACATCAACATCAACGAA
ATCAGCAAGAGCGGCAGACGAAACAGCAGCAACCGCAGTATCAAATATCC
GCCCAAGACCTCGCGGCCATCGAGGAGCAGTTACGTCAGCAGCAAGAGCG
GTCAACATTACGAGCAAAGCAACGAGGTCCTGCTACAGCACCCGACCGAC
CTCAGCCCCCGTTTTTTGCGACCTCTGCTGCTCGAATGGATTATTCAATG
TCATGGGCTGTACCAAGCAGTGTCTCTCCACCCGAAGGCAGAGGGGGCGG
CAAAGGTGGAAATGGACGAGGTGAAGACAGACGAAGTTCAAGTACTGCAA
CATTGCATTACTGTGACAGCAACATTAGTGGCTACAGCAGTGGTAGTGAT
GGAAATGCCTGTAGAGGAAGAGGAGGAGGAGGACAAACAGGAGGGCGAGG
AGGAGGAGGTTCCAAGGCGTTACCTAAGCGCGCGGCCCCGGGTATGAATA
ATTTTGGCTCTCAGAAGCGGCCGCAACCCATTGAACAGGTTACGCGTTTG
GGCCAGAGCAAAAAGGCCAAGGGCACTGTTACTGCTGCGTCTGGTACTGC
CCTTACGACCTTGTCCTCTCTCGCGTCCTGGCCCTCGCCTTCGTCCCCTC
GTAGCACTGGCAGCCACAGCCGCGGGGAGCACAGCCTAGCAGTAGACCTA
CGAGCCACGACTTCGCCCCTTCCAACTTCTATCAATTCAAGCTCGACTAT
TCCTCGAAAGTTTGAAAGAAGTAACCCTTCTTATTCTGCGCGAGCAGCTG
CTTTGTCATCCTACGTTGCGGGCGAGGCAGCACCAACAGAAACAAAAAAT
TCAACAAGAGCGGTGAGCGCATTTACAACAGTAAGGCCACAACCAGCAAT
AGCAGCAACAGCAGCAGCACGACCGTCAAAGCCGCGATTGCAAGAGAATC
GGCCGAGTGTTTCCCTTACTTCTCTTATGAATAACATGCCGGGTGTTGGT
TAGAGGGAGGGGCAATATACATCACAGCCAGATGTGCAGAAATTTTGTGG
GTGGTAATGTACAGAAGATATTAACAGATTTTGAAACAGA

protein sequence of jgi.p|Nanoce1779_2|585821

>mRNA_3914-protein ID=mRNA_3914-protein|Name=jgi.p|Nanoce1779_2|585821|organism=Nannochloropsis oceanica|type=polypeptide|length=855bp
MKQRTTRAALHGAYQRMRECLRALEAERSRLRISLIRDAKIVLCTLSTAA
SPYLSEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPRQ
LPATVMSPVVQRFKYERSLFERLEKGGHPVHLLRVQYRMRPAICRFPSQA
FYENKLLNAPSLVAAEEEGGELSTYDKVPYFGAYKVFDVSRGRETRRGNG
ISNEGEAAFAVQLFGRFKLEFPHLVGQDQVAVITPYRAQVRLLEQKFMRE
YGMDWGRMVEISTVDKFQGREKEVILFSCVRANVQGSRGGGGRGGIGFLA
DQRRMNVGLTRARRSLFVLGHRASLSTDRMWNALIDDADERECLVDSRGM
SFDQLALEMLRGREEKGRELPQGPRPLNKKAVAWREKEEVEVFGSAVIRG
GEKRDVPPRPSPLSGPCSRQPPFKDISPGGLLKGLLTRCDAAKPVAMPTA
VAGAAKGVAQAPAPATVGGVGEGGESGGGWNKGNGRRHREQRRQQEQVEE
EKEGQQRRQQEQVEEEKEGQQRRQQRLQGQQKHQHQRNQQERQTKQQQPQ
YQISAQDLAAIEEQLRQQQERSTLRAKQRGPATAPDRPQPPFFATSAARM
DYSMSWAVPSSVSPPEGRGGGKGGNGRGEDRRSSSTATLHYCDSNISGYS
SGSDGNACRGRGGGGQTGGRGGGGSKALPKRAAPGMNNFGSQKRPQPIEQ
VTRLGQSKKAKGTVTAASGTALTTLSSLASWPSPSSPRSTGSHSRGEHSL
AVDLRATTSPLPTSINSSSTIPRKFERSNPSYSARAAALSSYVAGEAAPT
ETKNSTRAVSAFTTVRPQPAIAATAAARPSKPRLQENRPSVSLTSLMNNM
PGVG*

