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Properties
| Property Name | Value |
|---|
| TranscriptId | 585853 |
| Track | FilteredModels2 |
| ProteinId | 585767 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:344920..349089 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3901 ID=mRNA_3901|Name=jgi.p|Nanoce1779_2|585767|organism=Nannochloropsis oceanica|type=mRNA|length=3707bp
AGTGAGAGTGAAGAGTGAAGTATAGGTCAGTTGCTGTGATTGTGGTGGGT
CATCGACACGGCTAAGATGCTGGGTAGCTGTGTGTCGTCGGGTGGGACAG
GAGGTTGCCAACTGTGTGTCTGTTCAGACTCAATATTGAACTCAAGAAAC
ATTTAATCAATCAATGAATGAATCAATCAACACAACAAGGTCTCCTCCGC
TAGACATGTCGATGGATACAAATGACCCATCGAGTATTTTGATACCTTAT
GGGGTTTGGTCATGGTCACAATCGATCTCACACGAGAATCTCAAGTAATG
TCAATCGAGCAATATGAGGGACATGATACATCACCAAAAGGAAAGAAGGC
GCCCGCAGCAATGCATTACAATGATAACTATTCTAATTTCCCCATATTTT
CCTTGCACAAGCGTGCTAGCTCTGTCGGAAACTCCTAGGCCTGGTGTGGT
GAGGCAGAGGAGCGGCAATAATGGTCGTCCTCGTCAAGGGTCAATTTCAG
CAACGCATGGGCCGGATTCCTGCAGATCGGACACCGGCTATCCTGGCTCT
GGATGCACTCTGCCGCACACGCCCGACACACACACATATGCCTGCAGGGC
AATATGGCCAACTCCCGTTTATTCGTCAGACATACCACGCATTCTGCGCG
GTTTATTTCTTGCTCCACCTCCTCTTTCTCAGCAGTCGCACTTTTACTAG
CACCGCCATCGTCACCCTCCTTCCAACCGCTTTCGCTGTTGCCTCCCCCA
CCTGCGCTGGCCATCGATCCCGCAATACCGTATATATCCTGCAACACAAA
CACGCCATCGGGCGTCTCAATTTTCTGCTTCACCACCCGCCCTACCCATG
CATCCTCCTTTCCTTTTCTTTCTCCAACACTTCCAACAATTTTTACACTA
TGTGTTAAACTCATTACCGTCACTTGGGCGAACACTTCCCCTCTTTCTTT
TCCCTCCTTCCCCTGACCTACATCATCATCCTCCTCAACACAAGGCCTCA
ACACAATGAACACACTTAAATCCTCTTTCTCATTACTCTTGACCTTCCCT
CCCGCGACTCCTCTTCCTCCTTCTCCTTCTAGACTGGCTTTCAGTAAGTC
AGCACCCTGGTACCCCAAGGCCGCCGTCGAGTACATTTGGTTTGCTCCAG
CCTCAAAACGGTGCGGGCCCACCACCCACTCTTCTTCCACGGACATGAGG
GTTTTATGACAGAGTCCACCTGCCTCGTCCTTCCCCTCAGTTGCTACCCA
AAACACTGCCACATTGCACGGCACAGTAGCATCAAACCGGAAGGAGAGGT
GGAACCTTCCTCCACCACAAATGCTGCTGCTGCTGCTGTATTCCTCTTGC
CCTGATGGTTGGAAGTTAGGAGGGACAAGTCGCACAGTGTCCTTGCGTAC
GTGGCAGGCGTTGCGCACCATCTTTGTTTTTTGAACGACTGTTTGCGGTC
CTGTTGGGGGATTTGGGGCCCATGATCCATGCATCCGTCTTCTACCACCA
CCGGCATTTCCTGCAGCGGCAGCAAGGTCGTTGACGATACGATCACCGCC
AGTCATGGCCTCGAGGCGGACGCCGCCGTAGGCCTCCCGGGACCCTGCGG
GAGGCTGCCGACCTGGAGAGGGGGTGGAGAACAGAGGAGTTGGGCTTCGG
