jgi.p|Nanoce1779_2|585798, mRNA_3906 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585798
Unique NamemRNA_3906
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length994
Alignment locationscaffold_8:366124..367117 +

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Properties
Property NameValue
TranscriptId585884
TrackFilteredModels2
ProteinId585798
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:366124..367117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585798gene_3906Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585798mRNA_3906-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3906CDS_3906Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3906 ID=mRNA_3906|Name=jgi.p|Nanoce1779_2|585798|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
CAGCGCACCTGTACCCTTCCCCAACCCAACATCATGGCCTGCAACGCCTG
TATGACCATTCCCCCGGTCGAAGCTTTATACACCCCCCAAGGCCAAACAA
TCACCACCGCCGATGGCTTAGAGATCTATGTTGCCAATCCCCCTACTCCT
AGTACCACTGCCGCAGGCATCATTTACGTCCCCGATATTTTCGGCAAAAC
CTCCCAGGCGCTTCAAGTATGTGATAAACTCGCCGCGGCTGGTTTTTGGG
TGGCCTTTCCCGATGTCTTTCGAGGCGCCCCATGGCCGATGGAGAAGTTT
CCACCCCCGGATCGAGAGGAATTGATGACTTGGATTGGTGGGTACGGTTT
TGAGGAGAAGGTCAAGCCGGACGTGGCTCAGGCCTTGAAGATCCTGCGGG
AGAAGGGGGGAGGAGAGATGAAAATGGGCATTGTCGGCTTTTGCTGGGGG
GGGAAGATGAGTACGTTAAGTGGTGAGGATGCGGGAACCTTCCAGGCGTC
GGCTGCGGCTCACCCTAGTTTCTTGACGGTGGAAGACGCCAAGGTCGTAA
ATTGTCCGATCTTGCTGTTGCCGTCGAAGGACGAGGCAGACTTAAGTGGC
TTCATTGAGGCAGTGACTGGGAAGGGGGTGGAGGCCAGGCAGGTGGTGTT
TGGGGACATGCACCATGGGTGGGTGGCGGCCAGGGGGGACTGGACGGATG
AGAAACAAAGGGTACGTGCGACCGAGGCGATACAGCACTTTGTCGATTTT
TTTTCGGAAAAATTGAAGAAGTAGGAAGGAGGGAAATTAGGGTGGGAAGG
AGGGAAGGCATGAGGGAGATGGTGGTGGCTTTAGCGTGGCTGAGTGTGAG
AGATAATCCATGGACGGTCAAGATCCAGAAAATGTGCAGAAAAAAGTGAG
GAAATACCAAGAAAAGAGAGAGCGCGGGGTGACGAATGAGAGAGAATGAA
AAGCGAGCAGGCAGAGAAGGAAACACAGGCGTAACGCTTTACGA
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protein sequence of jgi.p|Nanoce1779_2|585798

