jgi.p|Nanoce1779_2|585744, mRNA_3893 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585744
Unique Name	mRNA_3893
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1075
Alignment location	scaffold_8:323748..324822 +

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Properties


Property Name	Value
TranscriptId	585830
Track	FilteredModels2
ProteinId	585744

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:323748..324822 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585744	gene_3893	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585744	mRNA_3893-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3893	CDS_3893	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:323748..324822+
coding sequence from alignment at scaffold_8:323748..324822+

mRNA sequence

>mRNA_3893 ID=mRNA_3893|Name=jgi.p|Nanoce1779_2|585744|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp
CAACAACAACAACAACAACAACAACAACAACAACATCTCTAATGCAGGAA
AAGAATCGACATGCAGTGTCCCTGGTAGCAGAATGCCTCGCGAATCCAGC
GACAGCAGCAACAGCAGCGACAGCAGCAACAGCAGCAGCAGTCGACCTAA
CAGCACCAGCAACATCAAGGGAGGGGAAAGTAGAGGAGGGACAATGCCTT
CCCACCCGCTCTCCCTCCGTCCCTGGCTCATTCTTCGCCTCGATCTGCTC
CGGTGGCTGAAGCTTGTCTCGTCCCCTCCTCCTCCTCCCAGCCGCAGCAA
CGGCAGCAGCAACAGCATCAGTCGTGGCTGTCGCACCTCTTCCTCCCTCA
TGTCACGCACTGCCTCCTCCTCCTCTACCTCACGCTTGCCCTCCCGCTCT
CCTGCCCGACGCCGACGCCGTACGAAAGAGGTAGTTGAGGACCGGGAGAA
TCAAGAAGCAGCAGCAACAACACAAGAGAAGGAGGACGTCGATGTGGACC
AAGGGACCGCAACATCGCCCAATTTCAGTCGTCTGTTGAGTGGAATGAGC
TTTCAGGTGCAGGTTGAGCGCCCCTGCGTCGCCATGTGGCCCGGGAAAAG
GCTCGGACTGCTCGACGAAGGAGCATCCCCCACCGTTGGTACTGCTGGTG
ATGATGATGCTGCTGCTGCTGCTACTGCTGCTGCTGGCGGTGTCTCCTCC
CCAAGTGTGGGCACTTCGACCATTTCTCCCGGTCGGTCCGGTCTTCCCTC
CACCCCTCCCTCTTACCCGTCCTCCTCCGCATCCTCTTCCATTCCTCCTC
CAGAGAAAGAGACAAATGAAGTTTTTGAAGGCCGAGGTATGCTACTCCTC
ATGCGCGATCTGGTTATCCAAAACATAAACGAACTCCTACCAGGACAAGA
GGGTCGTTCCCTGACAGGCACCAGGCCCCATCTCCACTCCCGCACCCTCC
TAAGCAGACAAGACGCCGAAGGCCTCGAGATGTACCTGGTCTCTTTCCTC
AAATGCCATCAACCGACGGCATGGCGCGTGAAGCAAGGACGAGGGCAGCA
AGGGGGAGGTGGACGAGCTGGACGG

protein sequence of jgi.p|Nanoce1779_2|585744

>mRNA_3893-protein ID=mRNA_3893-protein|Name=jgi.p|Nanoce1779_2|585744|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MMMLLLLLLLLLAVSPPQVWALRPFLPVGPVFPPPLPLTRPPPHPLPFLL
QRKRQMKFLKAEVCYSSCAIWLSKT*

mRNA from alignment at scaffold_8:323748..324822+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3893 ID=mRNA_3893|Name=jgi.p|Nanoce1779_2|585744|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp|location=Sequence derived from alignment at scaffold_8:323748..324822+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACATCTCTAATGCAGGAA
AAGAATCGACATGCAGTGTCCCTGGTAGCAGAATGCCTCGCGAATCCAGC
GACAGCAGCAACAGCAGCGACAGCAGCAACAGCAGCAGCAGTCGACCTAA
CAGCACCAGCAACATCAAGGGAGGGGAAAGTAGAGGAGGGACAATGCCTT
CCCACCCGCTCTCCCTCCGTCCCTGGCTCATTCTTCGCCTCGATCTGCTC
CGGTGGCTGAAGCTTGTCTCGTCCCCTCCTCCTCCTCCCAGCCGCAGCAA
CGGCAGCAGCAACAGCATCAGTCGTGGCTGTCGCACCTCTTCCTCCCTCA
TGTCACGCACTGCCTCCTCCTCCTCTACCTCACGCTTGCCCTCCCGCTCT
CCTGCCCGACGCCGACGCCGTACGAAAGAGGTAGTTGAGGACCGGGAGAA
TCAAGAAGCAGCAGCAACAACACAAGAGAAGGAGGACGTCGATGTGGACC
AAGGGACCGCAACATCGCCCAATTTCAGTCGTCTGTTGAGTGGAATGAGC
TTTCAGGTGCAGGTTGAGCGCCCCTGCGTCGCCATGTGGCCCGGGAAAAG
GCTCGGACTGCTCGACGAAGGAGCATCCCCCACCGTTGGTACTGCTGGTG
ATGATGATGCTGCTGCTGCTGCTACTGCTGCTGCTGGCGGTGTCTCCTCC
CCAAGTGTGGGCACTTCGACCATTTCTCCCGGTCGGTCCGGTCTTCCCTC
CACCCCTCCCTCTTACCCGTCCTCCTCCGCATCCTCTTCCATTCCTCCTC
CAGAGAAAGAGACAAATGAAGTTTTTGAAGGCCGAGGTATGCTACTCCTC
ATGCGCGATCTGGTTATCCAAAACATAAACGAACTCCTACCAGGACAAGA
GGGTCGTTCCCTGACAGGCACCAGGCCCCATCTCCACTCCCGCACCCTCC
TAAGCAGACAAGACGCCGAAGGCCTCGAGATGTACCTGGTCTCTTTCCTC
AAATGCCATCAACCGACGGCATGGCGCGTGAAGCAAGGACGAGGGCAGCA
AGGGGGAGGTGGACGAGCTGGACGG

Coding sequence (CDS) from alignment at scaffold_8:323748..324822+

>mRNA_3893 ID=mRNA_3893|Name=jgi.p|Nanoce1779_2|585744|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_8:323748..324822+ (Nannochloropsis oceanica)
ATGATGATGCTGCTGCTGCTGCTACTGCTGCTGCTGGCGGTGTCTCCTCC
CCAAGTGTGGGCACTTCGACCATTTCTCCCGGTCGGTCCGGTCTTCCCTC
CACCCCTCCCTCTTACCCGTCCTCCTCCGCATCCTCTTCCATTCCTCCTC
CAGAGAAAGAGACAAATGAAGTTTTTGAAGGCCGAGGTATGCTACTCCTC
ATGCGCGATCTGGTTATCCAAAACATAA

Synonyms

Publications