mRNA from alignment at scaffold_8:387274..389963+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3914 ID=mRNA_3914|Name=jgi.p|Nanoce1779_2|585821|organism=Nannochloropsis oceanica|type=mRNA|length=2690bp|location=Sequence derived from alignment at scaffold_8:387274..389963+ (Nannochloropsis oceanica)
GGCAGGTGGAGGAGGGGGAGTGGTCACGACAGGCAGAGATGAAGCAGAGG
ACAACGAGGGCGGCTTTACACGGAGCGTATCAAAGGATGAGGGAGTGTTT
GAGGGCTTTAGAAGCAGAGAGGAGCAGGTTGAGGATTAGCTTGATTCGGG
ACGCGAAAATTGTGCTTTGTACATTGTCGACAGCTGCTTCTCCTTACCTT
TCTGAAGCCGTCACGAGCACCTCACGGGGGTTTGGTACCGTTGTCATCGA
CGAGGCGGGACAAGCTGTGGAGCCATCTACGCTCATCCCCTTGAGGTATG
GCTGCCGGAATTTGATTTTAGTTGGGGATCCGCGTCAGCTCCCTGCAACT
GTCATGAGTCCCGTAGTCCAGCGATTCAAGTATGAGAGAAGTTTGTTTGA
ACGGCTGGAAAAGGGCGGGCATCCGGTGCACTTGCTGAGGGTACAATATC
GGATGCGGCCTGCCATTTGTCGTTTTCCCTCCCAGGCGTTCTATGAGAAT
AAATTATTAAATGCTCCAAGCTTGGTGGCGGCGGAGGAGGAGGGGGGAGA
GCTGAGTACATATGATAAAGTGCCTTATTTTGGGGCATATAAAGTTTTTG
ATGTCTCGCGGGGGAGAGAGACAAGGAGGGGAAATGGGATCAGTAATGAA
GGGGAGGCGGCGTTTGCAGTGCAATTGTTTGGACGATTTAAGCTTGAGTT
TCCTCATCTGGTGGGACAGGACCAGGTTGCGGTTATCACGCCTTATCGGG
CTCAGGTCAGGTTGTTGGAACAAAAATTTATGAGGGAATATGGGATGGAT
TGGGGACGGATGGTGGAGATCAGCACGGTGGATAAGTTTCAGGGGAGGGA
GAAGGAAGTGATATTATTTTCATGCGTGAGGGCGAATGTGCAAGGGTCAA
GGGGCGGTGGAGGACGAGGGGGAATAGGGTTTTTGGCGGATCAGAGACGG
ATGAATGTGGGATTGACAAGGGCGAGACGATCGTTGTTTGTGTTGGGACA
TCGAGCGAGTCTTTCCACAGATAGAATGTGGAATGCCTTAATTGATGATG
CGGATGAGAGGGAGTGTTTGGTGGATTCCCGTGGGATGAGTTTCGATCAG
CTAGCACTTGAGATGCTTCGAGGGCGGGAAGAAAAGGGAAGAGAATTGCC
GCAGGGCCCGCGGCCGTTGAATAAAAAGGCGGTCGCATGGAGGGAAAAAG
