jgi.p|Nanoce1779_2|585752, mRNA_3896 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585752
Unique NamemRNA_3896
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1772
Alignment locationscaffold_8:333259..336069 -

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Properties
Property NameValue
TranscriptId585838
TrackFilteredModels2
ProteinId585752
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:333259..336069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585752gene_3896Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585752mRNA_3896-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3896CDS_3896Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3896 ID=mRNA_3896|Name=jgi.p|Nanoce1779_2|585752|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
CAGGCTAAGGATCAACTCGCTGCTTGTGATGCTTGTCGTGTGAGCCCGCC
TGGAACCTTGCGCCTCTTGCTCTGGCAACCTCAACGGGCACTGCTACCGC
CGCAGCCAGCATCGGCAACACGAAGCAATTTTGAAAACAAGAACACAAGG
GGGGTCACAAAATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGC
ACCTGGTATGTCCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAG
GGCGACAAATAGGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAA
TAAGACCATACCCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCT
TCTTCCACCCTTCCCAACACCACCATCAGTCATATCACGGTCACACCCCG
TCCCTCGTTGACTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAG
GTCCACGACGATCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCA
CCGCTTTCCTCACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTC
CTACTCCTCCTCCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCT
CCTCCTCCTTATCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGA
GGAATCATGACGCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCT
CCTCTCGCCCCTCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTC
ATTTTTGGTCCCCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCT
CAAGTATTCTATGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGT
CTCCCTCTTCGCGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGT
TTGCCGGGTTTAAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTG
ATGCGGAGACAGAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTT
GATTGACATGATGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGC
GCGGTTCGATCGAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAG
TTGGGGAGATACGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAG
TATGCAGGTGGTGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGG
TGGCCTCGAGTAAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGG
CATGAAGAGGAGATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATA
CGAGGACGTGTCTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGG
AGGAACTGCTCAAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCT
CCAAGGCATGTTAAAGAGGAAGAGTAGAGGCCTTCCAACCAAGACTCGTT
TGACTGGCATGGAGGTGGCGGACACCAGGACCCGCACCACCTTTACTTCC
ACCACCACTACCAGCAGCAGGTCATGCAAAGTCAAGTTTCGGCTGCGACA
GCCATCGTTGCAGCCGGCTCCTCCCTTTGGGGGGCTTGCCAACAATGTAA
GCCAGCGGAAATGCAAGAAGAATGGTATGCCTCAGTAAGAGATGCACGAA
GAGGGGTTGTTCGCTTCGTTTGCTTCGCTTTCTGAAGGGTTGTTCTGATT
