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Properties
Property Name | Value |
TranscriptId | 554131 |
Track | FilteredModels2 |
ProteinId | 554045 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_8 | supercontig | scaffold_8:340877..342933 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp CAGCAACGTGTGTTGTTCACCCAGGCAGTAGCGGAAGGAGGGGTAGGAGT GGGAGAAGGGTGCAGCAGCAGCAGAAGCAGCAGCAGTTTAGAGGGATACT TGCTGGCAGCTCAATGTTTGGCTGCGTCAGATAGATGTGAAGAATGCTTA CTGCTGTTGGAGCAGGTGCTCCCTGCCTGGGAGGAGGAGTGGAGGGAGAA AGGGGGGAGGGAAGGCGCGGAGGAGCTGGAGGAGGAAGAGGACGGGGGAG AGGAGGGCGACCTGTCGTTTTATAGGCAGACTCGGCATGTGCAATGGTTG AAATCGGCGATTATCGTGGCGGGGGCCCGGCAGCAGGAACAGCTTGAAGG GGTAGGGAAGGGGAAAACAGGTGGAAGAGGAAAAGCCTCAGCACCACCAT TAGCACGATCACCTTCGCCACCAGCGTTCTCCTTGCCCTCTCCTCAAGCG CAAAGTGTCCTTACTACTCTAGCAGCCATGTGCTGCCTCCGAGCCCAACT TCATGAGGGGCAAGACAACCGCACAAGGGCCGCTGCCTGGTGCCGTCATG CCCTGCAATTTGATGTGTATTGTGTGGAGGCGCTTGAATTTTTGGTTGAC CGAAAGCTGATGTCCCAGGCGGAGGAGAGGAGATTGTTGAGGGAGGAAGG GAGGGAAGAAGGGGAGGTGGATAACGGGTGGTTGCGACTGGTGTACACAA CTCGACTGCTTTGTTTTTCTGACGGGCAGCTGTCGGTGGAGGAACAGCAC AGAGGAATTAGAGAGGCTTTCGCTGGGCTTGCTCAATTGGGGATGGGAAA GGATGCGGCGATACTAACGGCACAAGCTGAGATGGCGTATTACTATCAGC ATGACCCTCACACGGCCCATGCGTTGTGTAAGGAAATCCGTGTGCTGGAT CCATTTTATGAGCGGTGCCTGCCTGTCTACCTCTCTTCGCTGGTGGAACT CCGTTTAAAGACTGACTTGTATTATCTCGCGCATCGCTTGGTGGAGATTC AACCAAAAAGCGCGGTTGCTTGGTTTGCGGTTGGGTGTTACTACGTTGCG ATCCACAAGAACGAGGCGGCGCAGAGATATTTTCACAAGGCGACCAAATT GGACCATGCATTTGCCCCGGCCTGGTTGGGGTTCGGGAATGCCTTTGCGG CACAGGATGAGAGCGACCAAGCCATGTCTGCTTACCGGACTGCGAGCCGT TTGTTTCCGTCGTTACACTTCCCCTTGTTATACTCGGGGATGGAGTACCT GCGTACGAACAATCTGTCACTGGCCCTTCATTTCATCCAGGCTGCGCATG GGCTGAATCCAATGGATGCCCTGGTGCACAACGAATGGGGCGTGGTTCAT TTCAGACGGGGAAAGTACGCGGAAGCAGCAGAGCGGTTTCGCACCGTGTT GGCCCTGGCGGGAGGGGCGGGTTCAAGGAAGGGCTTGGGGAGGTGGGAAG GGACGGTGGTGAATTTGGCGCATTGCTGTCGGAAAGAGGGAAAGTTTCAA GAGGCCATTGAATGGTACGAGCTGGCTTTGGGCCTGGCCCCAAAGAGGGC GAGCACGTATGTGGCGTTGGCGTTCACGCATCAGTTGAGGGGGGAGTTAG ACAGAGCGATTGAGTACTACCATCGTGCGTTGGGATTTAAAAGTGGTGAT GCGTTTGCGGTGGCCATGTTATCGAGGGCTTTGGGGGATGCAATTTTGGT GGGAGAAAGAGGGGGAAAAGGGGGAGGTGTCGGGGCTTTGCCACCGCCGA CGGCGAGTTTAATTATGTCGGTGCCATTGCCGGAGGGGACGGGAGGAAGG GAGGGAGGAAAGGTGGAAAAGGGGGGGAGGAGGGTCAGTACGGGGAGTGA GATATATGAGGGGATGGATGAGGGGAGAGAGGTCGAGGGAGAGCAGGAGG AAGAGGAGGATACTTTGGATTTGTCGGGGTGATGAAAATGGCCAGGGGAA TAAGGGGAATGATAAAGAGTGAGAGAAGAATGAAAACG back to topprotein sequence of jgi.p|Nanoce1779_2|554045 >mRNA_3899-protein ID=mRNA_3899-protein|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp MCCLRAQLHEGQDNRTRAAAWCRHALQFDVYCVEALEFLVDRKLMSQAEE RRLLREEGREEGEVDNGWLRLVYTTRLLCFSDGQLSVEEQHRGIREAFAG LAQLGMGKDAAILTAQAEMAYYYQHDPHTAHALCKEIRVLDPFYERCLPV YLSSLVELRLKTDLYYLAHRLVEIQPKSAVAWFAVGCYYVAIHKNEAAQR YFHKATKLDHAFAPAWLGFGNAFAAQDESDQAMSAYRTASRLFPSLHFPL LYSGMEYLRTNNLSLALHFIQAAHGLNPMDALVHNEWGVVHFRRGKYAEA AERFRTVLALAGGAGSRKGLGRWEGTVVNLAHCCRKEGKFQEAIEWYELA LGLAPKRASTYVALAFTHQLRGELDRAIEYYHRALGFKSGDAFAVAMLSR ALGDAILVGERGGKGGGVGALPPPTASLIMSVPLPEGTGGREGGKVEKGG RRVSTGSEIYEGMDEGREVEGEQEEEEDTLDLSG* back to topmRNA from alignment at scaffold_8:340877..342933+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp|location=Sequence derived from alignment at scaffold_8:340877..342933+ (Nannochloropsis oceanica) CAGCAACGTGTGTTGTTCACCCAGGCAGTAGCGGAAGGAGGGGTAGGAGT
