jgi.p|Nanoce1779_2|228624, mRNA_39 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|228624
Unique Name	mRNA_39
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2229
Alignment location	scaffold_3:110902..113130 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	228710
Track	FilteredModels2
ProteinId	228624

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:110902..113130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228624	gene_39	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228624	mRNA_39-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_39	CDS_39	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:110902..113130+
coding sequence from alignment at scaffold_3:110902..113130+

mRNA sequence

>mRNA_39 ID=mRNA_39|Name=jgi.p|Nanoce1779_2|228624|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
AGGCCGTGGAAGTGCTGGCCAAGGCGAAGATGACGAGGACCGGAAGTAGG
AGTTTCATGTTCGTTTTGTTTCTGTTGAAAGGGAAAAAGGAAGGATGGTG
TGTGAGTTCGGGGGGAGCGTGTGGGTGGAAGGGTGGAAGGGTGTGGAAAT
ACGTGCACAGGAGGTTTTTCTTTGCCTCTTGATGCGTGCAGGTCTCCCGC
GCCTTCCTACCGCACAACCATTGTTCTTTTTACATGCCACTATGTACATC
TACAGGGGCCAGGGCCGTTGCCTTTGTCGGTCTGCCATGTGGTGGACCCT
TGAACTTGATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGC
TCCCTAGGGGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCA
GCAGGATCATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACC
TGTCCCGTCTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCC
CTCCGCCTCGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAA
CGCCGGCCCCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCT
GTCGCATTCACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAG
TTTGGCATTCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCT
CCACCCCTCCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCA
GGTCCATGTTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAA
AGCGAAGAGAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCT
GCCTGTCTATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCT
CCTCGCCGTCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCC
CTCTCACTCACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTA
CGGTGTCAGTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGG
CCGTTTTCTGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGG
AAGGAGGAATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTT
TGTGGAAGGCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGC
TGGCACGTAAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTA
CCAGTGCTTCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACAT
GGGGTCGTGCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGAT
TGATTGAGGGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGA
GGAGGAGGAGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCC
TGAGAAAGGGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGC
TGTTGCTGCACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTG
GAGAAAGACGAGGAATGGGGGGTTGATGAGCAGCAGCAGCGGCAGCAGCA
GCAGCAGCAGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTG
AAGAATACGTTCCTCACTCCTGGCTTTTTCCTCGTTGTCACCTCGTGCTG
CATCACGGAGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGG
TGGAGGAGGAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGG
GTTCCTCAACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGA
ACGTGTCGCCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGC
AGGACGGAGGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAG
CGAGGGAGGGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTT
GAGGGAGGAGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGA
TGAGCAGGAGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAGGAATGACAGTCATGTGACCGAAGGGA
CATTCCAATCAATTGCAAAGGAGTTGTAA

protein sequence of jgi.p|Nanoce1779_2|228624

>mRNA_39-protein ID=mRNA_39-protein|Name=jgi.p|Nanoce1779_2|228624|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MPLCTSTGARAVAFVGLPCGGPLNLMASTSNSIVFLALGSLGDLLPLLAI
ARRIAQQDHDQLDVVVVTHAQYLSRLHALLHQSSNPLSPLRLVLRGIPTP
PLPLPNAGPSHVQHELDACLAACRIHTPIALLAFNLVAKFGIHLAELLSI
PSYVLLHPSLAPPSPEPSLAYVRSMLGANLFKMMLRVEESEERFKEMTHW
MLSLFLPVYHTFRERHGLCPCISSPSFQPSSSSSSSSSSLSLTARLALTG
GTPLLYGVSEFFFPKPGYWPKAAVFCGAWRWEEEDVREGKEEWKEKWMPS
EALQRFVEGEEGKEDTEATTCALARKGGEGEGKEGAMALPVLPASLPRPP
LICLDMGSCVEVGLRTRSEWEGLIEGVVEALRRAFPGGGGGGGREGGRGG
GSPDNPEKGEKRTGYGSGGFRLLLLHFPPSSSLGAEVALEKDEEWGVDEQ
QQRQQQQQQQKLTCDDILRLPVEEYVPHSWLFPRCHLVLHHGGLGSTMAC
IGARGGGGGGGGGKEEGGEGGGGGGGEGGGEGGEGGGRGVPQLVLPCTEE
QRVWGERVAYLGIGAVMGREGEQDGGIEEAVYQALKGLERGREICLKTIR
RYAGWLREEDGVGRAVEVLMEEMSRRRKKRRKEEEEEEEEEEEEGEEE*

