jgi.p|Nanoce1779_2|585813, mRNA_3911 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585813
Unique NamemRNA_3911
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length543
Alignment locationscaffold_8:379633..380406 -

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Properties
Property NameValue
TranscriptId585899
TrackFilteredModels2
ProteinId585813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:379633..380406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585813gene_3911Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585813mRNA_3911-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3911CDS_3911Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3911 ID=mRNA_3911|Name=jgi.p|Nanoce1779_2|585813|organism=Nannochloropsis oceanica|type=mRNA|length=543bp
ACAGGCACACGAGCATTTTGATTCAAGAAGAGAGTAAAGGAGCCAAGGGG
GTGCCAATCAGAGACAAATGGCAGCGCGCCTAGCAAACTTTAGAAACGTG
GTCCTAATGCTCAAGGACCTGCCGTCCGCCGTACACTTTTACGGTAAAAA
TGGACTGGGCCTAACTTTGAAGCGGCAGGGTGAGATGACTGCCGAATTCG
ACACAGGGGGACCGCCCCTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATG
CGGAGTACAGGCTATTCCCCCTTTTTATGCTTTGACGTGATGGACATGGA
TAGCACAGTGGTGCGATTACTCCAGTTGGGCGCGTCTTTGGACGGGCCGG
TCAAGTACCCGGCGTATGGCAAGGTGGGCGTGGTCCGTAGTCCCGACGGT
CATATGATTGGCCTCTTTGAGCCGGGCGACGCCGCCTCCAGCATGGATAG
TAGCGAGGAGGGAAGAACCCAACAACCGACAACACCACAATCACCACCGT
CTTCGCACGCCTAAAAAACAAACTCTACAGGAACAAAACAAAA
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protein sequence of jgi.p|Nanoce1779_2|585813

>mRNA_3911-protein ID=mRNA_3911-protein|Name=jgi.p|Nanoce1779_2|585813|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MAARLANFRNVVLMLKDLPSAVHFYGKNGLGLTLKRQGEMTAEFDTGGPP
LVLKAVEGEAMRSTGYSPFLCFDVMDMDSTVVRLLQLGASLDGPVKYPAY
GKVGVVRSPDGHMIGLFEPGDAASSMDSSEEGRTQQPTTPQSPPSSHA*
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mRNA from alignment at scaffold_8:379633..380406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3911 ID=mRNA_3911|Name=jgi.p|Nanoce1779_2|585813|organism=Nannochloropsis oceanica|type=mRNA|length=774bp|location=Sequence derived from alignment at scaffold_8:379633..380406- (Nannochloropsis oceanica)
ACAGGCACACGAGCATTTTGATTCAAGAAGAGAGTAAAGGAGCCAAGGGG
GTGCCAATCAGAGACAAATGGCAGCGCGCCTAGCAAACTTTAGGTACTTC
CACAAGTTCCCATGCTCGACCTCCCCACCCCCCAGCCCTTATTTCCTTCT
CATATTTCCTCTAGAAACGTGGTCCTAATGCTCAAGGACCTGCCGTCCGC
CGTACACTTTTACGGTAAAAATGGACTGGGCCTAACTTTGAAGCGGCAGG
GTGAGATGACTGCCGAATTCGACACAGGGGGACCGCCCCTTGTCCTGAAG
GCTGTAGAGGGGGAGGCGATGCGGAGTACAGGCTATTCCCCCTTTTTATG
CTTTGACGTGATGGACATGGATAGCACAGTGGTGCGATTACTCCAGTTGG
GCGCGTCTTTGGACGGGCCGGTCAAGTACCCGGCGTATGGCAAGGTAAGT
TTAGATACGGTGGCGGAAGGTGTGTGGTCACGTAGGATGCGAGTGGGATT
AGAAGAGATATCGCTGGGTGCTTTTCGGTAGTGTGGACCGAGTAAAGAGG
CATGGGTGCTGTTGCATCAACTGTTTGTTGTCCTTTCATGCATTTGCTTA
CTAGGTGGGCGTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTTTG
AGCCGGGCGACGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAACC
CAACAACCGACAACACCACAATCACCACCGTCTTCGCACGCCTAAAAAAC
AAACTCTACAGGAACAAAACAAAA
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Coding sequence (CDS) from alignment at scaffold_8:379633..380406-

>mRNA_3911 ID=mRNA_3911|Name=jgi.p|Nanoce1779_2|585813|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_8:379633..380406- (Nannochloropsis oceanica)
GTGGGCGTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTTTGAGCC
GGGCGACGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAACCCAAC
AACCGACAACACCACAATCACCACCGTCTTCGCACGCCTAAAAACGTGGT
CCTAATGCTCAAGGACCTGCCGTCCGCCGTACACTTTTACGGTAAAAATG
GACTGGGCCTAACTTTGAAGCGGCAGGGTGAGATGACTGCCGAATTCGAC
ACAGGGGGACCGCCCCTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATGCG
GAGTACAGGCTATTCCCCCTTTTTATGCTTTGACGTGATGGACATGGATA
GCACAGTGGTGCGATTACTCCAGTTGGGCGCGTCTTTGGACGGGCCGGTC
AAGTACCCGGCGTATGGCAAGATGGCAGCGCGCCTAGCAAACTTTAGGTG
GGCGTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTTTGAGCCGGG
CGACGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAACCCAACAAC
CGACAACACCACAATCACCACCGTCTTCGCACGCCTAAAAACGTGGTCCT
AATGCTCAAGGACCTGCCGTCCGCCGTACACTTTTACGGTAAAAATGGAC
TGGGCCTAACTTTGAAGCGGCAGGGTGAGATGACTGCCGAATTCGACACA
GGGGGACCGCCCCTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATGCGGAG
TACAGGCTATTCCCCCTTTTTATGCTTTGACGTGATGGACATGGATAGCA
CAGTGGTGCGATTACTCCAGTTGGGCGCGTCTTTGGACGGGCCGGTCAAG
TACCCGGCGTATGGCAAGATGGCAGCGCGCCTAGCAAACTTTAGGTGGGC
GTGGTCCGTAGTCCCGACGGTCATATGATTGGCCTCTTTGAGCCGGGCGA
CGCCGCCTCCAGCATGGATAGTAGCGAGGAGGGAAGAACCCAACAACCGA
CAACACCACAATCACCACCGTCTTCGCACGCCTAAAAACGTGGTCCTAAT
GCTCAAGGACCTGCCGTCCGCCGTACACTTTTACGGTAAAAATGGACTGG
GCCTAACTTTGAAGCGGCAGGGTGAGATGACTGCCGAATTCGACACAGGG
GGACCGCCCCTTGTCCTGAAGGCTGTAGAGGGGGAGGCGATGCGGAGTAC
AGGCTATTCCCCCTTTTTATGCTTTGACGTGATGGACATGGATAGCACAG
TGGTGCGATTACTCCAGTTGGGCGCGTCTTTGGACGGGCCGGTCAAGTAC
CCGGCGTATGGCAAGATGGCAGCGCGCCTAGCAAACTTTAG
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Synonyms
Publications