GGGAGAAGGGTGCAGCAGCAGCAGAAGCAGCAGCAGTTTAGAGGGATACT
TGCTGGCAGCTCAATGTTTGGCTGCGTCAGATAGATGTGAAGAATGCTTA
CTGCTGTTGGAGCAGGTGCTCCCTGCCTGGGAGGAGGAGTGGAGGGAGAA
AGGGGGGAGGGAAGGCGCGGAGGAGCTGGAGGAGGAAGAGGACGGGGGAG
AGGAGGGCGACCTGTCGTTTTATAGGCAGACTCGGCATGTGCAATGGTTG
AAATCGGCGATTATCGTGGCGGGGGCCCGGCAGCAGGAACAGCTTGAAGG
GGTAGGGAAGGGGAAAACAGGTGGAAGAGGAAAAGCCTCAGCACCACCAT
TAGCACGATCACCTTCGCCACCAGCGTTCTCCTTGCCCTCTCCTCAAGCG
CAAAGTGTCCTTACTACTCTAGCAGCCATGTGCTGCCTCCGAGCCCAACT
TCATGAGGGGCAAGACAACCGCACAAGGGCCGCTGCCTGGTGCCGTCATG
CCCTGCAATTTGATGTGTATTGTGTGGAGGCGCTTGAATTTTTGGTTGAC
CGAAAGCTGATGTCCCAGGCGGAGGAGAGGAGATTGTTGAGGGAGGAGTT
AGAGTTTTCTGAACGAGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGAAGGAGGGGAAGAGAGGGAGGGAAGAAGGGGAGGTGGATAACGGGTGG
TTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGACGGGCAGCT
GTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCGCTGGGCTTG
CTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCACAAGCTGAG
ATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGCGTTGTGTAA
GGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGCCTGTCTACC
TCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTATTATCTCGCG
CATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTGGTTTGCGGT
TGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGCAGAGATATT
TTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCCTGGTTGGGG
TTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGCCATGTCTGC
TTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCCCCTTGTTAT
ACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTGGCCCTTCAT
TTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCTGGTGCACAA
CGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGGAAGCAGCAG
AGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGTTCAAGGAAG
GGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCATTGCTGTCG
GAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGCTGGCTTTGG
GCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCGTTCACGCAT
CAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCATCGTGCGTT
GGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTATCGAGGGCTT
TGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGGGGAGGTGTC
GGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGTGCCATTGCC
GGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGGGGGGGAGGA
GGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAGGGGAGAGAG
GTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTTGTCGGGGTG
ATGAAAATGGCCAGGGGAATAAGGGGAATGATAAAGAGTGAGAGAAGAAT
GAAAACG back to topCoding sequence (CDS) from alignment at scaffold_8:340877..342933+ >mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_8:340877..342933+ (Nannochloropsis oceanica) ATGTGCTGCCTCCGAGCCCAACTTCATGAGGGGCAAGACAACCGCACAAG GGCCGCTGCCTGGTGCCGTCATGCCCTGCAATTTGATGTGTATTGTGTGG AGGCGCTTGAATTTTTGGTTGACCGAAAGCTGATGTCCCAGGCGGAGGAG AGGAGATTGTTGAGGGAGGAAGGGAGGGAAGAAGGGGAGGTGGATAACGG GTGGTTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGACGGGC AGCTGTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCGCTGGG CTTGCTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCACAAGC TGAGATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGCGTTGT GTAAGGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGCCTGTC TACCTCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTATTATCT CGCGCATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTGGTTTG CGGTTGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGCAGAGA TATTTTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCCTGGTT GGGGTTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGCCATGT CTGCTTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCCCCTTG TTATACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTGGCCCT TCATTTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCTGGTGC ACAACGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGGAAGCA GCAGAGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGTTCAAG GAAGGGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCATTGCT GTCGGAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGCTGGCT TTGGGCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCGTTCAC GCATCAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCATCGTG CGTTGGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTATCGAGG GCTTTGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGGGGAGG TGTCGGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGTGCCAT TGCCGGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGGGGGGG AGGAGGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAGGGGAG AGAGGTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTTGTCGG GGTGAATGTGCTGCCTCCGAGCCCAACTTCATGAGGGGCAAGACAACCGC ACAAGGGCCGCTGCCTGGTGCCGTCATGCCCTGCAATTTGATGTGTATTG TGTGGAGGCGCTTGAATTTTTGGTTGACCGAAAGCTGATGTCCCAGGCGG AGGAGAGGAGATTGTTGAGGGAGGAAGGGAGGGAAGAAGGGGAGGTGGAT AACGGGTGGTTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGA CGGGCAGCTGTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCG CTGGGCTTGCTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCA CAAGCTGAGATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGC GTTGTGTAAGGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGC CTGTCTACCTCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTAT TATCTCGCGCATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTG GTTTGCGGTTGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGC AGAGATATTTTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCC TGGTTGGGGTTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGC CATGTCTGCTTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCC CCTTGTTATACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTG GCCCTTCATTTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCT GGTGCACAACGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGG AAGCAGCAGAGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGT TCAAGGAAGGGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCA TTGCTGTCGGAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGC TGGCTTTGGGCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCG TTCACGCATCAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCA TCGTGCGTTGGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTAT CGAGGGCTTTGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGG GGAGGTGTCGGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGT GCCATTGCCGGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGG GGGGGAGGAGGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAG GGGAGAGAGGTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTT GTCGGGGTGA back to top
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