mRNA from alignment at scaffold_3:110902..113130+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_39 ID=mRNA_39|Name=jgi.p|Nanoce1779_2|228624|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_3:110902..113130+ (Nannochloropsis oceanica)
AGGCCGTGGAAGTGCTGGCCAAGGCGAAGATGACGAGGACCGGAAGTAGG
AGTTTCATGTTCGTTTTGTTTCTGTTGAAAGGGAAAAAGGAAGGATGGTG
TGTGAGTTCGGGGGGAGCGTGTGGGTGGAAGGGTGGAAGGGTGTGGAAAT
ACGTGCACAGGAGGTTTTTCTTTGCCTCTTGATGCGTGCAGGTCTCCCGC
GCCTTCCTACCGCACAACCATTGTTCTTTTTACATGCCACTATGTACATC
TACAGGGGCCAGGGCCGTTGCCTTTGTCGGTCTGCCATGTGGTGGACCCT
TGAACTTGATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGC
TCCCTAGGGGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCA
GCAGGATCATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACC
TGTCCCGTCTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCC
CTCCGCCTCGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAA
CGCCGGCCCCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCT
GTCGCATTCACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAG
TTTGGCATTCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCT
CCACCCCTCCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCA
GGTCCATGTTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAA
AGCGAAGAGAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCT
GCCTGTCTATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCT
CCTCGCCGTCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCC
CTCTCACTCACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTA
CGGTGTCAGTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGG
CCGTTTTCTGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGG
AAGGAGGAATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTT
TGTGGAAGGCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGC
TGGCACGTAAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTA
CCAGTGCTTCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACAT
GGGGTCGTGCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGAT
TGATTGAGGGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGA
GGAGGAGGAGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCC
TGAGAAAGGGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGC
TGTTGCTGCACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTG
GAGAAAGACGAGGAATGGGGGGTTGATGAGCAGCAGCAGCGGCAGCAGCA
GCAGCAGCAGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTG
AAGAATACGTTCCTCACTCCTGGCTTTTTCCTCGTTGTCACCTCGTGCTG
CATCACGGAGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGG
TGGAGGAGGAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGG
GTTCCTCAACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGA
ACGTGTCGCCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGC
AGGACGGAGGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAG
CGAGGGAGGGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTT
GAGGGAGGAGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGA
TGAGCAGGAGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAGGAATGACAGTCATGTGACCGAAGGGA
CATTCCAATCAATTGCAAAGGAGTTGTAA

