jgi.p|Nanoce1779_2|577193, mRNA_391 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577193
Unique Name	mRNA_391
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2135
Alignment location	scaffold_3:974776..976910 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577279
Track	FilteredModels2
ProteinId	577193

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:974776..976910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577193	gene_391	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577193	mRNA_391-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_391	CDS_391	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:974776..976910+
coding sequence from alignment at scaffold_3:974776..976910+

mRNA sequence

>mRNA_391 ID=mRNA_391|Name=jgi.p|Nanoce1779_2|577193|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp
AGGCAAATCAACACAAGAAACGAGACGTTTGGATCGCCGCAGTCACAAGC
AAAACGCCAAGGCAGTGTTCCCCTTACTTCGCCTCCTCCCACTTTTCACG
CACGGCCGAGCAGCAGCGAGTTTCCCATCGCATCAAGCCTCCACCCACGC
AATAAGCCATGCGACTCCACATTCAAGGGGCATTACTTGCCTGCTACTTT
ATAGCCGAGAGACAGGCCTTTATCTTCCCGTCTCTTCGGCCACAAAGCCC
CATCCAATGTAGCATAACCAACCCCCCTGCCCCCTCCTCCGCCAGCAACA
CCAATAGCAGAAGAATATTAGTCGCCCCAGCATGGATGACCCCCCAGTCC
TCCTCATCATCCTCTCCTCCCTCCTCCTCCATTCAAGAAAAGGGCAAAAA
GAGCCCGGCAGCTGCAGCAGCAGCAGCAGTAGAAGTAACAGCAGCAGCAG
CCGTGCCTGCCGCTGGGAAAGAGGACGCAGTTCCCACAGGGGACGTCGGG
GTAGCCAAAGCCCTCGCTAAACCTAGCGAATCTCGTGCAGCTGAATTACG
GCAAGCCAAAGAGCAAGAACGGATCAAGAACAAGAAGTTTATCAACCCGA
TAGAGATCCCTATTAAGGCAGGGCGGGCAGCGCGACGGGCGTTGGAAAGC
TTGGGTCAAGTCGAGGAGCCTGCTCCCAAGAACCCCGACGATTACCGCCT
GTATTTTGATAAAAAGTTCATGTATGCCATCCCGGCACCGAGTGAGAAAA
CTCCCACTGTGTTGGTGGTGGGAGCGACGGGGGAGACCGGGCGGCAGGTG
GTGAGGAAATTGATTCTGAAGGGGTATCGGGTGCAGGTTTTGGTGAGGAA
TTTGTACTCGACCACGCTCAATTTGTTGGGCACTGGCGTGTCGTACGTGA
AGGGGGACCTAGCGGACCTAGCTTCGTTGAGAACGGCGTGTGATGGGGCG
GATAAGGCGGTGTACGTGGCGCAGGCGAGGGATGATGGGGATGCTCGTAC
GGTGGAGTACTTGGGCCTGCGCAATCTGGCACAGGCGTTTCAGGACACCA
GATTGTCTGAGACAGGGAAGAGGGTCACGACAAAGAGGACATTGTTCAAG
TTCCGCAAGCCCGTTGACAGGGATGTCTGGGGCGTGACTCAGCCACTGGT
CGATGGAGCGGAAGGTGCGTGGACGGTCCAGGACGAGCGGTCGGGCCGGC
CTGCCTTTGTGGGGAGTTTGCCTGTGGGTCCCGGAGGATCCATTGCATTA
GAGAGTAAGAAATTAGGGCTGAATCTCTCAAAGTTTGGGGGTTTGTTGAT
GTTGTTCAAGGCCCAGGGGGATGCCCAGACCACTTTCCGGTTTGTGATAC
GCACGAGTGCATTTGCGGAACAGGGGATCCAATATGAGTTAGCCCTCCCG
CTGGTTCGAAATCGATTTACCGCTTTCAGGATGAATTTTAGAGACTTTGT
GCCGATGAAGGACGGGAGTCCTTACAAAGGTGTACTCGGCGGGTTGGGGG
GCGTGGCGGCGCTGGACCCGAGTGACGTAAAGCAATTCGCGGTGATGGTG
AAAAGAGAGCCGGCGGCGGCGGCGGGGGTGGACGAGGCGATTGCCAACCC
TGCCTTCAGTCTGACGATGGAGGGGATTAAGGTGTTCAGGGCGAGGGAAC
AGCCGGATGTAGTCGTGTTAAGTTCATCGGACATTACGCCATCGACGGCA
CTGAAGAGTTTGTCGGAAATGGAAAGGGACCCTGCATCGTTTGAGCGAGT
TGAAAGGAAAAATTACTATAAGGCCCAGGGAGAACTAGCGATGAAGAATA
CGGGGCTGGCGTATTGTATTGTAAGGATTTCGGACTTTACCTCCAGCCCG
ACGGAGGGAAGGCCGTTGAGCGTCTCGAAGAGTGGGAATAATATGGGCCT
TATCTCCAGGCCGGACACGGCTGATGTTTTGATCAATTGCTTGTTCAACC
CCACGGTTTGCAATACGGAGATTTATGCGAGTGAAAATCCGAGGTACGGA
GACCGAGATATCCAAAGGTTGTTGAATGAATTGGTGGATTTGCCGTTTTA
GATTGGAGAGGGGGGGGAAGGGAGGGAGGGAGAAAGGAAGGAAGGGAAGG
CAGGTGACAATTTATGATAGGGGAGAGTGAGTGAA

