jgi.p|Nanoce1779_2|585801, mRNA_3907 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585801
Unique NamemRNA_3907
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1274
Alignment locationscaffold_8:367562..368835 -

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Properties
Property NameValue
TranscriptId585887
TrackFilteredModels2
ProteinId585801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:367562..368835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585801gene_3907Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585801mRNA_3907-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3907CDS_3907Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3907 ID=mRNA_3907|Name=jgi.p|Nanoce1779_2|585801|organism=Nannochloropsis oceanica|type=mRNA|length=1274bp
CAGCAGGCACAAGTTTATCGTCATCCAGCAGCAGAAAAGTAGCCAGTAGT
CTAGCCGCACCTGTCGCCCTCCTCAGCCCCGCCCCCTCGTCATTAAATTT
TGTCCTCCTTAGACCTCCAACTACCACCACACCAAGCATGCCTCAAGAGT
ACGGTACATTCTTCTCCCCCAACTCCCCCCTGGCCGCATGGCTCCGCCCA
AAGAAAAGCGAGGACGCCTTGGAAGCCGGCTCGTTGTCACATGAAGACAA
AAGCGGTGCCCCGTCCCCCCTCGGGGGGATTGCTCCCGGCTCTCCGACCC
TTTTCCACAATACCCCCACCAATAGCGACGGCAGCACGCCTAGTTTTGCT
GCCCCTGAGTCTGTCCTTCTGTTCGGTTTGTCCGCTAATCCGCCAACCGG
GCAAGCAGGGCATGCAGGCATCGTCAAGTTCCTTAAGGCGCAGAACCAAT
GGGATGAGATTTGGGTGCTTCCTGTCTATAAACACATGCATGTCAAGAAC
CGCTTGTTGGTCGACTTTGAAGACCGCTTTCAGATGTGTCGTTTGAATTT
CCTCCCCCCTCCATCTTCTTCCTCCTCTATCACCGCCTCCCCTTCGGCCC
CTGCCAAGTCCCGGACCCGTGTGCGTGTCACGCGTTTGGAGAAAGAAGTA
GCGGATCACTACATAGAAGAAGCAGCGGCCAGGGGAAAGGGTCCCGAGGC
GGTGAAGGTGGGGACGATCGACGTGGTGATGTATGCGAAGGAACGGTTGC
CGAACACGGAGTTTAGTTTGGTGTTGGGTGAGTGGGGGAAGGGAGGGAGG
GAGAGAGGCTGGGGCGTCAGGAAGGGAAACCTTGGTTGACCCTTAACGAT
ACAGTTAGGAAGTTCTCTCCCCAAGTCAATGCTTCTACTACTGCTCCACT
CACTAATGATGGCATCTTTACTCCAAACGGCCTCGCCCCTCCCCCCTGCG
ATCTGTCTTTACCATCACCCTCCAGGCACCGACACTTTCAACGACATGAA
AAAAGGAAAATGGAAACGTGGCCGCGAGCTCCTCGACCTCGTTTCTGTCG
TCATCGTCTCCCGTCCTGGAGTATCATACGCCCTGCAAGACGATGACGTG
ACCAACCCGCGGCTGCACTTTTTTAACGTGCCTTCCCTAGGCGAGGTGTC
TTCAACGGCAGTCCGAAAAACGACGGACTTGAGATTATTGCGTGAGGTAC
TAGAGCCCAGGGTACTGGAGTACATTCGAGAGAGAGGGCTGTACGCTTTG
GGGAGGGTGGAGGGAGGGATGGGC
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protein sequence of jgi.p|Nanoce1779_2|585801

