jgi.p|Nanoce1779_2|585732, mRNA_3888 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585732
Unique Name	mRNA_3888
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1141
Alignment location	scaffold_8:313585..315960 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585818
Track	FilteredModels2
ProteinId	585732

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:313585..315960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585732	gene_3888	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585732	mRNA_3888-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3888	CDS_3888	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:313585..315960+
coding sequence from alignment at scaffold_8:313585..315960+

mRNA sequence

>mRNA_3888 ID=mRNA_3888|Name=jgi.p|Nanoce1779_2|585732|organism=Nannochloropsis oceanica|type=mRNA|length=1141bp
ACAGGCATCACTCTTCCCAGGCAACGTCCGTAGGAGAACAGAAGCCATGG
CTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGGAGGCAAG
AAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACATCAAGGC
CCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCACGCGCA
CCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTATTCGAG
GTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTATCGCAA
ATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGACGAACT
TTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCATCAAGAAG
TGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGACGGCTA
CACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCGGCCAGG
TGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATCAGGAAG
AAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCTGAAGGA
ACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATCGAGAAGG
CCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAGGTGAAG
GTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGATTCATGA
GGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGACCAGAGG
AACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTGTAAGGC
TGTTGCTGGCGTAGGGGTGGAGGGAGGGGAGAGGGGGGTATTACTTTTGT
AATTCTCCTTTTCTTCCGGCGGGAGTCCCTTCTTTCGGCCCGGGTGGTGC
GGGAGGGACGGGAGTGAAGGCTGTGACGTTGGCAGCCCGGGAGTCAGTTA
GGAACGTATTTCTTGTCTTCTTTTTGTTTCGTGTAGGCAGGTGGCAGAGC
GCGAGGCAGAAAAGACGACGAAGAAAGCAAGCGTGAGAACGCGAATATAC
CAACAAGCAAAAAAGAAGGCAAAAAACACAAGCAAAATCAA

protein sequence of jgi.p|Nanoce1779_2|585732

>mRNA_3888-protein ID=mRNA_3888-protein|Name=jgi.p|Nanoce1779_2|585732|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAVGKNQKRVSKGRKGGKKKITDPFLKKEWYDIKAPGYFKTRAVGKTLIT
RTTGTKIASEGLKGRVFEVNLAELQGGDEEQGYRKFQLVAEDVKGTEILT
NFHGMDLTREKINSLIKKWQTLIEAHVEAKTTDGYTLRLFAVAFTKRVPG
QVSKAAYAQAAQVRAIRKKIVDIIKEKVEKNDLKELVKLFIPEQIGREIE
KAAKGIFPLSVVYVRKVKVLKKPKFDLVKLMEIHEGQTPVDDTGAGIDRP
EEPALVPEVAGSGGRL*

mRNA from alignment at scaffold_8:313585..315960+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3888 ID=mRNA_3888|Name=jgi.p|Nanoce1779_2|585732|organism=Nannochloropsis oceanica|type=mRNA|length=2376bp|location=Sequence derived from alignment at scaffold_8:313585..315960+ (Nannochloropsis oceanica)
ACAGGCATCACTCTTCCCAGGCAACGTCCGTAGGAGAACAGAAGCCATGG
CTGTTGGTAAGTGGTCAAACGATGCGAGGGGTAGGGTTGGATAGGGGACG
ATGGAAAGGAAGAAATAGAGGATGGCCTTCGGGTCGTGGGACATGTTGCT
GCGATGAGTGGATTGTACACCCTTGGTATCTATCTGGTAGTCTTGGCAAG
GAAGGTGGCAGAGCGTGGAAGAGGATGCGAGCAGTGTACATATGCGTGTA
GGCCTTCAGAAGTCACCACTTTGTTCTCATCACTCCCTATCCCCCTCCTC
GTCCTCCCCCTCTTATCTACAAAAGGCAAGAACCAAAAGCGGGTCTCCAA
GGGCCGAAAAGGAGGCAAGAAGAAGATGTAAGCAGTGCTGCTCCCGCTCT
TCTCATTCCTTTTCCCAATGGATGTTACGCAAACCACTACTCTCCGTCCC
TTCCCTCACACATGATCCCCCTCCCCCTCCTCTTCCCCCTTTCCTCTCTA
GTACCGACCCTTTTCTGAAGAAGGAATGGTACGACATCAAGGCCCCCGGG
TACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCACGCGCACCACCGG
CACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTATTCGAGGTGAATC
TGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTATCGCAAATTTCAG
CTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGACGAACTTTCACGG
GATGGACTTGACAAGGTATGTCAAAGGTGAAAGGGGCGAGGGAGGAGTAG
GATGCCACACCGAGGTTTTGGGAGCGAGAGAAGGCTTTAGTTTCAGACTA
TCTTGTTTTCTGCGCGGGTTACTTCAGGCGTCGTTTTGAGAAGTATGCGT
ATGTAGGATAGCTGCCTGATCTGTTCTTAAAATGCACTCTCTCACATGTT
TGTCCTTCCCCCCCTCCATCCCTCATTCCCTTCCTCCCACTCCCTCTTTC
TCTTCTCCATTCACAGGGAGAAGATCAACTCGCTCATCAAGAAGTGGCAG
ACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGACGGCTACACTTT
GCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCGGCCAGGTGTCCA
AGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATCAGGAAGAAGATC
GTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCTGAAGGAACTGGT
GAAGCTTTTGTGAGTATTTCTCATCTAAAATGATCGCTTTTTTATATCAC
AAGGGATGGAGGGAGGGAGAGAGGAGGGGTGTGTGGGGTTTTTCAGGACC
CACCATTTCCGAGCCAAGGGAAGGTGTGGGTGATGGATGCTTCCCTTTTG
TGTATATATGAGCTCATCTGTGTATTGCTCTAGTCATGTCCATTTCTTTT
TTTTATCCATTTACTTGTTATTATTTATTATTAATATTATTATTAATATT
ATAATTATCCAGATTTTTTTTTTTTAATGACATGCAGTTCACTCTGCCAC
GGAGCCCCAGCGAGTCTATCGCCAGGCCACGGGAAAATCGAATCAAAACT
CCCTGCTCTGCCATGTGACTGCACAGAGAGAACGTTAATTATGTCCCTCA
TAGGAACCTCTATGTAAGAAGTCCTACGGGGCAGCATGCGCAGTGAGGGC
TGACGAGGAACAACATCTTCCATTAAGTTTCTATAAAAACTCCATTTCAA
TGTCTAAATTTGTATATCTTAGTAATTTTTTCCGATGTCAAAAATGCCGG
CGCACTCACCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCAACACAG
CATCCCCGAGCAAATCGGTCGCGAGATCGAGAAGGCCGCCAAGGGCATCT
TCCCCCTCTCGGTCGTGTATGTTCGTAAGGTGAAGGTCCTTAAGAAGCCT
AAATTCGATCTGGTGAAGCTCATGGAGATTCATGAGGGACAGACACCCGT
GGACGACACTGGCGCGGGCATTGACCGACCAGAGGAACCGGCCTTGGTGC
CGGAAGTGGCTGGCTCGGGAGGGCGGCTGTAAGGCTGTTGCTGGCGTAGG
GGTGGAGGGAGGGGAGAGGGGGGTATTACTTTTGTAATTCTCCTTTTCTT
CCGGCGGGAGTCCCTTCTTTCGGCCCGGGTGGTGCGGGAGGGACGGGAGT
GAAGGCTGTGACGTTGGCAGCCCGGGAGTCAGTTAGGAACGTATTTCTTG
TCTTCTTTTTGTTTCGTGTAGGCAGGTGGCAGAGCGCGAGGCAGAAAAGA
CGACGAAGAAAGCAAGCGTGAGAACGCGAATATACCAACAAGCAAAAAAG
AAGGCAAAAAACACAAGCAAAATCAA