protein sequence of jgi.p|Nanoce1779_2|577193

>mRNA_391-protein ID=mRNA_391-protein|Name=jgi.p|Nanoce1779_2|577193|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MRLHIQGALLACYFIAERQAFIFPSLRPQSPIQCSITNPPAPSSASNTNS
RRILVAPAWMTPQSSSSSSPPSSSIQEKGKKSPAAAAAAAVEVTAAAAVP
AAGKEDAVPTGDVGVAKALAKPSESRAAELRQAKEQERIKNKKFINPIEI
PIKAGRAARRALESLGQVEEPAPKNPDDYRLYFDKKFMYAIPAPSEKTPT
VLVVGATGETGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGD
LADLASLRTACDGADKAVYVAQARDDGDARTVEYLGLRNLAQAFQDTRLS
ETGKRVTTKRTLFKFRKPVDRDVWGVTQPLVDGAEGAWTVQDERSGRPAF
VGSLPVGPGGSIALESKKLGLNLSKFGGLLMLFKAQGDAQTTFRFVIRTS
AFAEQGIQYELALPLVRNRFTAFRMNFRDFVPMKDGSPYKGVLGGLGGVA
ALDPSDVKQFAVMVKREPAAAAGVDEAIANPAFSLTMEGIKVFRAREQPD
VVVLSSSDITPSTALKSLSEMERDPASFERVERKNYYKAQGELAMKNTGL
AYCIVRISDFTSSPTEGRPLSVSKSGNNMGLISRPDTADVLINCLFNPTV
CNTEIYASENPRYGDRDIQRLLNELVDLPF*

