jgi.p|Nanoce1779_2|540533, mRNA_3898 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|540533
Unique NamemRNA_3898
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1628
Alignment locationscaffold_8:338514..340177 -

Link to JBrowse

Properties
Property NameValue
TranscriptId540619
TrackFilteredModels2
ProteinId540533
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:338514..340177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540533gene_3898Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540533mRNA_3898-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3898CDS_3898Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3898 ID=mRNA_3898|Name=jgi.p|Nanoce1779_2|540533|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp
GCGCTTGGTCGGGGTAAGTTGGAGCTGCCGCGACGGAGGACGTTGTCGGT
AGCGGTGAGAACTACTGCTGCTGGAGGATGGGGCCGACAACGACGTGGTG
AAAGAAGGGGCGGCTGTGTCTGTACGGTGTGCAGCGACACGTGGGATGGG
AGATTGGTCAGGTGAGTGTACAACACAGGCACGAAGGGCACAGAAGGCCT
CGCTGAGGTGAAGACGTTGGGTTGGCGATGATGCATGTGACAGCGCCTTA
TTCGTGCCTCTCGTGTCAGCGGTGCTGGCTATTGACTTCTACCGCTATCA
CAAAGGAGAAGTATGCATGAGAAAGGCAAGGCCGTGGTGGTGGTGTGGTA
GATGCAGCAAGACTCAAGGCACATTTCCACCTCCCCACCCAACACACAGG
CCTCTTAGTCTTGCTGCCGGGGGGCGACGTTGAGAGGACGCACCCGCTCG
CCTGGAACGAGTGACACAAGTCACAGCCGACTTTTCTCAAATCACAATGC
CCAACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGAAAAC
GCCAAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCGGGAC
ACTTCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACCTTGC
AACGTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTTGGGA
CTAGAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACCCGAC
AGCGTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGGGCTT
ACGCGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCCCGCT
TCCTTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCACAGC
GTATCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAAGTCC
TCGTCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCTCATT
CTCGAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAACTGCC
CCTCCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTATACCA
AAGGCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGATGGG
GAAGGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCACTCA
GAATTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGCCTGA
TGAGTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGATGAAG
AAGCTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTGATTA
TAAAGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGGAGAT
TTGTGAGGGGGGCGATGGTGGGGTATAGAACGAACGTGTTCAGAACAGTG
GGGTGGGAGGAGGTGGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAA
CGCGGGCAAGATTGTGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGG
GGTAGGTAGAGGAGGGGTAGGTCGGTCGTGTTCGAAATATAGCTGGGAAA
CATGTAAATGATTCTCATCGTTTTTGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|540533

>mRNA_3898-protein ID=mRNA_3898-protein|Name=jgi.p|Nanoce1779_2|540533|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPNKMQAVLVSTPGPPENAKLGFTSKPSCREKPGTLLVKVAYAALNRADT
LQRQGLYPPPPDASDILGLELSGIIVDIGPNVDPTAFKKGDRAMSLVTGG
AYAEYCLVDTATTMRLPASLPLCIAAAIPEAWLTAYQLLHFVGHFQPGQK
VLVHAGASSVGLAAIQLILEQGGIPFATASAGKLPLLHQMGVLPTHAIDY
TKGPNPYFAAEVLAATDGEGVHLVLCCVGASYFTQNLEVLAKEGRLVLYG
LMSGAMVPGDADLRVMMKKLLTVTATTLRGRNIDYKEKLVRSFWTGERKG
RFVRGAMVGYRTNVFRTVGWEEVGEAHAMMERNENAGKIVLAVDPTLDEA
EG*
back to top

mRNA from alignment at scaffold_8:338514..340177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3898 ID=mRNA_3898|Name=jgi.p|Nanoce1779_2|540533|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at scaffold_8:338514..340177- (Nannochloropsis oceanica)
GCGCTTGGTCGGGGTAAGTTGGAGCTGCCGCGACGGAGGACGTTGTCGGT
AGCGGTGAGAACTACTGCTGCTGGAGGATGGGGCCGACAACGACGTGGTG
AAAGAAGGGGCGGCTGTGTCTGTACGGTGTGCAGCGACACGTGGGATGGG
AGATTGGTCAGGTGAGTGTACAACACAGGCACGAAGGGCACAGAAGGCCT
CGCTGAGGTGAAGACGTTGGGTTGGCGATGATGCATGTGACAGCGCCTTA
TTCGTGCCTCTCGTGTCAGCGGTGCTGGCTATTGACTTCTACCGCTATCA
CAAAGGAGAAGTATGCATGAGAAAGGCAAGGCCGTGGTGGTGGTGTGGTA
GATGCAGCAAGACTCAAGGCACATTTCCACCTCCCCACCCAACACACAGG
CCTCTTAGTCTTGCTGCCGGGGGGCGACGTTGAGAGGACGCACCCGCTCG
CCTGGAACGAGTGACACAAGTCACAGCCGACTTTTCTCAAATCACAATGC
CCAACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGAAAAC
GCCAAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCGGGAC
ACTTCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACCTTGC
AACGTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTTGGGA
CTAGAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACCCGAC
AGCGTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGGGCTT
ACGCGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCCCGCT
TCCTTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCACAGC
GTATCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAAGTCC
TCGTCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCTCATT
CTCGAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAACTGCC
CCTCCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTATACCA
AAGGCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGATGGG
GAAGGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCACTCA
GAATTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGCCTGA
TGAGTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGATGAAG
AAGCTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTGATTA
TAAAGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGGAGAT
TTGTGAGGGGGGCGATGGTGGGTGGGAGGGAGGGAGGGAAGGAGTCTGGG
GGAGGAGGGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGGAGGT
GGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAGATTG
TGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGGGGTAGGTAGAGGAG
GGGTAGGTCGGTCGTGTTCGAAATATAGCTGGGAAACATGTAAATGATTC
TCATCGTTTTTGCG
back to top

