jgi.p|Nanoce1779_2|585784, mRNA_3903 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585784
Unique NamemRNA_3903
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_8:353797..355061 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585870
TrackFilteredModels2
ProteinId585784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:353797..355061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585784gene_3903Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585784mRNA_3903-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3903CDS_3903Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3903 ID=mRNA_3903|Name=jgi.p|Nanoce1779_2|585784|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
ACAGGGCTTGGTCTCCACTCTACGATCCACCATGGCTGCCGCCGCCGTCT
CCGCTGCCGGCAGCCTGCTGGCTTGGATTCAAGCGACCTTTGAGCCGCTA
ACAACGATTGAATTCAAGGAGGACGTATGCATGGCCGTCTTTATATACGT
CATAGGCTATGCTGCCTTGGGTGGCTTCTCGCCTTTGATGCACGTCAAGC
GCAAGGCCTGGATCTTGAGCGTGTTGTGTGCCGTAGGGATGAGCTTGGGC
TCAATCCCGTACGTGTGGAAGCTGGCCACTAAGCATGGTTTTGTGACAGG
AGAGATGGTTTACGCCGACGACCGACTCAGCCTCTTTATCATGGCCTTTT
TCATGACATTCCTGGTGTTGGATCTGGTCATCGGCTTCGGGCACTACGCG
GGGGAGATTGGGCTGTTGACGGGTTGGTTCCACCATTGTTTGTACATGGG
AATGTGTGTATGGGCGGTGGTGAATGGCATCAGCATCTCAGCCGTGGCGA
CGATGATTATGGAGATCCCTACATTAGTTATGGCCCTTGGTCGTGTATAC
AAGGGATTGAGGTCCGATTTTTTGTTTGGTTTTACTTTTTTGGTGACGCG
GATTTTGTATTTGGGGTTTTACATTTATAGGCTTATGTGTGATGTCAGTC
CACGGGTGGTGGTCTGGCCAGTGTGTGTGCCGGCAATGATCTTGCACGTA
TTTTGGTTCCAGGGATTTATTCAACAGCAGCGGCGGTTGAGAAAGTTGTA
CTCGGAGGGAGGAGCAGTGGGAGACAGAGGAAGGGGAGGGAAGCAGGTGA
TGGAGGGGGAGAATGAGAAGGGAGGCAAGGCGGCGTAGGATATAAGAGAA
AAGAAGAGGCTTGCATGTTTCCTGAGGGGTACAATGAAGTCGAGAGGAGA
AGGAGGGGGAAAGATGGACGTACGGCATCGAGGGTTAAACAGAGAGGGAA
GGGGCCGCTGTAGGATGCGCCTTCACCAACAGCTGTCACACCCCCCCTTC
CCCCCCTCGTTCTCACACACATGCATATAAATCTTTCATGCATCGCCTTA
AGCTGATCTTCTTTCTTCAAAGTGGCGCCTGGCCATTCCTCTCTCCCATT
CACTTGTCTGCTTTGTGATGAGAGAGACGACATGGCATTCCTCATTCTTG
CCATTGGGGAGAAGTAGAATTAAGCACTGACAAAAAGGTAGATTGACCGA
AGAATATAAAGTGAGAGAGACAGGGAGAAAGAACAACAAAGTACCAAGCA
AAAAATTTAATAGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|585784

>mRNA_3903-protein ID=mRNA_3903-protein|Name=jgi.p|Nanoce1779_2|585784|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MAAAAVSAAGSLLAWIQATFEPLTTIEFKEDVCMAVFIYVIGYAALGGFS
PLMHVKRKAWILSVLCAVGMSLGSIPYVWKLATKHGFVTGEMVYADDRLS
LFIMAFFMTFLVLDLVIGFGHYAGEIGLLTGWFHHCLYMGMCVWAVVNGI
SISAVATMIMEIPTLVMALGRVYKGLRSDFLFGFTFLVTRILYLGFYIYR
LMCDVSPRVVVWPVCVPAMILHVFWFQGFIQQQRRLRKLYSEGGAVGDRG
RGGKQVMEGENEKGGKAA*
back to top

