jgi.p|Nanoce1779_2|565129, mRNA_3886 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565129
Unique NamemRNA_3886
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_8:309085..311270 -

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Properties
Property NameValue
TranscriptId565215
TrackFilteredModels2
ProteinId565129
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:309085..311270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565129gene_3886Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565129mRNA_3886-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3886CDS_3886Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3886 ID=mRNA_3886|Name=jgi.p|Nanoce1779_2|565129|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
ATGGAGGGAGGGCGGGAAGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGAT
GTTGATTTCGAGGTATTTGATGGAATTTGAGCAGCTCGAAATGATCGGAG
CGGGGAGATTTTCAATGGTGCACCGAGTCAAGAAGAGACTGGACGGATGG
GTGTATGCGATTAAACGGTCGCGGCATTCGTTGGAAACGGAGGGAGAGAA
GGAGGGGGCCTTGAGGGAGGTGTGGGCCTTGGCGGCTCTGCAGGGATGTC
CGCAGTTGGTGCGGTATATGGGGGCGTGGATGGAGGAGAAAAGGTTGTAT
ATTCTAACGGAATTTTGCCGGGGGGGATCGGTGGAGAGAGAGATTTTTGG
GGATGGGGAAGGGAGGGAGGGTGGGAAGGGGGAGGAGTGGTTGTTGAGGA
TGGTGCGGGATGTGGGCCTGGCGTTGGAGTTCATGCACGAGAGGGGCATT
GTGCACATGGACGTGAAGCCGGGAAACATTTTGATCGTGGGGGAGGGCGG
GGCCGAAGGCGGGAGGGAGGGAGGATTTAAGTTAGCGGATTTGGGCCATG
CGATCAAGGCGGATGGAAGTATGCCAGTGGCGGAGGGGGATGAGAGGTAT
CTGTCGATGGACATCCTGAAAGGGCTGGACTTGTTCAAGCTCTCAGCGGG
CATGGACGTGCCTCCCTACCGAGATATTCTAAGGCCCAACGATATTTTTG
GCTTGGGCGCCTCGTTGTATGAGTGTGCTTCTCGTGTACCTCTTGCGGGA
GGGGGGGCTGAATTCTTGGCGTTGAGGGAGGGGAGGTTGGTCCACATGCC
GGTGGTGGAGTTGGAGCCGCGCGCAGCATCGCAATCGATGTACGGTGATA
GCCCCACCATACGGCGAGACCAAAAACCGCTAACTGGCGCCACTTTGAAT
GCAAATATAAAGCTTTCCTTACGGTGA
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protein sequence of jgi.p|Nanoce1779_2|565129

>mRNA_3886-protein ID=mRNA_3886-protein|Name=jgi.p|Nanoce1779_2|565129|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MEGGREGGRAGGREGGMLISRYLMEFEQLEMIGAGRFSMVHRVKKRLDGW
VYAIKRSRHSLETEGEKEGALREVWALAALQGCPQLVRYMGAWMEEKRLY
ILTEFCRGGSVEREIFGDGEGREGGKGEEWLLRMVRDVGLALEFMHERGI
VHMDVKPGNILIVGEGGAEGGREGGFKLADLGHAIKADGSMPVAEGDERY
LSMDILKGLDLFKLSAGMDVPPYRDILRPNDIFGLGASLYECASRVPLAG
GGAEFLALREGRLVHMPVVELEPRAASQSMYGDSPTIRRDQKPLTGATLN
ANIKLSLR*
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mRNA from alignment at scaffold_8:309085..311270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3886 ID=mRNA_3886|Name=jgi.p|Nanoce1779_2|565129|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp|location=Sequence derived from alignment at scaffold_8:309085..311270- (Nannochloropsis oceanica)
ATGGAGGGAGGGCGGGAAGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGAT
GTTGATTTCGAGGTATTTGATGGAATTTGAGCAGCTCGAAATGATCGGAG
CGGGGAGATTTTCAATGGTGCACCGAGTCAAGAAGAGACTGGACGGATGG
GTGTATGCGATTAAACGGTCGCGGCATTCGTTGGAAACGGAGGGAGAGAA
GGAGGGGGCCTTGAGGGAGGTGTGGGCCTTGGCGGCTCTGCAGGGATGTC
CGCAGTTGGTGCGGTATATGGGGGCGTGGATGGAGGAGAAAAGGTTGTAT
ATTCTAACGGAATTTTGCCGGGGGGGATCGGTGGAGAGAGAGATTTTTGG
GGATGGGGAAGGGAGGGAGGGTGGGAAGGGGGAGGAGTGGTTGTTGAGGA
TGGTGCGGGATGTGGGCCTGGCGTTGGAGTTCATGCACGAGAGGGGCATT
GTGCACATGGACGTGAAGCCGGGAAACATTTTGATCGTGGGGGAGGGCGG
GGCCGAAGGCGGGAGGGAGGGAGGATTTAAGTTAGCGGATTTGGGCCATG
CGATCAAGGCGGATGGAAGTATGCCAGTGGCGGAGGGGGATGAGAGGTAG
GTTCACTGTTTGATTGTCCACTTACTTGTTATTCATACATTCCTACTGTT
TATTTCTATTCATGTACGTATGTATCTATTTGTTTACAACCGCCTCTTTT
CCCAACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCAGGTATCTGTCGATGGACATCCTGAAAGGGCTGGACTTGTTCA
AGCTCTCAGCGGGCATGGACGTGCCTCCCTACCGAGATATTCTAAGGCCC
AACGATATTTTTGGCTTGGGCGCCTCGTTGTATGAGTGTGCTTCTCGTGT
ACCTCTTGCGGGAGGGGGGGCTGAATTCTTGGCGTTGAGGGAGGGGAGGT
TGGTCCACATGCCGGTGGTGGAGTTGGAGGTGGAGAAGGGAGAGAGGGGA
GTGGGGGGGAGGAGGAAAGTGAAGGTGTATTCTGACGGGTTCGAGACATT
GTTGAGGGGGATGGTGGCGGTGGAGGGGAGAGAGAGGCCGACTGCAGCGG
TGGTGGTGAAAAGATCGATGGAATTGCTCGGAGGAGAAGGGGGTGAAGGG
GGGAGGGAGGGAGAGAGGGGAATGAAGAGCGGTCATGGTGGTATAAGTAA
CTCTGGAGGACTCCCAGCCTCACTGGCATCAGCACCAGCAGCAACAGCAG
CAGCAGCAGCGGTATCGGTGGCCGCAGCAGCAACAGCCCCAGAGCTTCAA
CAGCAGCAGCAACACCATCATCATCAGCAGCAGCAGGAGCAGCCTTCATT
TCCCTTGCCGACCACAACCTCCTCCTCCTCGTGCTGCAACCTTCCTCAAT
GCCAGGCCCAGCAGCAACGAATTTCCGCCTTAGAAGCCATGGTGCTATCT
TTGACTGGGGATGGATGAGGGAGGGCGGGAGAGAGTGAGGGCGGTGATCA
TTTTAGATGCACTTAGATGGGCTTGTTGGCAATAGCAATAGTGCTTTTGG
AGGATGGTCATGACGACGAAGATGAGAAAAGGCAGCAGCAGCTGCTGCAG
CAGCAGCAGTAGTAGTAGCAGTAACAGCAGTATGAGCAGAAAAAGAGGAG
TATTAGATATTATAGAGCATATTGTGAAAGTAATTGGTCACGAAGGCAAA
AGAAAAGACGAAAATAAACAGGGATCAGAGGAGGGCGTACGGACGAGGGA
TAGGAAAAGAAGAAAAAAAGCAAGAAGAGGTAGTAGGAGAGGAAGGAGAG
GGAAGAGGAGAAGAATGCGAAAGTGATGATGAAGAATGACAAGAAGAGCG
ACAAAAAGAAAAGGAAGAAAAACGAGTCGGAAGCTGAAAAACTGTAAGAG
GAGAAAGGAAATGGAATAAAAGAAATAAAGAAATGGAGACAGTCTTACAG
CTTCTACTCATCATCGCCCAAGGGGCATACCATAGACAAGGCTATTCTTA
AATTCTCCGAAGCGGAGCACAAAAGGCGACCACAAGCTCAATTTCTGGCG
AGGTGATGTTTCTCATGTGCACCAGCCGCGCGCAGCATCGCAATCGATGT
ACGGTGATAGCCCCACCATACGGCGAGACCAAAAACCGCTAACTGGCGCC
ACTTTGAATGCAAATATAAAGCTTTCCTTACGGTGA
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Coding sequence (CDS) from alignment at scaffold_8:309085..311270-

>mRNA_3886 ID=mRNA_3886|Name=jgi.p|Nanoce1779_2|565129|organism=Nannochloropsis oceanica|type=CDS|length=2781bp|location=Sequence derived from alignment at scaffold_8:309085..311270- (Nannochloropsis oceanica)
CCGCGCGCAGCATCGCAATCGATGTACGGTGATAGCCCCACCATACGGCG
AGACCAAAAACCGCTAACTGGCGCCACTTTGAATGCAAATATAAAGCTTT