CGCCGAAAACCATCACTATGGCAACGACATACCTTGGGCGTTGGGCGGGG
TCATGCTTGTGGAATGGTTGCCCATGCCTTTGTCTTGATTATGTATGCAA
GGGTGCGCCGGTCGATTATTGCCAGAACAATGGGCGAGTGAGTGCTTGAC
GGGGGGGACTGACTTGTGGGAAGACCTTGCGTCGTTCGACTTGCGTCGTT
CTGCCACCGCTTCAGTTGTAGTACACTCTCTATCAACGCTATGTGTGGCT
GTAGGGTCGTGTGAAAACGAATGCATTCGCAAGAGGCAAAACTGGACATG
CAAAAGAGGCCGCCTCTCAGCGAGGCGATGACCTCCCCTCCTTCTCATTC
TCGACTCAGACACAAAAACCACGCATACAGCACAGAAAGCAGCAGCAGCA
GCAGCGGCAGCCGCAAGCATGATAGCGGCATCAAGCTCGCGGTCATGCAG
CAGAAGCCGTGGGAGAAGAAGAGTGTATTTTCATCTTTTCCTCTTCCTCC
TGCTGCTGCCCTATCTCGCCTCCTCTTTCCAGCATTCGCTTCGACAAAGC
CGGCAGTCCTCCACCACCTTCGGTCGTCTCGGCCTTCACAGCAGCAGAAG
TAGAAGTAGTTCCATCGCCACATCCGCTTCTGTTACCAGCCTGTCCCCAG
TACAAGCAGTCACCCTCACTCAAGTTGAGATACGTCAGGCGACCGTCAAG
GACTTTCCTGCCATAGCTGAGTCACGCAAAGCCATCATTTTTGTGCCCAA
ACAAGGCGGGGGCAGTGGAGCCGGGGCCATCCGTCGCGCCCTCGAGGAAG
CTACATCTAAAGAAGAACGTGAAATTCTCTCCAAAATTCCCTATTTAGTT
ACAAAGCAGGCAATTGCATTTATCGCGGTAGGTCGACCATGTCTTAGCCC
AGGGGGCGCGCGTGGCAGCAGCAGCAGCAGCAGACCCCGGGTGGTGGGGA
CGGTGGATGTTTTTGAACGAGAGGCGGAAGGCTCGACATTACCTCGAAGA
TTATTTCTTAAGAATATGATTGTGGACGAGGCCTTTCGAAGGCAGGGGTT
CGCACGTCGTCTCCTCTCGAGGGTTGAGGAACATGCAAGGAACATAGGGA
TCAAAGAAGTGTATTTGGAAGTGCTTGCAAATAATGAGGGGGCCATACAG
CTGTATACACAGCAAGGATTCCAGTTCACATCGAATCCTATGGAGTTGCT
GTGGCGGGTGTTGGGGATTGGGAGAGTTACGATGGTGAAGAAGTTGTGAG
CGAGGGAGAGAGGGGGAAGAAAAAGGGAATTATGGATCCCCATGTAAATA
CGTAGCTGAATAACAGACACAATGTGATGGAAAGCGGCAGCAACGGTAGT
CGTCATGAACTCGGTCCATAGGCGAAAACAACGAGATTAATAGATGGATG
AAAAAAAAAGGGACAACAAACGATTTGGAGTAAGTCGCAGCACGACTTGC
CTATATGCGTGTGTGCAAGGTGTGTTTTTAAAAGGGGCCTCTCTGAATAG
AGATATCTAATTGCCTTGGCCACCGGACGACACAATATTATGTTGTCAGT
CGTAAATCATCCGGTCCTGCGATTATGGATGCCATCATACTACTAGCCGT
CGTAGTCGCCGTAGTCGTTGTAGATCGAGATGATGCACGATTATTAGTCG
TCATAGCCGTCCATTCCTACGATTATGCACGACTTTAAGTCGTCATAGCT
GTTGCGACGACTATTTGTTGTGTACGCACGTACGTAGAGGTTTGTTGTGT
GTACTACAGTAGTCGTAGGTCGACGAAGCAACGACTGTAACGAGAGGACG
ACTCGTCTCTCATCATCGATATATGCACGGTTTGCGACGACTACTATTCG
TACCTGTTTTTTGAATTGTTGAACCCCTCTCGCTCTGTCGTTTTGGTATG
TGTGTGTGCACCAGCACAACTGTGCACCACACCAAGCTTTTCGCTGTAAA
CTCACCCGTGTCCTCCCTCCCTTCCGGACCTGATGGCCCTCCCACATCAC
