jgi.p|Nanoce1779_2|239064, mRNA_389 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|239064
Unique NamemRNA_389
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length984
Alignment locationscaffold_3:971309..972758 -

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Properties
Property NameValue
TranscriptId239150
TrackFilteredModels2
ProteinId239064
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:971309..972758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|239064gene_389Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|239064mRNA_389-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_389CDS_389Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_389 ID=mRNA_389|Name=jgi.p|Nanoce1779_2|239064|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
AAGTGTTTCTCCAGTGCCAAGCCACTTCCTCCATACACACAAGACCCCGC
AAAGCCCCGCCTTCCCCTCCCGCGCATCAGCCATGTTCGCTTTTATCGAG
AGTTTCAAGCCCTTTGACGTGAACAAAGTAAAGCCGTATCTAAAGATGGC
CGTGCAACGCATCCAGATCGCCACCAACAAGAAGACGGCGGCCGTCAAGA
TGGCCCAACGCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAA
GCCGCGATCAAGGTGGAGGCCATTATTCGTGAGGACGCCACCATCGAAGC
CTATGGCATCTTGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCC
TTGTTGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTC
ACTTTAATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGT
CAAAAAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGG
AGAAGGATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCG
ATTCGGCCTGTGCGTCCCAAAAGGGAGGGAGGGAGAGAGAAAGGGAGAGG
GAAGGAGAGGATGGAGAGGGAGACAGATTTTTCCAAATTTTCTCGTGATT
ATGTGGGTGTCCCTCCCTCCGACCCATTGGCTTCATCCGGCTTATGTCCG
AAAAGTGTTCACCCTTCTCCCTCCTTCCATTCCTTTTTCCCTCCCTCCTC
TCACAATAGCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGC
GCTCAAAAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGA
CAGAAGACCAGAAAGCCTTCTCATCGATGCCCGCCCCAACGGGCGCGTCC
GTTGGCATGGGCCCGGCATCTGGTTTTGGCCATCTCTATCATACTGGTGC
AACAGCTACTCCTAGTTCTTCCGCCCCTGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|239064

>mRNA_389-protein ID=mRNA_389-protein|Name=jgi.p|Nanoce1779_2|239064|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MFAFIESFKPFDVNKVKPYLKMAVQRIQIATNKKTAAVKMAQREVANLLA
QQKDEKAAIKVEAIIREDATIEAYGILELVCDLLHERARLVASEKECPED
LKSAVVTLIWATNRADIMELHEVKKQFAKKFGKEFVERAEKDEDRLVNER
VAHKLSIRPVRPKREGGREKGRGKERMERETDFSKFSRDYVGVPPSDPLA
SSGLCPKSVHPSPSFHSFFPPSSHNSPPPPSSRSIFARSRSKMMLNGLLS
SILAT*
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mRNA from alignment at scaffold_3:971309..972758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_389 ID=mRNA_389|Name=jgi.p|Nanoce1779_2|239064|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_3:971309..972758- (Nannochloropsis oceanica)
AAGTGTTTCTCCAGTGCCAAGCCACTTCCTCCATACACACAAGACCCCGC
AAAGCCCCGCCTTCCCCTCCCGCGCATCAGCCATGTTCGCTTTTATCGAG
AGTTTCAAGCCCTTTGACGTGAACAAAGTAAAGCCGTATCTAAAGATGGC
CGTGCAACGCATCCAGATCGCCACCAACAAGAAGACGGCGGCCGTCAAGT
ACGTAGTAGGGCGGCGAGGGAAAGGCTGGCCGAAGCAAAAGCAGAGGCCC
ATCTTCATGTGCTCATGTCCCTCCCCTTCTTTTCTTCACACGACGACACG
ACCGGTAGGATGGCCCAACGCGAGGTCGCCAATTTGCTTGCACAACAGAA
AGATGAGAAAGCCGCGATCAAGGTGGAGGCCATTATTCGGTACGTACCTA
TGCCTCTGTTGTCCTCCCGAAATGAGCTTATGCGCCAGAACGCCCGCTGT
CCCTCCCTCGTTCATCCAATTTCACCAACCGTCCATCCCATTCTTCTTCT
GTCGCATGACAAACCTCACAAAACCACACCTAAATCAACAGTGAGGACGC
CACCATCGAAGCCTATGGCATCTTGGAATTGGTCTGCGATTTATTGCACG
AACGCGCCCGCCTTGTTGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAG
TCCGCGGTTGTCACTTTAATTTGGGCCACCAACCGAGCAGATATCATGGA
GCTGCATGAGGTCAAAAAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTG
TGGAGCGCGCGGAGAAGGATGAGGACCGGCTGGTCAATGAACGCGTGGCC
CATAAATTGTCGATTCGGCCTGTGCGTCCCAAAAGGGAGGGAGGGAGAGA
GAAAGGGAGAGGGAAGGAGAGGATGGAGAGGGAGACAGATTTTTCCAAAT
TTTCTCGTGATTATGTGGGTGTCCCTCCCTCCGACCCATTGGCTTCATCC
GGCTTATGTCCGAAAAGTGTTCACCCTTCTCCCTCCTTCCATTCCTTTTT
CCCTCCCTCCTCTCACAATAGCCCTCCGCCGCCATCGTCGAGAAGTATCT
TCGCGAGATCGCGCTCAAAAATGATGTTGAATGGACTCCTCTCGAGCATC
CTTGCGACCTGACAGAAGACCAGAAAGCCTTCTCATCGATGCCCGCCCCA
ACGGGCGCGTCCGTTGGCATGGGCCCGGCATCTGGTTTTGGCCATCTCTA
TCATACTGGTGGTGCTGGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAG
GAGGGGGAGGGATGAGCATGCCTATCGCCCGTCCCATCAGCCCTCCCTGT
CCGTCTCCCTCTTGTGACTTTATGACAAGCACCAGTGGCAGCAATAATGG
TGATGATTGTGAGAAGGATCCCTTTCAACCTCCCTCCCGCCAACCCCCTC
CGCTCCCTTCCCAAGCAACAGCTACTCCTAGTTCTTCCGCCCCTGCTGCT
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Coding sequence (CDS) from alignment at scaffold_3:971309..972758-

