jgi.p|Nanoce1779_2|585733, mRNA_3889 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585733
Unique NamemRNA_3889
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length747
Alignment locationscaffold_8:315978..316724 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585819
TrackFilteredModels2
ProteinId585733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:315978..316724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585733gene_3889Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585733mRNA_3889-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3889CDS_3889Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3889 ID=mRNA_3889|Name=jgi.p|Nanoce1779_2|585733|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ACAGGATCCAAAACATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAG
GCCGCTGCCGCGGCTGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGA
CGCCACCATGCCACCGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCT
TGGCCCTGACCTTTTTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGA
CTGAAAGGACGATACAACAACTTGATGGCACGGACTCACCAGGTGAACAA
GAAGGACACCAAGGAGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCA
CTGCCGCGCATGCCAATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCA
TGCATCATGGCACACATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCT
ATGCACCCTTTTTTTGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCG
TGGGGACGAATGAGTGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGG
GGCTTGGTTGCGGCGATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGG
TTTATAACTAGAAGGAGGGAGGGACGTCAAGGGGGAAAGATAAGTGAGGA
TTTATGTCTGCTGTCTACCGATAATTGTATTGTTATGGAACTGAGGAAGA
AGACGGGGAGGAACAAGGCTTTGCCCATCTCATCGGAAGTTGAGATGTGG
CCATTGGCTTGTGTACCAAAGAATGAGACATGTGTTTTAACAGAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|585733

>mRNA_3889-protein ID=mRNA_3889-protein|Name=jgi.p|Nanoce1779_2|585733|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MFGSKKKDAAAKAAAAAASSSSALWSYCDATMPPLVTPLRAILWCLALTF
LPHLLRVPMVLRLKGRYNNLMARTHQVNKKDTKEHPESVKMIQRATAAHA
NSWEAFAYFSVSCIMAHILKLDVQVASSLCTLFLVLRFAYVLLYIVGTNE
WVGAARSLVWVGGLVAAMRMSILALNQAGL*
back to top

mRNA from alignment at scaffold_8:315978..316724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3889 ID=mRNA_3889|Name=jgi.p|Nanoce1779_2|585733|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at scaffold_8:315978..316724- (Nannochloropsis oceanica)
ACAGGATCCAAAACATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAG
GCCGCTGCCGCGGCTGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGA
CGCCACCATGCCACCGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCT
TGGCCCTGACCTTTTTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGA
CTGAAAGGACGATACAACAACTTGATGGCACGGACTCACCAGGTGAACAA
GAAGGACACCAAGGAGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCA
CTGCCGCGCATGCCAATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCA
TGCATCATGGCACACATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCT
ATGCACCCTTTTTTTGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCG
TGGGGACGAATGAGTGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGG
GGCTTGGTTGCGGCGATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGG
TTTATAACTAGAAGGAGGGAGGGACGTCAAGGGGGAAAGATAAGTGAGGA
TTTATGTCTGCTGTCTACCGATAATTGTATTGTTATGGAACTGAGGAAGA
AGACGGGGAGGAACAAGGCTTTGCCCATCTCATCGGAAGTTGAGATGTGG
CCATTGGCTTGTGTACCAAAGAATGAGACATGTGTTTTAACAGAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_8:315978..316724-

>mRNA_3889 ID=mRNA_3889|Name=jgi.p|Nanoce1779_2|585733|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_8:315978..316724- (Nannochloropsis oceanica)
ATGTTTGGTAGCAAGAAGAAAGATGCAGCTGCCAAGGCCGCTGCCGCGGC
TGCCTCCTCATCATCCGCGTTGTGGAGCTACTGCGACGCCACCATGCCAC
CGCTCGTTACCCCGCTCCGCGCCATTTTGTGGTGCTTGGCCCTGACCTTT
TTGCCGCACCTCCTGCGGGTGCCCATGGTGCTTCGACTGAAAGGACGATA
CAACAACTTGATGGCACGGACTCACCAGGTGAACAAGAAGGACACCAAGG
AGCATCCAGAATCTGTCAAAATGATCCAAAGGGCCACTGCCGCGCATGCC
AATAGTTGGGAGGCCTTTGCGTACTTTTCCGTTTCATGCATCATGGCACA
CATCTTGAAGTTGGATGTCCAAGTTGCCTCTAGCCTATGCACCCTTTTTT
TGGTGCTTCGATTTGCCTATGTGCTGCTGTACATCGTGGGGACGAATGAG
TGGGTCGGAGCGGCGCGGTCATTGGTATGGGTCGGGGGCTTGGTTGCGGC
GATGCGGATGTCGATTTTGGCCCTGAACCAAGCAGGTTTATAA
back to top
Synonyms
Publications