Coding sequence (CDS) from alignment at scaffold_8:313585..315960+

>mRNA_3888 ID=mRNA_3888|Name=jgi.p|Nanoce1779_2|585732|organism=Nannochloropsis oceanica|type=CDS|length=4005bp|location=Sequence derived from alignment at scaffold_8:313585..315960+ (Nannochloropsis oceanica)
ATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGGAGG
CAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACATCA
AGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCACG
CGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTATT
CGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTATC
GCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGACG
AACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCATCAA
GAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGACG
GCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCGGC
CAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATCAG
GAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCTGA
AGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATCGAG
AAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAGGT
GAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGATTC
ATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGACCA
GAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTGTA
AATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGGAG
GCAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACATC
AAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCAC
GCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTAT
TCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTAT
CGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGAC
GAACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCATCA
AGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGAC
GGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCGG
CCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATCA
GGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCTG
AAGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATCGA
GAAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAGG
TGAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGATT
CATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGACC
AGAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTGT
AAATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGGA
GGCAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACAT
CAAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATCA
CGCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGTA
TTCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCTA
TCGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTGA
CGAACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCATC
AAGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAGA
CGGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCCG
GCCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGATC
AGGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACCT
GAAGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATCG
AGAAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAAG
GTGAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGAT
TCATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGAC
CAGAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCTG
TAAATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAGG
AGGCAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGACA
TCAAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCATC
ACGCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTGT
ATTCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGCT
ATCGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCTG
ACGAACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCAT
CAAGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACAG
ACGGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCCC
GGCCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGAT
CAGGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGACC
TGAAGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGATC
GAGAAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTAA
GGTGAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAGA
TTCATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCGA
CCAGAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGCT
GTAAATGGCTGTTGGCAAGAACCAAAAGCGGGTCTCCAAGGGCCGAAAAG
GAGGCAAGAAGAAGATTACCGACCCTTTTCTGAAGAAGGAATGGTACGAC
ATCAAGGCCCCCGGGTACTTTAAAACCCGCGCGGTGGGCAAGACGCTCAT
CACGCGCACCACCGGCACCAAGATTGCTTCCGAGGGACTCAAGGGCCGTG
TATTCGAGGTGAATCTGGCTGAGCTGCAGGGCGGGGACGAGGAGCAGGGC
TATCGCAAATTTCAGCTGGTGGCGGAGGATGTGAAGGGCACGGAGATTCT
GACGAACTTTCACGGGATGGACTTGACAAGGGAGAAGATCAACTCGCTCA
TCAAGAAGTGGCAGACGCTGATCGAAGCGCACGTGGAGGCCAAGACGACA
GACGGCTACACTTTGCGGTTGTTCGCTGTGGCCTTCACCAAGCGTGTCCC
CGGCCAGGTGTCCAAGGCAGCCTACGCGCAAGCGGCCCAGGTGCGCGCGA
TCAGGAAGAAGATCGTGGATATCATCAAGGAGAAGGTGGAGAAGAATGAC
CTGAAGGAACTGGTGAAGCTTTTCATCCCCGAGCAAATCGGTCGCGAGAT
CGAGAAGGCCGCCAAGGGCATCTTCCCCCTCTCGGTCGTGTATGTTCGTA
AGGTGAAGGTCCTTAAGAAGCCTAAATTCGATCTGGTGAAGCTCATGGAG
ATTCATGAGGGACAGACACCCGTGGACGACACTGGCGCGGGCATTGACCG
ACCAGAGGAACCGGCCTTGGTGCCGGAAGTGGCTGGCTCGGGAGGGCGGC
TGTAA

Synonyms

Publications