mRNA from alignment at scaffold_3:974776..976910+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_391 ID=mRNA_391|Name=jgi.p|Nanoce1779_2|577193|organism=Nannochloropsis oceanica|type=mRNA|length=2135bp|location=Sequence derived from alignment at scaffold_3:974776..976910+ (Nannochloropsis oceanica)
AGGCAAATCAACACAAGAAACGAGACGTTTGGATCGCCGCAGTCACAAGC
AAAACGCCAAGGCAGTGTTCCCCTTACTTCGCCTCCTCCCACTTTTCACG
CACGGCCGAGCAGCAGCGAGTTTCCCATCGCATCAAGCCTCCACCCACGC
AATAAGCCATGCGACTCCACATTCAAGGGGCATTACTTGCCTGCTACTTT
ATAGCCGAGAGACAGGCCTTTATCTTCCCGTCTCTTCGGCCACAAAGCCC
CATCCAATGTAGCATAACCAACCCCCCTGCCCCCTCCTCCGCCAGCAACA
CCAATAGCAGAAGAATATTAGTCGCCCCAGCATGGATGACCCCCCAGTCC
TCCTCATCATCCTCTCCTCCCTCCTCCTCCATTCAAGAAAAGGGCAAAAA
GAGCCCGGCAGCTGCAGCAGCAGCAGCAGTAGAAGTAACAGCAGCAGCAG
CCGTGCCTGCCGCTGGGAAAGAGGACGCAGTTCCCACAGGGGACGTCGGG
GTAGCCAAAGCCCTCGCTAAACCTAGCGAATCTCGTGCAGCTGAATTACG
GCAAGCCAAAGAGCAAGAACGGATCAAGAACAAGAAGTTTATCAACCCGA
TAGAGATCCCTATTAAGGCAGGGCGGGCAGCGCGACGGGCGTTGGAAAGC
TTGGGTCAAGTCGAGGAGCCTGCTCCCAAGAACCCCGACGATTACCGCCT
GTATTTTGATAAAAAGTTCATGTATGCCATCCCGGCACCGAGTGAGAAAA
CTCCCACTGTGTTGGTGGTGGGAGCGACGGGGGAGACCGGGCGGCAGGTG
GTGAGGAAATTGATTCTGAAGGGGTATCGGGTGCAGGTTTTGGTGAGGAA
TTTGTACTCGACCACGCTCAATTTGTTGGGCACTGGCGTGTCGTACGTGA
AGGGGGACCTAGCGGACCTAGCTTCGTTGAGAACGGCGTGTGATGGGGCG
GATAAGGCGGTGTACGTGGCGCAGGCGAGGGATGATGGGGATGCTCGTAC
GGTGGAGTACTTGGGCCTGCGCAATCTGGCACAGGCGTTTCAGGACACCA
GATTGTCTGAGACAGGGAAGAGGGTCACGACAAAGAGGACATTGTTCAAG
TTCCGCAAGCCCGTTGACAGGGATGTCTGGGGCGTGACTCAGCCACTGGT
CGATGGAGCGGAAGGTGCGTGGACGGTCCAGGACGAGCGGTCGGGCCGGC
CTGCCTTTGTGGGGAGTTTGCCTGTGGGTCCCGGAGGATCCATTGCATTA
GAGAGTAAGAAATTAGGGCTGAATCTCTCAAAGTTTGGGGGTTTGTTGAT
GTTGTTCAAGGCCCAGGGGGATGCCCAGACCACTTTCCGGTTTGTGATAC
GCACGAGTGCATTTGCGGAACAGGGGATCCAATATGAGTTAGCCCTCCCG
CTGGTTCGAAATCGATTTACCGCTTTCAGGATGAATTTTAGAGACTTTGT
GCCGATGAAGGACGGGAGTCCTTACAAAGGTGTACTCGGCGGGTTGGGGG
GCGTGGCGGCGCTGGACCCGAGTGACGTAAAGCAATTCGCGGTGATGGTG
AAAAGAGAGCCGGCGGCGGCGGCGGGGGTGGACGAGGCGATTGCCAACCC
TGCCTTCAGTCTGACGATGGAGGGGATTAAGGTGTTCAGGGCGAGGGAAC
AGCCGGATGTAGTCGTGTTAAGTTCATCGGACATTACGCCATCGACGGCA
CTGAAGAGTTTGTCGGAAATGGAAAGGGACCCTGCATCGTTTGAGCGAGT
TGAAAGGAAAAATTACTATAAGGCCCAGGGAGAACTAGCGATGAAGAATA
CGGGGCTGGCGTATTGTATTGTAAGGATTTCGGACTTTACCTCCAGCCCG
ACGGAGGGAAGGCCGTTGAGCGTCTCGAAGAGTGGGAATAATATGGGCCT
TATCTCCAGGCCGGACACGGCTGATGTTTTGATCAATTGCTTGTTCAACC
CCACGGTTTGCAATACGGAGATTTATGCGAGTGAAAATCCGAGGTACGGA
GACCGAGATATCCAAAGGTTGTTGAATGAATTGGTGGATTTGCCGTTTTA
GATTGGAGAGGGGGGGGAAGGGAGGGAGGGAGAAAGGAAGGAAGGGAAGG
CAGGTGACAATTTATGATAGGGGAGAGTGAGTGAA

