jgi.p|Nanoce1779_2|585762, mRNA_3900 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585762
Unique Name	mRNA_3900
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1656
Alignment location	scaffold_8:342974..344976 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585848
Track	FilteredModels2
ProteinId	585762

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:342974..344976 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585762	gene_3900	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585762	mRNA_3900-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3900	CDS_3900	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:342974..344976-
coding sequence from alignment at scaffold_8:342974..344976-

mRNA sequence

>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Nanoce1779_2|585762|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAA
CAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAA
GGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAA
GGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGC
CCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGG
CCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCA
GTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAA
AGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAAC
ACACGCCCATCATTTTGATGCAAGGGATGATAAAAGGCACCCGCCAAGAA
ATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTTTGATGCC
TTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGGGGGGGGG
GGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGAAGTGCTT
CACCGCTTTTACCCTTGGCTGGAGAATTGCCATGTGATATTCCTGGATCC
TATATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGAC
TCAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAG
GGGGTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGA
GCACGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAG
GATACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAG
GAGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGC
AGTGGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGG
ACCAAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGGAAAGGAGGGCG
TAGAGGAGAGGGAGAGAAGGAGAAGCCGGGGGAAAAAAAGGAGTGGGGGA
AGAAGAAGGTAGTACGACATGGGGCAAGCGTAGGGGAGGGAAAGTCATTC
ACTATGAACCAACGGATTCAAATCAAAGGGGAGGGAAGTCGATGGTGCCT
GTGAGATAGCAAAGGGGGGAATATGGCTATCATTACCATGCAGACATATT
AAATTGTCCCGCTTTATGTATACGAAGATGGAATTTGATTTTTTTACTTG
CATCCTTCCAATTTGATGTGTTGACGAGCCAGTGTATGGAGTGAAGAAAA
AAGAAGGATTACGGGAGCACGCGGTGTTGGCAAGCTTCACACAGGCCCGT
CGGTCCTTATCTTGTGTAGGGAAATGCATGGTCGAAGCCACGATCAACTC
CAGGTGACACTAAAAAAAAGACAGGAAAATTGTGGAGGCCGCCTATTCGG
TATCCCTCACTCTTTCAGACGCGTCCCTTCGGTCCAGGGATGGATATAAG
TGTAGATAAGGATAAACATTAAATAAAAATAACAAAAGCAATGGTTGGTA
AGAAAA

protein sequence of jgi.p|Nanoce1779_2|585762

>mRNA_3900-protein ID=mRNA_3900-protein|Name=jgi.p|Nanoce1779_2|585762|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MASPFDTATAFPPSPSTNNDADDAGDSKTATATPRADNTATIATNIAALT
EGQAKLAAMQARWPSVDARMLSSYLKYAKGNLGEAMGRYEEFLAWRTALG
PVGVTSIEQNLRADGTGKGPFMITLEYDEEERGKHTPIILMQGMIKGTRQ
EMTNQVVYAAERAGALMPCDGPARVKFLVNTRGGGFRVPDADYRAVVFEV
LHRFYPWLENCHVIFLDPIYVVRIGLWGMGKVFGLKWKEQFKVASREGWP
EGVDDEDIRTYVRVTKEEHGIGWEKDGSLKFDMEGYIERRGREEAKEKEE
EEERWRKAELLEGEKEQAVASAAAQSANMMALQMDQGAGLLGLGLS*

mRNA from alignment at scaffold_8:342974..344976-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Nanoce1779_2|585762|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_8:342974..344976- (Nannochloropsis oceanica)
ACAGGGATCGCCAATCCGCTCACCAGAATCACTCGCGATTCGTCGCGATG
GCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAA
CAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAA
GGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAA
GGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGC
CCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGG
CCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCA
GTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAA
AGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAAC
ACACGCCCATCATTTTGATGCAAGGGATGATAAAGTAAGAAGGAAGGAGA
GTAGTGAAATATGGCGAAGGTGGAAACTATCGCTACCACTCAAGCATGAA
CGAAAGGATGACCTATAGCCGAATCACCTCCTTTACCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCGCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCGCTCTCTCCCTCCCTCCCTCCCTCCCTAAAAATCACAGAGGCACCCG
CCAAGAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTT
TGATGCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGG
GGGGGGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGA
AGTGCTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATGTAGGTTCTT
TTTCATTTAGTTCGTTCATCTTTGTCTAATATATCGTCAAAATCAACATT
TCGACGCATGCCCACCAACCATACCCTCACTCCCATCTTTTCCGCCCTCC
GCCCTTCTTTTACCCGCCGCCTTCCATTAGGTGATATTCCTGGATCCTAT
ATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGACTCA
AGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAGGGG
GTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGAGCA
CGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAGGAT
ACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAGGAG
GAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGCAGT
GGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGGACC
AAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGGAAAGGAGGGCGTAG
AGGAGAGGGAGAGAAGGAGAAGCCGGGGGAAAAAAAGGAGTGGGGGAAGA
AGAAGGTAGTACGACATGGGGCAAGCGTAGGGGAGGGAAAGTCATTCACT
ATGAACCAACGGATTCAAATCAAAGGGGAGGGAAGTCGATGGTGCCTGTG
AGATAGCAAAGGGGGGAATATGGCTATCATTACCATGCAGACATATTAAA
TTGTCCCGCTTTATGTATACGAAGATGGAATTTGATTTTTTTACTTGCAT
CCTTCCAATTTGATGTGTTGACGAGCCAGTGTATGGAGTGAAGAAAAAAG
AAGGATTACGGGAGCACGCGGTGTTGGCAAGCTTCACACAGGCCCGTCGG
TCCTTATCTTGTGTAGGGAAATGCATGGTCGAAGCCACGATCAACTCCAG
GTGACACTAAAAAAAAGACAGGAAAATTGTGGAGGCCGCCTATTCGGTAT
CCCTCACTCTTTCAGACGCGTCCCTTCGGTCCAGGGATGGATATAAGTGT
AGATAAGGATAAACATTAAATAAAAATAACAAAAGCAATGGTTGGTAAGA
AAA