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCC back to topprotein sequence of jgi.p|Nanoce1779_2|585767 >mRNA_3901-protein ID=mRNA_3901-protein|Name=jgi.p|Nanoce1779_2|585767|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MIAASSSRSCSRSRGRRRVYFHLFLFLLLLPYLASSFQHSLRQSRQSSTT
FGRLGLHSSRSRSSSIATSASVTSLSPVQAVTLTQVEIRQATVKDFPAIA
ESRKAIIFVPKQGGGSGAGAIRRALEEATSKEEREILSKIPYLVTKQAIA
FIAVGRPCLSPGGARGSSSSSRPRVVGTVDVFEREAEGSTLPRRLFLKNM
IVDEAFRRQGFARRLLSRVEEHARNIGIKEVYLEVLANNEGAIQLYTQQG
FQFTSNPMELLWRVLGIGRVTMVKKL* back to topmRNA from alignment at scaffold_8:344920..349089- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3901 ID=mRNA_3901|Name=jgi.p|Nanoce1779_2|585767|organism=Nannochloropsis oceanica|type=mRNA|length=4170bp|location=Sequence derived from alignment at scaffold_8:344920..349089- (Nannochloropsis oceanica)
AGTGAGAGTGAAGAGTGAAGTATAGGTCAGTTGCTGTGATTGTGGTGGGT
CATCGACACGGCTAAGATGCTGGGTAGCTGTGTGTCGTCGGGTGGGACAG
GAGGTTGCCAACTGTGTGTCTGTTCAGACTCAATATTGAACTCAAGAAAC
ATTTAATCAATCAATGAATGAATCAATCAACACAACAAGGTCTCCTCCGC
TAGACATGTCGATGGATACAAATGACCCATCGAGTATTTTGATACCTTAT
GGGGTTTGGTCATGGTCACAATCGATCTCACACGAGAATCTCAAGTAATG
TCAATCGAGCAATATGAGGGACATGATACATCACCAAAAGGAAAGAAGGC
GCCCGCAGCAATGCATTACAATGATAACTATTCTAATTTCCCCATATTTT
CCTTGCACAAGCGTGCTAGCTCTGTCGGAAACTCCTAGGCCTGGTGTGGT
GAGGCAGAGGAGCGGCAATAATGGTCGTCCTCGTCAAGGGTCAATTTCAG
CAACGCATGGGCCGCTGTGAGTGTGTATTAGAGTGTGAGATAAGGTCCCG
GCTTCCATGTGCATGCCTCACCCCCCCAAATCCATCCCTTACCCCCCTCC
CCCCTTCCCTCCCTCAACTCACGATTCCTGCAGATCGGACACCGGCTATC
CTGGCTCTGGATGCACTCTGCCGCACACGCCCGACACACACACATATGCC
TGCAGGGCAATATGGCCAACTCCCGTTTATTCGTCAGACATACCACGCAT
TCTGCGCGGTTTATTTCTTGCTCCACCTCCTCTTTCTCAGCAGTCGCACT
TTTACTAGCACCGCCATCGTCACCCTCCTTCCAACCGCTTTCGCTGTTGC
CTCCCCCACCTGCGCTGGCCATCGATCCCGCAATACCGTATATATCCTGC
AACACAAACACGCCATCGGGCGTCTGAAGAATGAGGGAAGGATGGAAGAA
AGGTAAGGCGGAAGGAGAAAGAGAAAGGAGGAAAGGAGAATTATGAGCCC
CAGGTCCAGGTCAGGGAAAAACAGAATTTGGCACTTCCATTAAGTTTACT
GACCCTTACTTCCCACCGTCATACCTCAATTTTCTGCTTCACCACCCGCC
CTACCCATGCATCCTCCTTTCCTTTTCTTTCTCCAACACTTCCAACAATT
TTTACACTATGTGTTAAACTCATTACCGTCACTTGGGCGAACACTTCCCC
TCTTTCTTTTCCCTCCTTCCCCTGACCTACATCATCATCCTCCTCAACAC