Coding sequence (CDS) from alignment at scaffold_3:974776..976910+

>mRNA_391 ID=mRNA_391|Name=jgi.p|Nanoce1779_2|577193|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at scaffold_3:974776..976910+ (Nannochloropsis oceanica)
ATGCGACTCCACATTCAAGGGGCATTACTTGCCTGCTACTTTATAGCCGA
GAGACAGGCCTTTATCTTCCCGTCTCTTCGGCCACAAAGCCCCATCCAAT
GTAGCATAACCAACCCCCCTGCCCCCTCCTCCGCCAGCAACACCAATAGC
AGAAGAATATTAGTCGCCCCAGCATGGATGACCCCCCAGTCCTCCTCATC
ATCCTCTCCTCCCTCCTCCTCCATTCAAGAAAAGGGCAAAAAGAGCCCGG
CAGCTGCAGCAGCAGCAGCAGTAGAAGTAACAGCAGCAGCAGCCGTGCCT
GCCGCTGGGAAAGAGGACGCAGTTCCCACAGGGGACGTCGGGGTAGCCAA
AGCCCTCGCTAAACCTAGCGAATCTCGTGCAGCTGAATTACGGCAAGCCA
AAGAGCAAGAACGGATCAAGAACAAGAAGTTTATCAACCCGATAGAGATC
CCTATTAAGGCAGGGCGGGCAGCGCGACGGGCGTTGGAAAGCTTGGGTCA
AGTCGAGGAGCCTGCTCCCAAGAACCCCGACGATTACCGCCTGTATTTTG
ATAAAAAGTTCATGTATGCCATCCCGGCACCGAGTGAGAAAACTCCCACT
GTGTTGGTGGTGGGAGCGACGGGGGAGACCGGGCGGCAGGTGGTGAGGAA
ATTGATTCTGAAGGGGTATCGGGTGCAGGTTTTGGTGAGGAATTTGTACT
CGACCACGCTCAATTTGTTGGGCACTGGCGTGTCGTACGTGAAGGGGGAC
CTAGCGGACCTAGCTTCGTTGAGAACGGCGTGTGATGGGGCGGATAAGGC
GGTGTACGTGGCGCAGGCGAGGGATGATGGGGATGCTCGTACGGTGGAGT
ACTTGGGCCTGCGCAATCTGGCACAGGCGTTTCAGGACACCAGATTGTCT
GAGACAGGGAAGAGGGTCACGACAAAGAGGACATTGTTCAAGTTCCGCAA
GCCCGTTGACAGGGATGTCTGGGGCGTGACTCAGCCACTGGTCGATGGAG
CGGAAGGTGCGTGGACGGTCCAGGACGAGCGGTCGGGCCGGCCTGCCTTT
GTGGGGAGTTTGCCTGTGGGTCCCGGAGGATCCATTGCATTAGAGAGTAA
GAAATTAGGGCTGAATCTCTCAAAGTTTGGGGGTTTGTTGATGTTGTTCA
AGGCCCAGGGGGATGCCCAGACCACTTTCCGGTTTGTGATACGCACGAGT
GCATTTGCGGAACAGGGGATCCAATATGAGTTAGCCCTCCCGCTGGTTCG
AAATCGATTTACCGCTTTCAGGATGAATTTTAGAGACTTTGTGCCGATGA
AGGACGGGAGTCCTTACAAAGGTGTACTCGGCGGGTTGGGGGGCGTGGCG
GCGCTGGACCCGAGTGACGTAAAGCAATTCGCGGTGATGGTGAAAAGAGA
GCCGGCGGCGGCGGCGGGGGTGGACGAGGCGATTGCCAACCCTGCCTTCA
GTCTGACGATGGAGGGGATTAAGGTGTTCAGGGCGAGGGAACAGCCGGAT
GTAGTCGTGTTAAGTTCATCGGACATTACGCCATCGACGGCACTGAAGAG
TTTGTCGGAAATGGAAAGGGACCCTGCATCGTTTGAGCGAGTTGAAAGGA
AAAATTACTATAAGGCCCAGGGAGAACTAGCGATGAAGAATACGGGGCTG
GCGTATTGTATTGTAAGGATTTCGGACTTTACCTCCAGCCCGACGGAGGG
AAGGCCGTTGAGCGTCTCGAAGAGTGGGAATAATATGGGCCTTATCTCCA
GGCCGGACACGGCTGATGTTTTGATCAATTGCTTGTTCAACCCCACGGTT
TGCAATACGGAGATTTATGCGAGTGAAAATCCGAGGTACGGAGACCGAGA
TATCCAAAGGTTGTTGAATGAATTGGTGGATTTGCCGTTTTAG

Synonyms

Publications