AGGAGGTTGAGGTGTTTGGGTCAGCAGTGATAAGGGGGGGAGAGAAAAGG
GATGTGCCACCTCGTCCATCGCCTCTCAGTGGTCCTTGTTCCCGCCAACC
TCCTTTCAAGGATATTTCTCCTGGTGGCCTTTTGAAGGGCCTGCTAACCC
GATGTGACGCTGCCAAGCCTGTGGCGATGCCAACAGCAGTAGCAGGAGCA
GCGAAAGGAGTAGCACAAGCGCCCGCACCAGCAACCGTAGGTGGTGTTGG
AGAAGGGGGAGAGAGTGGGGGTGGTTGGAATAAGGGAAACGGACGAAGGC
ACCGTGAGCAGCGACGACAGCAGGAGCAGGTAGAGGAAGAGAAGGAGGGA
CAGCAACGACGACAGCAGGAGCAGGTAGAGGAAGAGAAGGAGGGACAGCA
ACGACGACAGCAACGACTACAAGGACAGCAAAAACATCAACATCAACGAA
ATCAGCAAGAGCGGCAGACGAAACAGCAGCAACCGCAGTATCAAATATCC
GCCCAAGACCTCGCGGCCATCGAGGAGCAGTTACGTCAGCAGCAAGAGCG
GTCAACATTACGAGCAAAGCAACGAGGTCCTGCTACAGCACCCGACCGAC
CTCAGCCCCCGTTTTTTGCGACCTCTGCTGCTCGAATGGATTATTCAATG
TCATGGGCTGTACCAAGCAGTGTCTCTCCACCCGAAGGCAGAGGGGGCGG
CAAAGGTGGAAATGGACGAGGTGAAGACAGACGAAGTTCAAGTACTGCAA
CATTGCATTACTGTGACAGCAACATTAGTGGCTACAGCAGTGGTAGTGAT
GGAAATGCCTGTAGAGGAAGAGGAGGAGGAGGACAAACAGGAGGGCGAGG
AGGAGGAGGTTCCAAGGCGTTACCTAAGCGCGCGGCCCCGGGTATGAATA
ATTTTGGCTCTCAGAAGCGGCCGCAACCCATTGAACAGGTTACGCGTTTG
GGCCAGAGCAAAAAGGCCAAGGGCACTGTTACTGCTGCGTCTGGTACTGC
CCTTACGACCTTGTCCTCTCTCGCGTCCTGGCCCTCGCCTTCGTCCCCTC
GTAGCACTGGCAGCCACAGCCGCGGGGAGCACAGCCTAGCAGTAGACCTA
CGAGCCACGACTTCGCCCCTTCCAACTTCTATCAATTCAAGCTCGACTAT
TCCTCGAAAGTTTGAAAGAAGTAACCCTTCTTATTCTGCGCGAGCAGCTG
CTTTGTCATCCTACGTTGCGGGCGAGGCAGCACCAACAGAAACAAAAAAT
TCAACAAGAGCGGTGAGCGCATTTACAACAGTAAGGCCACAACCAGCAAT
AGCAGCAACAGCAGCAGCACGACCGTCAAAGCCGCGATTGCAAGAGAATC
GGCCGAGTGTTTCCCTTACTTCTCTTATGAATAACATGCCGGGTGTTGGT
TAGAGGGAGGGGCAATATACATCACAGCCAGATGTGCAGAAATTTTGTGG
GTGGTAATGTACAGAAGATATTAACAGATTTTGAAACAGA