>mRNA_3906-protein ID=mRNA_3906-protein|Name=jgi.p|Nanoce1779_2|585798|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MACNACMTIPPVEALYTPQGQTITTADGLEIYVANPPTPSTTAAGIIYVP
DIFGKTSQALQVCDKLAAAGFWVAFPDVFRGAPWPMEKFPPPDREELMTW
IGGYGFEEKVKPDVAQALKILREKGGGEMKMGIVGFCWGGKMSTLSGEDA
GTFQASAAAHPSFLTVEDAKVVNCPILLLPSKDEADLSGFIEAVTGKGVE
ARQVVFGDMHHGWVAARGDWTDEKQRVRATEAIQHFVDFFSEKLKK*
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mRNA from alignment at scaffold_8:366124..367117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3906 ID=mRNA_3906|Name=jgi.p|Nanoce1779_2|585798|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at scaffold_8:366124..367117+ (Nannochloropsis oceanica)
CAGCGCACCTGTACCCTTCCCCAACCCAACATCATGGCCTGCAACGCCTG
TATGACCATTCCCCCGGTCGAAGCTTTATACACCCCCCAAGGCCAAACAA
TCACCACCGCCGATGGCTTAGAGATCTATGTTGCCAATCCCCCTACTCCT
AGTACCACTGCCGCAGGCATCATTTACGTCCCCGATATTTTCGGCAAAAC
CTCCCAGGCGCTTCAAGTATGTGATAAACTCGCCGCGGCTGGTTTTTGGG
TGGCCTTTCCCGATGTCTTTCGAGGCGCCCCATGGCCGATGGAGAAGTTT
CCACCCCCGGATCGAGAGGAATTGATGACTTGGATTGGTGGGTACGGTTT
TGAGGAGAAGGTCAAGCCGGACGTGGCTCAGGCCTTGAAGATCCTGCGGG
AGAAGGGGGGAGGAGAGATGAAAATGGGCATTGTCGGCTTTTGCTGGGGG
GGGAAGATGAGTACGTTAAGTGGTGAGGATGCGGGAACCTTCCAGGCGTC
GGCTGCGGCTCACCCTAGTTTCTTGACGGTGGAAGACGCCAAGGTCGTAA
ATTGTCCGATCTTGCTGTTGCCGTCGAAGGACGAGGCAGACTTAAGTGGC
TTCATTGAGGCAGTGACTGGGAAGGGGGTGGAGGCCAGGCAGGTGGTGTT
TGGGGACATGCACCATGGGTGGGTGGCGGCCAGGGGGGACTGGACGGATG
AGAAACAAAGGGTACGTGCGACCGAGGCGATACAGCACTTTGTCGATTTT
TTTTCGGAAAAATTGAAGAAGTAGGAAGGAGGGAAATTAGGGTGGGAAGG
AGGGAAGGCATGAGGGAGATGGTGGTGGCTTTAGCGTGGCTGAGTGTGAG
AGATAATCCATGGACGGTCAAGATCCAGAAAATGTGCAGAAAAAAGTGAG
GAAATACCAAGAAAAGAGAGAGCGCGGGGTGACGAATGAGAGAGAATGAA
AAGCGAGCAGGCAGAGAAGGAAACACAGGCGTAACGCTTTACGA
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Coding sequence (CDS) from alignment at scaffold_8:366124..367117+

>mRNA_3906 ID=mRNA_3906|Name=jgi.p|Nanoce1779_2|585798|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_8:366124..367117+ (Nannochloropsis oceanica)
ATGGCCTGCAACGCCTGTATGACCATTCCCCCGGTCGAAGCTTTATACAC
CCCCCAAGGCCAAACAATCACCACCGCCGATGGCTTAGAGATCTATGTTG
CCAATCCCCCTACTCCTAGTACCACTGCCGCAGGCATCATTTACGTCCCC
GATATTTTCGGCAAAACCTCCCAGGCGCTTCAAGTATGTGATAAACTCGC
CGCGGCTGGTTTTTGGGTGGCCTTTCCCGATGTCTTTCGAGGCGCCCCAT
GGCCGATGGAGAAGTTTCCACCCCCGGATCGAGAGGAATTGATGACTTGG
ATTGGTGGGTACGGTTTTGAGGAGAAGGTCAAGCCGGACGTGGCTCAGGC
CTTGAAGATCCTGCGGGAGAAGGGGGGAGGAGAGATGAAAATGGGCATTG
TCGGCTTTTGCTGGGGGGGGAAGATGAGTACGTTAAGTGGTGAGGATGCG
GGAACCTTCCAGGCGTCGGCTGCGGCTCACCCTAGTTTCTTGACGGTGGA
AGACGCCAAGGTCGTAAATTGTCCGATCTTGCTGTTGCCGTCGAAGGACG
AGGCAGACTTAAGTGGCTTCATTGAGGCAGTGACTGGGAAGGGGGTGGAG
GCCAGGCAGGTGGTGTTTGGGGACATGCACCATGGGTGGGTGGCGGCCAG
GGGGGACTGGACGGATGAGAAACAAAGGGTACGTGCGACCGAGGCGATAC
AGCACTTTGTCGATTTTTTTTCGGAAAAATTGAAGAAGTAG
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Synonyms
Publications