>mRNA_389 ID=mRNA_389|Name=jgi.p|Nanoce1779_2|239064|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_3:971309..972758- (Nannochloropsis oceanica)
TGAGGACGCCACCATCGAAGCCTATGGCATCTTGGAATTGGTCTGCGATT
TATTGCACGAACGCGCCCGCCTTGTTGCCTCCGAGAAAGAGTGCCCGGAG
GACTTGAAGTCCGCGGTTGTCACTTTAATTTGGGCCACCAACCGAGCAGA
TATCATGGAGCTGCATGAGGTCAAAAAGCAATTCGCCAAGAAGTTTGGCA
AGGAATTTGTGGAGCGCGCGGAGAAGGATGAGGACCGGCTGGTCAATGAA
CGCGTGGCCCATAAATTGTCGATTCGGCCTGTGCGTCCCAAAAGGGAGGG
AGGGAGAGAGAAAGGGAGAGGGAAGGAGAGGATGGAGAGGGAGACAGATT
TTTCCAAATTTTCTCGTGATTATGTGGGTGTCCCTCCCTCCGACCCATTG
GCTTCATCCGGCTTATGTCCGAAAAGTGTTCACCCTTCTCCCTCCTTCCA
TTCCTTTTTCCCTCCCTCCTCTCACAATAGCCCTCCGCCGCCATCGTCGA
GAAGTATCTTCGCGAGATCGCGCTCAAAAATGATGTTGAATGGACTCCTC
TCGAGCATCCTTGCGACCTGAGATGGCCCAACGCGAGGTCGCCAATTTGC
TTGCACAACAGAAAGATGAGAAAGCCGCGATCAAGGTGGAGGCCATTATT
CGATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTGACGTGAACAAAGTA
AAGCCGTATCTAAAGATGGCCGTGCAACGCATCCAGATCGCCACCAACAA
GAAGACGGCGGCCGTCAATGAGGACGCCACCATCGAAGCCTATGGCATCT
TGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGTTGCCTCC
GAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTTTAATTTG
GGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAAAAGCAAT
TCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAAGGATGAG
GACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTCGGCCTGT
GCGTCCCAAAAGGGAGGGAGGGAGAGAGAAAGGGAGAGGGAAGGAGAGGA
TGGAGAGGGAGACAGATTTTTCCAAATTTTCTCGTGATTATGTGGGTGTC
CCTCCCTCCGACCCATTGGCTTCATCCGGCTTATGTCCGAAAAGTGTTCA
CCCTTCTCCCTCCTTCCATTCCTTTTTCCCTCCCTCCTCTCACAATAGCC
CTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTCAAAAATG
ATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGAGATGGCCCAAC
GCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCGCGATC
AAGGTGGAGGCCATTATTCGATGTTCGCTTTTATCGAGAGTTTCAAGCCC
TTTGACGTGAACAAAGTAAAGCCGTATCTAAAGATGGCCGTGCAACGCAT
CCAGATCGCCACCAACAAGAAGACGGCGGCCGTCAATGAGGACGCCACCA
TCGAAGCCTATGGCATCTTGGAATTGGTCTGCGATTTATTGCACGAACGC
GCCCGCCTTGTTGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGC
GGTTGTCACTTTAATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGC
ATGAGGTCAAAAAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAG
CGCGCGGAGAAGGATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAA
ATTGTCGATTCGGCCTGTGCGTCCCAAAAGGGAGGGAGGGAGAGAGAAAG
GGAGAGGGAAGGAGAGGATGGAGAGGGAGACAGATTTTTCCAAATTTTCT
CGTGATTATGTGGGTGTCCCTCCCTCCGACCCATTGGCTTCATCCGGCTT
ATGTCCGAAAAGTGTTCACCCTTCTCCCTCCTTCCATTCCTTTTTCCCTC
CCTCCTCTCACAATAGCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCG
AGATCGCGCTCAAAAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGC
GACCTGAGATGGCCCAACGCGAGGTCGCCAATTTGCTTGCACAACAGAAA
GATGAGAAAGCCGCGATCAAGGTGGAGGCCATTATTCGATGTTCGCTTTT
ATCGAGAGTTTCAAGCCCTTTGACGTGAACAAAGTAAAGCCGTATCTAAA
GATGGCCGTGCAACGCATCCAGATCGCCACCAACAAGAAGACGGCGGCCG
TCAA
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Synonyms
Publications