Coding sequence (CDS) from alignment at scaffold_8:342974..344976-

>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Nanoce1779_2|585762|organism=Nannochloropsis oceanica|type=CDS|length=3123bp|location=Sequence derived from alignment at scaffold_8:342974..344976- (Nannochloropsis oceanica)
GTGATATTCCTGGATCCTATATATGTGGTCAGAATCGGGTTATGGGGAAT
GGGGAAGGTGTTTGGACTCAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGA
GGGAGGGCTGGCCGGAGGGGGTGGACGATGAAGATATCCGGACATATGTG
CGGGTGACGAAGGAGGAGCACGGCATTGGATGGGAGAAAGATGGCAGCTT
GAAATTTGATATGGAAGGATACATTGAGAGAAGGGGGAGGGAGGAAGCAA
AGGAAAAAGAGGAAGAGGAGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAG
GGGGAAAAGGAGCAGGCAGTGGCAAGTGCGGCGGCTCAGAGTGCGAACAT
GATGGCACTGCAAATGGACCAAGGGGCGGGGCTCTTGGGACTTGGATTGT
CGTAGAGGCACCCGCCAAGAAATGACGAATCAAGTCGTCTACGCCGCCGA
GCGTGCCGGAGCTTTGATGCCTTGCGACGGTCCCGCGCGCGTCAAATTTC
TGGTGAACACCCGGGGGGGGGGGTTCCGTGTCCCAGACGCTGATTATCGA
GCCGTAGTCTTTGAAGTGCTTCACCGCTTTTACCCTTGGCTGGAGAATTG
CCATATGGCCAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCA
GCACTAACAACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCC
ACCCCAAGGGCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCT
TACTGAAGGCCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCG
TGGACGCCCGGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTG
GGGGAGGCCATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTT
GGGACCAGTGGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGA
CGGGAAAAGGCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGG
GGAAAACACACGCCCATCATTTTGATGCAAGGGATGATAAAGTGATATTC
CTGGATCCTATATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGT
GTTTGGACTCAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCT
GGCCGGAGGGGGTGGACGATGAAGATATCCGGACATATGTGCGGGTGACG
AAGGAGGAGCACGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGA
TATGGAAGGATACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAG
AGGAAGAGGAGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAG
GAGCAGGCAGTGGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACT
GCAAATGGACCAAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGAGGC
ACCCGCCAAGAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGG
AGCTTTGATGCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACA
CCCGGGGGGGGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTC
TTTGAAGTGCTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATATGGC
CAGCCCCTTTGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAACA
ACGACGCCGATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAAGG
GCGGACAACACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAAGG
CCAGGCGAAGTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGCCC
GGATGCTTTCTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGGCC
ATGGGACGCTACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCAGT
GGGGGTCACGTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAAAG
GCCCGTTCATGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAACAC
ACGCCCATCATTTTGATGCAAGGGATGATAAAGTGATATTCCTGGATCCT
ATATATGTGGTCAGAATCGGGTTATGGGGAATGGGGAAGGTGTTTGGACT
CAAGTGGAAGGAGCAGTTTAAGGTGGCCTCGAGGGAGGGCTGGCCGGAGG
GGGTGGACGATGAAGATATCCGGACATATGTGCGGGTGACGAAGGAGGAG
CACGGCATTGGATGGGAGAAAGATGGCAGCTTGAAATTTGATATGGAAGG
ATACATTGAGAGAAGGGGGAGGGAGGAAGCAAAGGAAAAAGAGGAAGAGG
AGGAAAGGTGGAGGAAGGCGGAGCTGTTGGAGGGGGAAAAGGAGCAGGCA
GTGGCAAGTGCGGCGGCTCAGAGTGCGAACATGATGGCACTGCAAATGGA
CCAAGGGGCGGGGCTCTTGGGACTTGGATTGTCGTAGAGGCACCCGCCAA
GAAATGACGAATCAAGTCGTCTACGCCGCCGAGCGTGCCGGAGCTTTGAT
GCCTTGCGACGGTCCCGCGCGCGTCAAATTTCTGGTGAACACCCGGGGGG
GGGGGTTCCGTGTCCCAGACGCTGATTATCGAGCCGTAGTCTTTGAAGTG
CTTCACCGCTTTTACCCTTGGCTGGAGAATTGCCATATGGCCAGCCCCTT
TGACACTGCCACCGCTTTCCCCCCATCTCCCAGCACTAACAACGACGCCG
ATGACGCTGGGGACAGCAAAACCGCCACGGCCACCCCAAGGGCGGACAAC
ACAGCCACCATCGCGACGAATATTGCGGCCCTTACTGAAGGCCAGGCGAA
GTTAGCGGCAATGCAAGCCCGCTGGCCCTCCGTGGACGCCCGGATGCTTT
CTTCTTACCTCAAGTACGCAAAAGGCAACCTGGGGGAGGCCATGGGACGC
TACGAGGAGTTTTTGGCCTGGCGCACAGCCTTGGGACCAGTGGGGGTCAC
GTCGATTGAGCAGAACCTGCGGGCAGATGGGACGGGAAAAGGCCCGTTCA
TGATCACATTGGAGTACGATGAGGAGGAGAGGGGAAAACACACGCCCATC
ATTTTGATGCAAGGGATGATAAA

Synonyms

Publications