AAGGCCTCAACACAATGAACACACTTAAATCCTCTTTCTCATTACTCTTG
ACCTTCCCTCCCGCGACTCCTCTTCCTCCTTCTCCTTCTAGACTGGCTTT
CAGTAAGTCAGCACCCTGGTACCCCAAGGCCGCCGTCGAGTACATTTGGT
TTGCTCCAGCCTCAAAACGGTGCGGGCCCACCACCCACTCTTCTTCCACG
GACATGAGGGTTTTATGACTGGGAAGGGTGAGAGGGAGGCAGGAAGAGGC
AGGGAGATAGGACGAGATGAATAAATTTGAATTTCGTGTTGCTTCTCCCT
TGTTGTCATGAAGACTTACCAGAGTCCACCTGCCTCGTCCTTCCCCTCAG
TTGCTACCCAAAACACTGCCACATTGCACGGCACAGTAGCATCAAACCGG
AAGGAGAGGTGGAACCTTCCTCCACCACAAATGCTGCTGCTGCTGCTGTA
TTCCTCTTGCCCTGATGGTTGGAAGTTAGGAGGGACAAGTCGCACAGTGT
CCTTGCGTACGTGGCAGGCGTTGCGCACCATCTTTGTTTTTTGAACGACT
GTTTGCGGTCCTGTTGGGGGATTTGGGGCCTGCGTATGGGAGGTGTGAGA
GAAGGAGAGAGAGCGGGGAGGAGGAGGGGTAAGGCTTCTTAGGGTTCTGC
GTATGACGAGAAAGTTTTCACGCAACACGTACCCATGATCCATGCATCCG
TCTTCTACCACCACCGGCATTTCCTGCAGCGGCAGCAAGGTCGTTGACGA
TACGATCACCGCCAGTCATGGCCTCGAGGCGGACGCCGCCGTAGGCCTCC
CGGGACCCTGCGGGAGGCTGCCGACCTGGAGAGGGGGTGGAGAACAGAGG
AGTTGGGCTTCGGCGCCGAAAACCATCACTATGGCAACGACATACCTTGG
GCGTTGGGCGGGGTCATGCTTGTGGAATGGTTGCCCATGCCTTTGTCTTG
ATTATGTATGCAAGGGTGCGCCGGTCGATTATTGCCAGAACAATGGGCGA
GTGAGTGCTTGACGGGGGGGACTGACTTGTGGGAAGACCTTGCGTCGTTC
GACTTGCGTCGTTCTGCCACCGCTTCAGTTGTAGTACACTCTCTATCAAC
GCTATGTGTGGCTGTAGGGTCGTGTGAAAACGAATGCATTCGCAAGAGGC
AAAACTGGACATGCAAAAGAGGCCGCCTCTCAGCGAGGCGATGACCTCCC
CTCCTTCTCATTCTCGACTCAGACACAAAAACCACGCATACAGCACAGAA
AGCAGCAGCAGCAGCAGCGGCAGCCGCAAGCATGATAGCGGCATCAAGCT
CGCGGTCATGCAGCAGAAGCCGTGGGAGAAGAAGAGTGTATTTTCATCTT
TTCCTCTTCCTCCTGCTGCTGCCCTATCTCGCCTCCTCTTTCCAGCATTC
GCTTCGACAAAGCCGGCAGTCCTCCACCACCTTCGGTCGTCTCGGCCTTC
ACAGCAGCAGAAGTAGAAGTAGTTCCATCGCCACATCCGCTTCTGTTACC
AGCCTGTCCCCAGTACAAGCAGTCACCCTCACTCAAGTTGAGATACGTCA
GGCGACCGTCAAGGACTTTCCTGCCATAGCTGAGTCACGCAAAGCCATCA
TTTTTGTGCCCAAACAAGGCGGGGGCAGTGGAGCCGGGGCCATCCGTCGC
GCCCTCGAGGAAGCTACATCTAAAGAAGAACGTGAAATTCTCTCCAAAAT
TCCCTATTTAGTTACAAAGCAGGCAATTGCATTTATCGCGGTAGGTCGAC
CATGTCTTAGCCCAGGGGGCGCGCGTGGCAGCAGCAGCAGCAGCAGACCC
CGGGTGGTGGGGACGGTGGATGTTTTTGAACGAGAGGCGGAAGGCTCGAC
ATTACCTCGAAGATTATTTCTTAAGAATATGATTGTGGACGAGGCCTTTC
GAAGGCAGGGGTTCGCACGTCGTCTCCTCTCGAGGGTTGAGGAACATGCA
AGGAACATAGGGATCAAAGAAGTGTATTTGGAAGTGCTTGCAAATAATGA
GGGGGCCATACAGCTGTATACACAGCAAGGATTCCAGTTCACATCGAATC