mRNA from alignment at scaffold_8:353797..355061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3903 ID=mRNA_3903|Name=jgi.p|Nanoce1779_2|585784|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp|location=Sequence derived from alignment at scaffold_8:353797..355061- (Nannochloropsis oceanica)
ACAGGGCTTGGTCTCCACTCTACGATCCACCATGGCTGCCGCCGCCGTCT
CCGCTGCCGGCAGCCTGCTGGCTTGGATTCAAGCGACCTTTGAGCCGCTA
ACAACGATTGAATTCAAGGAGGACGTATGCATGGCCGTCTTTATATACGT
CATAGGCTATGCTGCCTTGGGTGGCTTCTCGCCTTTGATGCACGTCAAGC
GCAAGGCCTGGATCTTGAGCGTGTTGTGTGCCGTAGGGATGAGCTTGGGC
TCAATCCCGTACGTGTGGAAGCTGGCCACTAAGCATGGTTTTGTGACAGG
AGAGATGGTTTACGCCGACGACCGACTCAGCCTCTTTATCATGGCCTTTT
TCATGACATTCCTGGTGTTGGATCTGGTCATCGGCTTCGGGCACTACGCG
GGGGAGATTGGGCTGTTGACGGGTTGGTTCCACCATTGTTTGTACATGGG
AATGTGTGTATGGGCGGTGGTGAATGGCATCAGCATCTCAGCCGTGGCGA
CGATGATTATGGAGATCCCTACATTAGTTATGGCCCTTGGTCGTGTATAC
AAGGGATTGAGGTCCGATTTTTTGTTTGGTTTTACTTTTTTGGTGACGCG
GATTTTGTATTTGGGGTTTTACATTTATAGGCTTATGTGTGATGTCAGTC
CACGGGTGGTGGTCTGGCCAGTGTGTGTGCCGGCAATGATCTTGCACGTA
TTTTGGTTCCAGGGATTTATTCAACAGCAGCGGCGGTTGAGAAAGTTGTA
CTCGGAGGGAGGAGCAGTGGGAGACAGAGGAAGGGGAGGGAAGCAGGTGA
TGGAGGGGGAGAATGAGAAGGGAGGCAAGGCGGCGTAGGATATAAGAGAA
AAGAAGAGGCTTGCATGTTTCCTGAGGGGTACAATGAAGTCGAGAGGAGA
AGGAGGGGGAAAGATGGACGTACGGCATCGAGGGTTAAACAGAGAGGGAA
GGGGCCGCTGTAGGATGCGCCTTCACCAACAGCTGTCACACCCCCCCTTC
CCCCCCTCGTTCTCACACACATGCATATAAATCTTTCATGCATCGCCTTA
AGCTGATCTTCTTTCTTCAAAGTGGCGCCTGGCCATTCCTCTCTCCCATT
CACTTGTCTGCTTTGTGATGAGAGAGACGACATGGCATTCCTCATTCTTG
CCATTGGGGAGAAGTAGAATTAAGCACTGACAAAAAGGTAGATTGACCGA
AGAATATAAAGTGAGAGAGACAGGGAGAAAGAACAACAAAGTACCAAGCA
AAAAATTTAATAGAA
back to top

Coding sequence (CDS) from alignment at scaffold_8:353797..355061-

>mRNA_3903 ID=mRNA_3903|Name=jgi.p|Nanoce1779_2|585784|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at scaffold_8:353797..355061- (Nannochloropsis oceanica)
ATGGCTGCCGCCGCCGTCTCCGCTGCCGGCAGCCTGCTGGCTTGGATTCA
AGCGACCTTTGAGCCGCTAACAACGATTGAATTCAAGGAGGACGTATGCA
TGGCCGTCTTTATATACGTCATAGGCTATGCTGCCTTGGGTGGCTTCTCG
CCTTTGATGCACGTCAAGCGCAAGGCCTGGATCTTGAGCGTGTTGTGTGC
CGTAGGGATGAGCTTGGGCTCAATCCCGTACGTGTGGAAGCTGGCCACTA
AGCATGGTTTTGTGACAGGAGAGATGGTTTACGCCGACGACCGACTCAGC
CTCTTTATCATGGCCTTTTTCATGACATTCCTGGTGTTGGATCTGGTCAT
CGGCTTCGGGCACTACGCGGGGGAGATTGGGCTGTTGACGGGTTGGTTCC
ACCATTGTTTGTACATGGGAATGTGTGTATGGGCGGTGGTGAATGGCATC
AGCATCTCAGCCGTGGCGACGATGATTATGGAGATCCCTACATTAGTTAT
GGCCCTTGGTCGTGTATACAAGGGATTGAGGTCCGATTTTTTGTTTGGTT
TTACTTTTTTGGTGACGCGGATTTTGTATTTGGGGTTTTACATTTATAGG
CTTATGTGTGATGTCAGTCCACGGGTGGTGGTCTGGCCAGTGTGTGTGCC
GGCAATGATCTTGCACGTATTTTGGTTCCAGGGATTTATTCAACAGCAGC
GGCGGTTGAGAAAGTTGTACTCGGAGGGAGGAGCAGTGGGAGACAGAGGA
AGGGGAGGGAAGCAGGTGATGGAGGGGGAGAATGAGAAGGGAGGCAAGGC
GGCGTAG
back to top
Synonyms
Publications