CTAAGGTGAGATCGACGTCGGCCATGGTTTAACTGAAAAAATATCACGAA
ATACCACATATTTCGATCAAAA
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protein sequence of jgi.p|Nanoce1779_2|585752

>mRNA_3896-protein ID=mRNA_3896-protein|Name=jgi.p|Nanoce1779_2|585752|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MKAAQRLVFRHVGTWYVPLCAGSHASTSARATNRIQVSAAAAVTTTIRPY
PHVWTSPPKPAASSSTLPNTTISHITVTPRPSLTLELTAVAASAQRGPRR
SLSSPSSEISPIAPLSSLLSCSFHPSSSSSYSSSYSSSSSSLSSSSSSSL
SFFSSSSFFPQKRGIMTQAIISSSLRTQRLLSPLLHSLPSSSATCRHFWS
PKFIRQLGLPWFAQVFYGTIFVIGVGVLAVSLFATSTAFAVLFLVAFAGF
KLLNRQPHLMRQVMRRQRPPGAPPSFFGPLIDMMTDGVMLDGLKNARGSI
ERDVLEIINVHPKLGRYGTDFHTTGLHKMSMQVVNGADKHVVMQFLVASS
KPREMFVQVVASRHEEEMGGEREGMERWEYEDVSVQTPDGKVIDLTEELL
KGKTNRRIVIDVAPRHVKEEE*
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mRNA from alignment at scaffold_8:333259..336069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3896 ID=mRNA_3896|Name=jgi.p|Nanoce1779_2|585752|organism=Nannochloropsis oceanica|type=mRNA|length=2811bp|location=Sequence derived from alignment at scaffold_8:333259..336069- (Nannochloropsis oceanica)
CAGGCTAAGGATCAACTCGCTGCTTGTGATGCTTGTCGTGTGAGCCCGCC
TGGAACCTTGCGCCTCTTGCTCTGGCAACCTCAACGGGCACTGCTACCGC
CGCAGCCAGCATCGGCAACACGAAGTAAGTCAGTCCGAACACAAGTTTCG
CAATTGATCGAACGCCCTAGGCTCTTGCACGCCGCATATCTCTACCCCTC
TCCTCAGAATAGTGGTGATGTTTTGTGTTTTGTCTTTTTCCAAATGATTA
GAAACTTGTCGTGACTGCGTCCAGGGTGGGTTGCCATAGCGTGTTGTGCC
TTGACCGGCGGCACGAACGCTCCTGATACTCGATGCCATTTATGAGTCCA
CGAAATGTGCATTGTAAAGGCGGGAGTAGAGCACAGATACCTTTTAGTAC
TTCGCTTTCATCTTTTGCGCCTGCCTCCCTTTTCAGTGTCCTTGTGGCCG
AAGGAGGGTATGCGTGGGGAGGGAGAGAGGGAGGGAGGGAGAACCCTGTC
TTATATTTTATGGTGGGCAGCTGTGAGATGTTTGGCTGCTTTATAAAGGC
AGACAGGACACTGCTTGTCTTCGTGACAAGAAGAAACTCAATTCAAGACG
AATAGGTCGGAGGGGCAAGTGTGTGTCGTTGGTCTTGTGACTGGCGAGAC
ATGCATGTCCTGTTCCCGTGGAAGAGAGCTGCGCCTTCCTTCTGGGGGTA
AGGCGCCCATCTACTTTCCTCCACGTTTTAGCACGACCCAGACGCGACGG
TCATGCGAGAGAAGAAGGCTTCTTTTTGCCTCGCTTTGGGGATTTGTGTG
TATGTATGCATGTGGTCCTCTTCCCAAACGAGGAAGGAGTCAACTCTCTT
TTTAATACGTTTTTTCCTTTTTTGAGGGAAACGCGCGACCGGATAATGCA
CTCATGCCCGACGCGGATATGTGCGAAAGGTTTCTCTCGCGACAACTCTT
TCCAAGTTTGATCCTTCCGCCACATGAGCACATCATTCTAGTAAGCTGAT
GGTAAAAGACGCACATACAACGAGACACGATGACAAGGAGCGGGAGGAGC
AGAAAGGCGAGAGGAAGAGAGAAATTCTCTGACTATATATTCACTGGTGT
CAATATCATTTATTTTCATGGCCCCTTTCTTTCAAACAACCAAAAACGAA
ACAAACCATGCAGGCAATTTTGAAAACAAGAACACAAGGGGGGTCACAAA
ATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGCACCTGGTATGT
CCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAGGGCGACAAATA
GGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAATAAGACCATAC
CCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCTTCTTCCACCCT
TCCCAACACCACCATCAGTCATATCACGGTCACACCCCGTCCCTCGTTGA
CTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAGGTCCACGACGA
TCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCACCGCTTTCCTC
ACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCTCCTCCTCCTTA
TCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGAGGAATCATGAC
GCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCTCCTCTCGCCCC
TCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTCATTTTTGGTCC
CCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCTCAAGTATTCTA
TGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGTCTCCCTCTTCG
CGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGTTTGCCGGGTTT
AAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTGATGCGGAGACA
GAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTTGATTGACATGA
TGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGCGCGGTTCGATC
GAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAGTTGGGGAGATA
CGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAGTATGCAGGTGG
TGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGGTGGCCTCGAGT
AAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGGCATGAAGAGGA
GATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATACGAGGACGTGT
CTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGGAGGAACTGCTC
AAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCTCCAAGGCATGT
TAAAGAGGAAGAGTAGAGGCCTTCCAACCAAGACTCGTTTGACTGGCATG
GAGGTGGCGGACACCAGGACCCGCACCACCTTTACTTCCACCACCACTAC
CAGCAGCAGGTCATGCAAAGTCAAGTTTCGGCTGCGACAGCCATCGTTGC
AGCCGGCTCCTCCCTTTGGGGGGCTTGCCAACAATGTAAGCCAGCGGAAA
TGCAAGAAGAATGGTATGCCTCAGTAAGAGATGCACGAAGAGGGGTTGTT
CGCTTCGTTTGCTTCGCTTTCTGAAGGGTTGTTCTGATTCTAAGGTGAGA
TCGACGTCGGCCATGGTTTAACTGAAAAAATATCACGAAATACCACATAT
TTCGATCAAAA
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Coding sequence (CDS) from alignment at scaffold_8:333259..336069-

>mRNA_3896 ID=mRNA_3896|Name=jgi.p|Nanoce1779_2|585752|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_8:333259..336069- (Nannochloropsis oceanica)
ATGAAGGCAGCGCAACGGTTGGTGTTCCGCCACGTCGGCACCTGGTATGT
CCCCCTCTGTGCAGGAAGCCATGCCAGCACCAGTGCCAGGGCGACAAATA
GGATACAAGTGTCAGCAGCGGCAGCAGTGACGACGACAATAAGACCATAC
CCGCATGTATGGACATCGCCACCCAAGCCCGCTGCTTCTTCTTCCACCCT
TCCCAACACCACCATCAGTCATATCACGGTCACACCCCGTCCCTCGTTGA
CTCTGGAGTTGACAGCAGTAGCTGCATCAGCTCAAAGAGGTCCACGACGA
TCGCTATCCTCTCCTTCGTCTGAGATCTCGCCAATAGCACCGCTTTCCTC
ACTCCTCTCGTGCTCTTTCCACCCTTCCTCCTCCTCCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCCTCCTTATCCTCCTCCTCCTCCTCCTCCTTA
TCCTTCTTCTCCTCCTCCTCTTTTTTCCCACAAAAACGAGGAATCATGAC
GCAAGCCATTATCTCCTCCTCCCTTCGCACACAACGTCTCCTCTCGCCCC
TCCTCCACTCCCTTCCCTCTTCTTCTGCGACATGCCGTCATTTTTGGTCC
CCGAAATTCATTCGCCAGTTGGGCTTACCCTGGTTTGCTCAAGTATTCTA
TGGAACGATTTTTGTGATTGGAGTTGGTGTATTAGCGGTCTCCCTCTTCG
CGACTTCAACGGCATTTGCTGTCTTGTTTTTGGTGGCGTTTGCCGGGTTT
AAACTTTTGAATCGGCAACCGCATTTGATGCGGCAGGTGATGCGGAGACA
GAGGCCTCCAGGGGCACCGCCATCGTTCTTTGGGCCGTTGATTGACATGA
TGACGGACGGTGTGATGTTGGATGGGTTGAAGAATGCGCGCGGTTCGATC
GAACGCGACGTGTTGGAGATTATTAATGTGCACCCGAAGTTGGGGAGATA
CGGGACGGATTTTCATACGACGGGTTTGCATAAGATGAGTATGCAGGTGG
TGAATGGAGCAGACAAGCATGTTGTGATGCAATTTTTGGTGGCCTCGAGT
AAACCAAGGGAGATGTTTGTTCAGGTGGTGGCGAGTCGGCATGAAGAGGA
GATGGGAGGGGAACGAGAGGGGATGGAGAGGTGGGAATACGAGGACGTGT
CTGTGCAGACGCCCGACGGAAAGGTCATCGATTTGACGGAGGAACTGCTC
AAGGGCAAGACAAATAGGCGAATCGTCATTGACGTGGCTCCAAGGCATGT
TAAAGAGGAAGAGTAG
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Synonyms
Publications