Coding sequence (CDS) from alignment at scaffold_3:110902..113130+

>mRNA_39 ID=mRNA_39|Name=jgi.p|Nanoce1779_2|228624|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at scaffold_3:110902..113130+ (Nannochloropsis oceanica)
ATGCCACTATGTACATCTACAGGGGCCAGGGCCGTTGCCTTTGTCGGTCT
GCCATGTGGTGGACCCTTGAACTTGATGGCGTCCACTTCAAACAGCATCG
TCTTCCTTGCCCTTGGCTCCCTAGGGGACCTCTTGCCGCTCCTTGCCATA
GCCCGGCGTATCGCGCAGCAGGATCATGACCAGCTCGATGTGGTCGTCGT
CACCCACGCTCAATACCTGTCCCGTCTCCATGCGCTCCTCCACCAATCTT
CCAATCCTCTTTCCCCCCTCCGCCTCGTCCTCCGAGGCATCCCCACACCG
CCCTTACCCCTACCAAACGCCGGCCCCTCCCACGTTCAACACGAACTCGA
CGCCTGCCTCGCCGCCTGTCGCATTCACACCCCTATTGCCCTCCTCGCTT
TTAATCTCGTCGCCAAGTTTGGCATTCACCTCGCCGAGCTCCTCTCTATC
CCTTCCTACGTCCTCCTCCACCCCTCCCTCGCCCCTCCCTCGCCCGAGCC
CTCCCTCGCATATGTCAGGTCCATGTTGGGCGCAAATTTATTCAAGATGA
TGCTAAGGGTAGAGGAAAGCGAAGAGAGATTCAAGGAAATGACGCACTGG
ATGCTCAGCCTCTTCCTGCCTGTCTATCACACCTTTCGAGAGCGGCACGG
CCTGTGTCCCTGCATCTCCTCGCCGTCCTTCCAGCCCTCCTCCTCCTCCT
CTTCCTCCTCCTCTTCCCTCTCACTCACTGCTCGTCTAGCCCTGACGGGT
GGCACGCCCCTCCTGTACGGTGTCAGTGAATTCTTCTTCCCCAAACCCGG
CTACTGGCCAAAGGCGGCCGTTTTCTGTGGCGCCTGGAGGTGGGAGGAGG
AGGACGTGAGGGAGGGGAAGGAGGAATGGAAGGAGAAATGGATGCCTTCG
GAGGCTCTGCAGCGGTTTGTGGAAGGCGAGGAAGGGAAGGAGGACACAGA
GGCGACGACATGTGCGCTGGCACGTAAAGGAGGAGAAGGAGAAGGAAAAG
AGGGAGCAATGGCACTACCAGTGCTTCCTGCCTCCCTTCCCCGTCCCCCA
TTGATCTGTCTGGACATGGGGTCGTGCGTGGAGGTTGGACTTCGGACACG
GAGTGAATGGGAGGGATTGATTGAGGGTGTGGTGGAGGCGCTGCGACGCG
CTTTCCCTGGAGGGGGAGGAGGAGGAGGGAGAGAGGGAGGGAGGGGGGGA
GGATCACCTGACAACCCTGAGAAAGGGGAGAAGAGGACAGGATATGGCAG
CGGGGGCTTTCGTTTGCTGTTGCTGCACTTCCCTCCCTCCTCTTCACTGG
GGGCGGAGGTGGCGTTGGAGAAAGACGAGGAATGGGGGGTTGATGAGCAG
CAGCAGCGGCAGCAGCAGCAGCAGCAGCAGAAGCTGACGTGCGATGATAT
TCTGCGTCTTCCAGTTGAAGAATACGTTCCTCACTCCTGGCTTTTTCCTC
GTTGTCACCTCGTGCTGCATCACGGAGGGTTGGGCTCAACGATGGCGTGC
ATAGGCGCAAGAGGAGGTGGAGGAGGAGGAGGAGGAGGAAAAGAGGAAGG
AGGAGAAGGAGGAGGAGGAGGAGGAGGCGAAGGAGGAGGCGAGGGAGGAG
AAGGAGGAGGGAGGGGGGTTCCTCAACTGGTGCTGCCATGTACGGAGGAG
CAGCGTGTTTGGGGGGAACGTGTCGCCTATCTGGGCATAGGGGCAGTGAT
GGGGAGGGAGGGAGAGCAGGACGGAGGGATAGAGGAAGCGGTGTACCAGG
CGTTGAAGGGATTGGAGCGAGGGAGGGAGATCTGTCTGAAGACGATAAGG
CGGTATGCAGGGTGGTTGAGGGAGGAGGATGGGGTGGGAAGGGCAGTGGA
GGTGTTGATGGAAGAGATGAGCAGGAGGAGAAAGAAGAGGAGAAAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAATGA

Synonyms

Publications