>mRNA_3907-protein ID=mRNA_3907-protein|Name=jgi.p|Nanoce1779_2|585801|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPQEYGTFFSPNSPLAAWLRPKKSEDALEAGSLSHEDKSGAPSPLGGIAP
GSPTLFHNTPTNSDGSTPSFAAPESVLLFGLSANPPTGQAGHAGIVKFLK
AQNQWDEIWVLPVYKHMHVKNRLLVDFEDRFQMCRLNFLPPPSSSSSITA
SPSAPAKSRTRVRVTRLEKEVADHYIEEAAARGKGPEAVKVGTIDVVMYA
KERLPNTEFSLVLGEWGKGGRERGWGVRKGNLG*
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mRNA from alignment at scaffold_8:367562..368835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3907 ID=mRNA_3907|Name=jgi.p|Nanoce1779_2|585801|organism=Nannochloropsis oceanica|type=mRNA|length=1274bp|location=Sequence derived from alignment at scaffold_8:367562..368835- (Nannochloropsis oceanica)
CAGCAGGCACAAGTTTATCGTCATCCAGCAGCAGAAAAGTAGCCAGTAGT
CTAGCCGCACCTGTCGCCCTCCTCAGCCCCGCCCCCTCGTCATTAAATTT
TGTCCTCCTTAGACCTCCAACTACCACCACACCAAGCATGCCTCAAGAGT
ACGGTACATTCTTCTCCCCCAACTCCCCCCTGGCCGCATGGCTCCGCCCA
AAGAAAAGCGAGGACGCCTTGGAAGCCGGCTCGTTGTCACATGAAGACAA
AAGCGGTGCCCCGTCCCCCCTCGGGGGGATTGCTCCCGGCTCTCCGACCC
TTTTCCACAATACCCCCACCAATAGCGACGGCAGCACGCCTAGTTTTGCT
GCCCCTGAGTCTGTCCTTCTGTTCGGTTTGTCCGCTAATCCGCCAACCGG
GCAAGCAGGGCATGCAGGCATCGTCAAGTTCCTTAAGGCGCAGAACCAAT
GGGATGAGATTTGGGTGCTTCCTGTCTATAAACACATGCATGTCAAGAAC
CGCTTGTTGGTCGACTTTGAAGACCGCTTTCAGATGTGTCGTTTGAATTT
CCTCCCCCCTCCATCTTCTTCCTCCTCTATCACCGCCTCCCCTTCGGCCC
CTGCCAAGTCCCGGACCCGTGTGCGTGTCACGCGTTTGGAGAAAGAAGTA
GCGGATCACTACATAGAAGAAGCAGCGGCCAGGGGAAAGGGTCCCGAGGC
GGTGAAGGTGGGGACGATCGACGTGGTGATGTATGCGAAGGAACGGTTGC
CGAACACGGAGTTTAGTTTGGTGTTGGGTGAGTGGGGGAAGGGAGGGAGG
GAGAGAGGCTGGGGCGTCAGGAAGGGAAACCTTGGTTGACCCTTAACGAT
ACAGTTAGGAAGTTCTCTCCCCAAGTCAATGCTTCTACTACTGCTCCACT
CACTAATGATGGCATCTTTACTCCAAACGGCCTCGCCCCTCCCCCCTGCG
ATCTGTCTTTACCATCACCCTCCAGGCACCGACACTTTCAACGACATGAA
AAAAGGAAAATGGAAACGTGGCCGCGAGCTCCTCGACCTCGTTTCTGTCG
TCATCGTCTCCCGTCCTGGAGTATCATACGCCCTGCAAGACGATGACGTG
ACCAACCCGCGGCTGCACTTTTTTAACGTGCCTTCCCTAGGCGAGGTGTC
TTCAACGGCAGTCCGAAAAACGACGGACTTGAGATTATTGCGTGAGGTAC
TAGAGCCCAGGGTACTGGAGTACATTCGAGAGAGAGGGCTGTACGCTTTG
GGGAGGGTGGAGGGAGGGATGGGC
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Coding sequence (CDS) from alignment at scaffold_8:367562..368835-

>mRNA_3907 ID=mRNA_3907|Name=jgi.p|Nanoce1779_2|585801|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_8:367562..368835- (Nannochloropsis oceanica)
ATGCCTCAAGAGTACGGTACATTCTTCTCCCCCAACTCCCCCCTGGCCGC
ATGGCTCCGCCCAAAGAAAAGCGAGGACGCCTTGGAAGCCGGCTCGTTGT
CACATGAAGACAAAAGCGGTGCCCCGTCCCCCCTCGGGGGGATTGCTCCC
GGCTCTCCGACCCTTTTCCACAATACCCCCACCAATAGCGACGGCAGCAC
GCCTAGTTTTGCTGCCCCTGAGTCTGTCCTTCTGTTCGGTTTGTCCGCTA
ATCCGCCAACCGGGCAAGCAGGGCATGCAGGCATCGTCAAGTTCCTTAAG
GCGCAGAACCAATGGGATGAGATTTGGGTGCTTCCTGTCTATAAACACAT
GCATGTCAAGAACCGCTTGTTGGTCGACTTTGAAGACCGCTTTCAGATGT
GTCGTTTGAATTTCCTCCCCCCTCCATCTTCTTCCTCCTCTATCACCGCC
TCCCCTTCGGCCCCTGCCAAGTCCCGGACCCGTGTGCGTGTCACGCGTTT
GGAGAAAGAAGTAGCGGATCACTACATAGAAGAAGCAGCGGCCAGGGGAA
AGGGTCCCGAGGCGGTGAAGGTGGGGACGATCGACGTGGTGATGTATGCG
AAGGAACGGTTGCCGAACACGGAGTTTAGTTTGGTGTTGGGTGAGTGGGG
GAAGGGAGGGAGGGAGAGAGGCTGGGGCGTCAGGAAGGGAAACCTTGGTT
GA
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Synonyms
Publications