CTATGGAGTTGCTGTGGCGGGTGTTGGGGATTGGGAGAGTTACGATGGTG
AAGAAGTTGTGAGCGAGGGAGAGAGGGGGAAGAAAAAGGGAATTATGGAT
CCCCATGTAAATACGTAGCTGAATAACAGACACAATGTGATGGAAAGCGG
CAGCAACGGTAGTCGTCATGAACTCGGTCCATAGGCGAAAACAACGAGAT
TAATAGATGGATGAAAAAAAAAGGGACAACAAACGATTTGGAGTAAGTCG
CAGCACGACTTGCCTATATGCGTGTGTGCAAGGTGTGTTTTTAAAAGGGG
CCTCTCTGAATAGAGATATCTAATTGCCTTGGCCACCGGACGACACAATA
TTATGTTGTCAGTCGTAAATCATCCGGTCCTGCGATTATGGATGCCATCA
TACTACTAGCCGTCGTAGTCGCCGTAGTCGTTGTAGATCGAGATGATGCA
CGATTATTAGTCGTCATAGCCGTCCATTCCTACGATTATGCACGACTTTA
AGTCGTCATAGCTGTTGCGACGACTATTTGTTGTGTACGCACGTACGTAG
AGGTTTGTTGTGTGTACTACAGTAGTCGTAGGTCGACGAAGCAACGACTG
TAACGAGAGGACGACTCGTCTCTCATCATCGATATATGCACGGTTTGCGA
CGACTACTATTCGTACCTGTTTTTTGAATTGTTGAACCCCTCTCGCTCTG
TCGTTTTGGTATGTGTGTGTGCACCAGCACAACTGTGCACCACACCAAGC
TTTTCGCTGTAAACTCACCCGTGTCCTCCCTCCCTTCCGGACCTGATGGC
CCTCCCACATCACACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCG
ATTCGTCGCGATGGCCAGCC back to topCoding sequence (CDS) from alignment at scaffold_8:344920..349089- >mRNA_3901 ID=mRNA_3901|Name=jgi.p|Nanoce1779_2|585767|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_8:344920..349089- (Nannochloropsis oceanica)
ATGATAGCGGCATCAAGCTCGCGGTCATGCAGCAGAAGCCGTGGGAGAAG
AAGAGTGTATTTTCATCTTTTCCTCTTCCTCCTGCTGCTGCCCTATCTCG
CCTCCTCTTTCCAGCATTCGCTTCGACAAAGCCGGCAGTCCTCCACCACC
TTCGGTCGTCTCGGCCTTCACAGCAGCAGAAGTAGAAGTAGTTCCATCGC
CACATCCGCTTCTGTTACCAGCCTGTCCCCAGTACAAGCAGTCACCCTCA
CTCAAGTTGAGATACGTCAGGCGACCGTCAAGGACTTTCCTGCCATAGCT
GAGTCACGCAAAGCCATCATTTTTGTGCCCAAACAAGGCGGGGGCAGTGG
AGCCGGGGCCATCCGTCGCGCCCTCGAGGAAGCTACATCTAAAGAAGAAC
GTGAAATTCTCTCCAAAATTCCCTATTTAGTTACAAAGCAGGCAATTGCA
TTTATCGCGGTAGGTCGACCATGTCTTAGCCCAGGGGGCGCGCGTGGCAG
CAGCAGCAGCAGCAGACCCCGGGTGGTGGGGACGGTGGATGTTTTTGAAC
GAGAGGCGGAAGGCTCGACATTACCTCGAAGATTATTTCTTAAGAATATG
ATTGTGGACGAGGCCTTTCGAAGGCAGGGGTTCGCACGTCGTCTCCTCTC
GAGGGTTGAGGAACATGCAAGGAACATAGGGATCAAAGAAGTGTATTTGG
AAGTGCTTGCAAATAATGAGGGGGCCATACAGCTGTATACACAGCAAGGA
TTCCAGTTCACATCGAATCCTATGGAGTTGCTGTGGCGGGTGTTGGGGAT
TGGGAGAGTTACGATGGTGAAGAAGTTGTGA back to top
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