Coding sequence (CDS) from alignment at scaffold_8:338514..340177-

>mRNA_3898 ID=mRNA_3898|Name=jgi.p|Nanoce1779_2|540533|organism=Nannochloropsis oceanica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_8:338514..340177- (Nannochloropsis oceanica)
GGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGGAGGTGGGGGAG
GCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAGATTGTGTTGGC
CGTGGATCCGACGTTGGATGAGGCGGAGGGGTAGATGCCCAACAAGATGC
AAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGAAAACGCCAAGTTGGGT
TTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCGGGACACTTCTGGTCAA
GGTTGCATATGCAGCCCTAAATCGCGCAGACACCTTGCAACGTCAAGGTC
TCTACCCTCCACCACCCGATGCCTCAGACATCTTGGGACTAGAATTGAGT
GGCATCATCGTTGACATAGGGCCAAACGTAGACCCGACAGCGTTTAAAAA
AGGCGACCGAGCCATGTCCCTCGTAACTGGCGGGGCTTACGCGGAATATT
GCCTCGTGGATACCGCCACGACCATGCGGCTCCCCGCTTCCTTGCCCCTC
TGCATTGCAGCCGCAATTCCCGAAGCATGGCTCACAGCGTATCAACTCCT
GCATTTCGTTGGCCATTTTCAACCCGGTCAAAAAGTCCTCGTCCATGCAG
GTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCTCATTCTCGAGCAAGGT
GGTATCCCATTTGCCACCGCCTCTGCTGGCAAACTGCCCCTCCTCCACCA
GATGGGTGTCTTGCCCACCCATGCCATCGATTATACCAAAGGCCCAAACC
CCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGATGGGGAAGGGGTGCAT
CTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCACTCAGAATTTAGAAGT
GTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGCCTGATGAGTGGGGCGA
TGGTGCCTGGGGATGCGGATCTAAGAGTGATGATGAAGAAGCTTCTGACT
GTCACGGCCACGACATTAAGGGGGAGAAATATTGATTATAAAGAAAAATT
GGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGGAGATTTGTGAGGGGGG
CGATGGTGGGGTATAGAACGAACGTGTTCAGAACAGTGGGGTGGGAGGAG
GTGGGGGAGGCCCATGCGATGATGGAAAGGAATGAGAACGCGGGCAAGAT
TGTGTTGGCCGTGGATCCGACGTTGGATGAGGCGGAGGGGTAGATGCCCA
ACAAGATGCAAGCCGTTCTTGTTTCCACGCCAGGCCCCCCCGAAAACGCC
AAGTTGGGTTTCACTTCCAAACCGTCTTGTCGAGAAAAGCCCGGGACACT
TCTGGTCAAGGTTGCATATGCAGCCCTAAATCGCGCAGACACCTTGCAAC
GTCAAGGTCTCTACCCTCCACCACCCGATGCCTCAGACATCTTGGGACTA
GAATTGAGTGGCATCATCGTTGACATAGGGCCAAACGTAGACCCGACAGC
GTTTAAAAAAGGCGACCGAGCCATGTCCCTCGTAACTGGCGGGGCTTACG
CGGAATATTGCCTCGTGGATACCGCCACGACCATGCGGCTCCCCGCTTCC
TTGCCCCTCTGCATTGCAGCCGCAATTCCCGAAGCATGGCTCACAGCGTA
TCAACTCCTGCATTTCGTTGGCCATTTTCAACCCGGTCAAAAAGTCCTCG
TCCATGCAGGTGCATCCAGCGTCGGTCTCGCCGCAATCCAGCTCATTCTC
GAGCAAGGTGGTATCCCATTTGCCACCGCCTCTGCTGGCAAACTGCCCCT
CCTCCACCAGATGGGTGTCTTGCCCACCCATGCCATCGATTATACCAAAG
GCCCAAACCCCTACTTCGCTGCCGAAGTGTTGGCAGCCACGGATGGGGAA
GGGGTGCATCTTGTGCTTTGCTGTGTCGGCGCATCGTATTTCACTCAGAA
TTTAGAAGTGTTGGCAAAGGAGGGGAGGTTGGTCTTGTACGGCCTGATGA
GTGGGGCGATGGTGCCTGGGGATGCGGATCTAAGAGTGATGATGAAGAAG
CTTCTGACTGTCACGGCCACGACATTAAGGGGGAGAAATATTGATTATAA
AGAAAAATTGGTGAGGAGTTTCTGGACGGGGGAGAGAAAAGGGAGATTTG
TGAGGGGGGCGATGGTGG
back to top
Synonyms
Publications