jgi.p|Nanoce1779_2|577190, mRNA_390 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577190
Unique NamemRNA_390
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length967
Alignment locationscaffold_3:973054..974503 +

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Properties
Property NameValue
TranscriptId577276
TrackFilteredModels2
ProteinId577190
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:973054..974503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577190gene_390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577190mRNA_390-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_390CDS_390Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_390 ID=mRNA_390|Name=jgi.p|Nanoce1779_2|577190|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
CAGACAGGCAAGCCTCCCCCTAAGCCTCTCCATCATCTTTCTTTACGTCC
TGCCGTCGCACCATTAGCTATCCTAAAGTCCTGAGCTATCCCTTGTTGAA
AATAAGAAGCCATGTCCATGTACGTTAGGATCAAGCGAAAGCAACAAACC
ATCTTCCTGCGCGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACA
GATCGGCGAAATTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGAC
CAGACAAGACAAGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGAC
ATCAAGTCAGATTCCATCTTGTACATGGTCTTCAGGAATCCAGAGGGGGG
CGGTTGGGAGGAAGTGGATACGATTACACCAGTGACAGGCGGGGAGATGA
AGGACTGAGTGATGGTGCGAGGTAGCATGTAAAAATAGTGACGAATTTCC
AACTCTCGCGGAATACAAACACGTATATAAATGTGCAAGGTGTTTACTCC
ATCTAGCGAGGTGACAAAGCATAGTCGAATTAAAAAAGGCTAGGGGGGGA
AAATGGCGTGAGTGGGACGGGGTGTTGGAAGGTTGAAACTGTCATAAGCA
GACGAAAATTCTCGTGGCACTAAGTGACAAGCTGAGGGCTGGGGCGCATT
TAAGTCTTCCAAGCAAAGTTGCCCAGATGAGGAAGGGCTCTGTAGCTTGC
CTTCAGATAAAAAAGGGGGGCGAAGGGTAAGAAGCGACTCTACGACTGCG
ACTCTACGACAGGGAGGTTATTATATATATCTTTCAATTTCAATGCCACC
ACCACCACGCACAAGCATGAAAATATACAATACAGAAATGAATGAGAATA
ACCATCCGGACCCAAATGTGAGTGCTTCGGACGGACGCTTTATTTTCTGG
CGCTCGACCTCGAGTGCTCCTTTCCGAGCTGCTGCACGTTTGATGGCACA
TTTCATCACATCGTCAT
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protein sequence of jgi.p|Nanoce1779_2|577190

>mRNA_390-protein ID=mRNA_390-protein|Name=jgi.p|Nanoce1779_2|577190|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKT
RDMSDSASLGQQDIKSDSILYMVFRNPEGGGWEEVDTITPVTGGEMKD*
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mRNA from alignment at scaffold_3:973054..974503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_390 ID=mRNA_390|Name=jgi.p|Nanoce1779_2|577190|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_3:973054..974503+ (Nannochloropsis oceanica)
CAGACAGGCAAGCCTCCCCCTAAGCCTCTCCATCATCTTTCTTTACGTCC
TGCCGTCGCACCATTAGCTATCCTAAAGTCCTGAGCTATCCCTTGTTGAA
AATAAGAAGCCATGTCCATGTACGTACCAGGTGTACCCCCCATTGCAATA
TCTCCTTGTCTCATTGCCTCGATCCCTTGCCTACTTCTCCCCCCCATTCC
CCCACCCCGCTAGGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTC
CTGCGCGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGG
CGAAATTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACA
AGGTGCGTCGCGTGTTGCTTGACGACGAAAGGGAAGGGAAGTCAAGGGAC
TGCTGATAGAGTGATGCTTGATAGAGTGATGTGATGCTTGTGCACGCCCG
GATCTGAAAGAAATTGAAATCATGACTCATATTTTTGCGTACATCCTTTG
AATAGCAGACAAGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGAC
ATCAAGTCAGATTCCATCTTGTACATGGTCTTCAGGAATCCAGGTAAGCA
ACGTGGAGGTTGAGAAGGCTCGGGCAGATAGTGGGGGGGAGGCTTTAAGG
ATGGAACATATCATAGATAGTGTCGGAGAAGCGTACGGCAATGAAGAGGG
CACGGGTGTCGTACGTGTCCCCGTGCGGCAGTGTACCCCAATGGCATGAA
AGGTGCATACAGACACTCTAAATGTTTTCGTCTAAATCACTTCTACAATC
CAAACCCATTTAAAACCAAACCATAGAGGGGGGCGGTTGGGAGGAAGTGG
ATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAGTGATGGTG
CGAGGTAGCATGTAAAAATAGTGACGAATTTCCAACTCTCGCGGAATACA
AACACGTATATAAATGTGCAAGGTGTTTACTCCATCTAGCGAGGTGACAA
AGCATAGTCGAATTAAAAAAGGCTAGGGGGGGAAAATGGCGTGAGTGGGA
CGGGGTGTTGGAAGGTTGAAACTGTCATAAGCAGACGAAAATTCTCGTGG
CACTAAGTGACAAGCTGAGGGCTGGGGCGCATTTAAGTCTTCCAAGCAAA
GTTGCCCAGATGAGGAAGGGCTCTGTAGCTTGCCTTCAGATAAAAAAGGG
GGGCGAAGGGTAAGAAGCGACTCTACGACTGCGACTCTACGACAGGGAGG
TTATTATATATATCTTTCAATTTCAATGCCACCACCACCACGCACAAGCA
TGAAAATATACAATACAGAAATGAATGAGAATAACCATCCGGACCCAAAT
GTGAGTGCTTCGGACGGACGCTTTATTTTCTGGCGCTCGACCTCGAGTGC
TCCTTTCCGAGCTGCTGCACGTTTGATGGCACATTTCATCACATCGTCAT
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Coding sequence (CDS) from alignment at scaffold_3:973054..974503+

>mRNA_390 ID=mRNA_390|Name=jgi.p|Nanoce1779_2|577190|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_3:973054..974503+ (Nannochloropsis oceanica)
ATGTCCATGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTCCTGCG
CGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGGCGAAA
TTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACAAGACA
AGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGACATCAAGTCAGA
TTCCATCTTGTACATGGTCTTCAGGAATCCAGAGGGGGGCGGTTGGGAGG
AAGTGGATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAATG
TCCATGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTCCTGCGCGC
GGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGGCGAAATTG
TGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACAAGACAAGG
GATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGACATCAAGTCAGATTC
CATCTTGTACATGGTCTTCAGGAATCCAGAGGGGGGCGGTTGGGAGGAAG
TGGATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAATGTCC
ATGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTCCTGCGCGCGGA
ACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGGCGAAATTGTGG
GGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACAAGACAAGGGAT
ATGTCAGACTCGGCCTCCTTAGGGCAGCAGGACATCAAGTCAGATTCCAT
CTTGTACATGGTCTTCAGGAATCCAGAGGGGGGCGGTTGGGAGGAAGTGG
ATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAATGTCCATG
TACGTTAGGATCAAGCGAAAGCAACAAACCATCTTCCTGCGCGCGGAACA
GAGAGAGACCGTGCAAGATATCAAGACACAGATCGGCGAAATTGTGGGGC
AAAACCCGGCGGACATCCGCTTGTATGGACCAGACAAGACAAGGGATATG
TCAGACTCGGCCTCCTTAGGGCAGCAGGACATCAAGTCAGATTCCATCTT
GTACATGGTCTTCAGGAATCCAGAGGGGGGCGGTTGGGAGGAAGTGGATA
CGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGA
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Synonyms
Publications