Coding sequence (CDS) from alignment at scaffold_8:387274..389963+

>mRNA_3914 ID=mRNA_3914|Name=jgi.p|Nanoce1779_2|585821|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_8:387274..389963+ (Nannochloropsis oceanica)
ATGAAGCAGAGGACAACGAGGGCGGCTTTACACGGAGCGTATCAAAGGAT
GAGGGAGTGTTTGAGGGCTTTAGAAGCAGAGAGGAGCAGGTTGAGGATTA
GCTTGATTCGGGACGCGAAAATTGTGCTTTGTACATTGTCGACAGCTGCT
TCTCCTTACCTTTCTGAAGCCGTCACGAGCACCTCACGGGGGTTTGGTAC
CGTTGTCATCGACGAGGCGGGACAAGCTGTGGAGCCATCTACGCTCATCC
CCTTGAGGTATGGCTGCCGGAATTTGATTTTAGTTGGGGATCCGCGTCAG
CTCCCTGCAACTGTCATGAGTCCCGTAGTCCAGCGATTCAAGTATGAGAG
AAGTTTGTTTGAACGGCTGGAAAAGGGCGGGCATCCGGTGCACTTGCTGA
GGGTACAATATCGGATGCGGCCTGCCATTTGTCGTTTTCCCTCCCAGGCG
TTCTATGAGAATAAATTATTAAATGCTCCAAGCTTGGTGGCGGCGGAGGA
GGAGGGGGGAGAGCTGAGTACATATGATAAAGTGCCTTATTTTGGGGCAT
ATAAAGTTTTTGATGTCTCGCGGGGGAGAGAGACAAGGAGGGGAAATGGG
ATCAGTAATGAAGGGGAGGCGGCGTTTGCAGTGCAATTGTTTGGACGATT
TAAGCTTGAGTTTCCTCATCTGGTGGGACAGGACCAGGTTGCGGTTATCA
CGCCTTATCGGGCTCAGGTCAGGTTGTTGGAACAAAAATTTATGAGGGAA
TATGGGATGGATTGGGGACGGATGGTGGAGATCAGCACGGTGGATAAGTT
TCAGGGGAGGGAGAAGGAAGTGATATTATTTTCATGCGTGAGGGCGAATG
TGCAAGGGTCAAGGGGCGGTGGAGGACGAGGGGGAATAGGGTTTTTGGCG
GATCAGAGACGGATGAATGTGGGATTGACAAGGGCGAGACGATCGTTGTT
TGTGTTGGGACATCGAGCGAGTCTTTCCACAGATAGAATGTGGAATGCCT
TAATTGATGATGCGGATGAGAGGGAGTGTTTGGTGGATTCCCGTGGGATG
AGTTTCGATCAGCTAGCACTTGAGATGCTTCGAGGGCGGGAAGAAAAGGG
AAGAGAATTGCCGCAGGGCCCGCGGCCGTTGAATAAAAAGGCGGTCGCAT
GGAGGGAAAAAGAGGAGGTTGAGGTGTTTGGGTCAGCAGTGATAAGGGGG
GGAGAGAAAAGGGATGTGCCACCTCGTCCATCGCCTCTCAGTGGTCCTTG
TTCCCGCCAACCTCCTTTCAAGGATATTTCTCCTGGTGGCCTTTTGAAGG
GCCTGCTAACCCGATGTGACGCTGCCAAGCCTGTGGCGATGCCAACAGCA
GTAGCAGGAGCAGCGAAAGGAGTAGCACAAGCGCCCGCACCAGCAACCGT
AGGTGGTGTTGGAGAAGGGGGAGAGAGTGGGGGTGGTTGGAATAAGGGAA
ACGGACGAAGGCACCGTGAGCAGCGACGACAGCAGGAGCAGGTAGAGGAA
GAGAAGGAGGGACAGCAACGACGACAGCAGGAGCAGGTAGAGGAAGAGAA
GGAGGGACAGCAACGACGACAGCAACGACTACAAGGACAGCAAAAACATC
AACATCAACGAAATCAGCAAGAGCGGCAGACGAAACAGCAGCAACCGCAG
TATCAAATATCCGCCCAAGACCTCGCGGCCATCGAGGAGCAGTTACGTCA
GCAGCAAGAGCGGTCAACATTACGAGCAAAGCAACGAGGTCCTGCTACAG
CACCCGACCGACCTCAGCCCCCGTTTTTTGCGACCTCTGCTGCTCGAATG
GATTATTCAATGTCATGGGCTGTACCAAGCAGTGTCTCTCCACCCGAAGG
CAGAGGGGGCGGCAAAGGTGGAAATGGACGAGGTGAAGACAGACGAAGTT
CAAGTACTGCAACATTGCATTACTGTGACAGCAACATTAGTGGCTACAGC
AGTGGTAGTGATGGAAATGCCTGTAGAGGAAGAGGAGGAGGAGGACAAAC
AGGAGGGCGAGGAGGAGGAGGTTCCAAGGCGTTACCTAAGCGCGCGGCCC
CGGGTATGAATAATTTTGGCTCTCAGAAGCGGCCGCAACCCATTGAACAG
GTTACGCGTTTGGGCCAGAGCAAAAAGGCCAAGGGCACTGTTACTGCTGC
GTCTGGTACTGCCCTTACGACCTTGTCCTCTCTCGCGTCCTGGCCCTCGC
CTTCGTCCCCTCGTAGCACTGGCAGCCACAGCCGCGGGGAGCACAGCCTA
GCAGTAGACCTACGAGCCACGACTTCGCCCCTTCCAACTTCTATCAATTC
AAGCTCGACTATTCCTCGAAAGTTTGAAAGAAGTAACCCTTCTTATTCTG
CGCGAGCAGCTGCTTTGTCATCCTACGTTGCGGGCGAGGCAGCACCAACA
GAAACAAAAAATTCAACAAGAGCGGTGAGCGCATTTACAACAGTAAGGCC
ACAACCAGCAATAGCAGCAACAGCAGCAGCACGACCGTCAAAGCCGCGAT
TGCAAGAGAATCGGCCGAGTGTTTCCCTTACTTCTCTTATGAATAACATG
CCGGGTGTTGGTTAG

Synonyms

Publications