CCTTACGGTGAGTATCTGTCGATGGACATCCTGAAAGGGCTGGACTTGTT
CAAGCTCTCAGCGGGCATGGACGTGCCTCCCTACCGAGATATTCTAAGGC
CCAACGATATTTTTGGCTTGGGCGCCTCGTTGTATGAGTGTGCTTCTCGT
GTACCTCTTGCGGGAGGGGGGGCTGAATTCTTGGCGTTGAGGGAGGGGAG
GTTGGTCCACATGCCGGTGGTGGAGTTGGAGATGGAGGGAGGGCGGGAAG
GCGGGCGGGCGGGAGGGAGGGAGGGAGGGATGTTGATTTCGAGGTATTTG
ATGGAATTTGAGCAGCTCGAAATGATCGGAGCGGGGAGATTTTCAATGGT
GCACCGAGTCAAGAAGAGACTGGACGGATGGGTGTATGCGATTAAACGGT
CGCGGCATTCGTTGGAAACGGAGGGAGAGAAGGAGGGGGCCTTGAGGGAG
GTGTGGGCCTTGGCGGCTCTGCAGGGATGTCCGCAGTTGGTGCGGTATAT
GGGGGCGTGGATGGAGGAGAAAAGGTTGTATATTCTAACGGAATTTTGCC
GGGGGGGATCGGTGGAGAGAGAGATTTTTGGGGATGGGGAAGGGAGGGAG
GGTGGGAAGGGGGAGGAGTGGTTGTTGAGGATGGTGCGGGATGTGGGCCT
GGCGTTGGAGTTCATGCACGAGAGGGGCATTGTGCACATGGACGTGAAGC
CGGGAAACATTTTGATCGTGGGGGAGGGCGGGGCCGAAGGCGGGAGGGAG
GGAGGATTTAAGTTAGCGGATTTGGGCCATGCGATCAAGGCGGATGGAAG
TATGCCAGTGGCGGAGGGGGATGAGAGCCGCGCGCAGCATCGCAATCGAT
GTACGGTGATAGCCCCACCATACGGCGAGACCAAAAACCGCTAACTGGCG
CCACTTTGAATGCAAATATAAAGCTTTCCTTACGGTGAGTATCTGTCGAT
GGACATCCTGAAAGGGCTGGACTTGTTCAAGCTCTCAGCGGGCATGGACG
TGCCTCCCTACCGAGATATTCTAAGGCCCAACGATATTTTTGGCTTGGGC
GCCTCGTTGTATGAGTGTGCTTCTCGTGTACCTCTTGCGGGAGGGGGGGC
TGAATTCTTGGCGTTGAGGGAGGGGAGGTTGGTCCACATGCCGGTGGTGG
AGTTGGAGATGGAGGGAGGGCGGGAAGGCGGGCGGGCGGGAGGGAGGGAG
GGAGGGATGTTGATTTCGAGGTATTTGATGGAATTTGAGCAGCTCGAAAT
GATCGGAGCGGGGAGATTTTCAATGGTGCACCGAGTCAAGAAGAGACTGG
ACGGATGGGTGTATGCGATTAAACGGTCGCGGCATTCGTTGGAAACGGAG
GGAGAGAAGGAGGGGGCCTTGAGGGAGGTGTGGGCCTTGGCGGCTCTGCA
GGGATGTCCGCAGTTGGTGCGGTATATGGGGGCGTGGATGGAGGAGAAAA
GGTTGTATATTCTAACGGAATTTTGCCGGGGGGGATCGGTGGAGAGAGAG
ATTTTTGGGGATGGGGAAGGGAGGGAGGGTGGGAAGGGGGAGGAGTGGTT
GTTGAGGATGGTGCGGGATGTGGGCCTGGCGTTGGAGTTCATGCACGAGA
GGGGCATTGTGCACATGGACGTGAAGCCGGGAAACATTTTGATCGTGGGG
GAGGGCGGGGCCGAAGGCGGGAGGGAGGGAGGATTTAAGTTAGCGGATTT
GGGCCATGCGATCAAGGCGGATGGAAGTATGCCAGTGGCGGAGGGGGATG
AGAGCCGCGCGCAGCATCGCAATCGATGTACGGTGATAGCCCCACCATAC
GGCGAGACCAAAAACCGCTAACTGGCGCCACTTTGAATGCAAATATAAAG
CTTTCCTTACGGTGAGTATCTGTCGATGGACATCCTGAAAGGGCTGGACT
TGTTCAAGCTCTCAGCGGGCATGGACGTGCCTCCCTACCGAGATATTCTA
AGGCCCAACGATATTTTTGGCTTGGGCGCCTCGTTGTATGAGTGTGCTTC
TCGTGTACCTCTTGCGGGAGGGGGGGCTGAATTCTTGGCGTTGAGGGAGG
GGAGGTTGGTCCACATGCCGGTGGTGGAGTTGGAGATGGAGGGAGGGCGG
GAAGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGATGTTGATTTCGAGGTA
TTTGATGGAATTTGAGCAGCTCGAAATGATCGGAGCGGGGAGATTTTCAA
TGGTGCACCGAGTCAAGAAGAGACTGGACGGATGGGTGTATGCGATTAAA
CGGTCGCGGCATTCGTTGGAAACGGAGGGAGAGAAGGAGGGGGCCTTGAG
GGAGGTGTGGGCCTTGGCGGCTCTGCAGGGATGTCCGCAGTTGGTGCGGT
ATATGGGGGCGTGGATGGAGGAGAAAAGGTTGTATATTCTAACGGAATTT
TGCCGGGGGGGATCGGTGGAGAGAGAGATTTTTGGGGATGGGGAAGGGAG
GGAGGGTGGGAAGGGGGAGGAGTGGTTGTTGAGGATGGTGCGGGATGTGG
GCCTGGCGTTGGAGTTCATGCACGAGAGGGGCATTGTGCACATGGACGTG
AAGCCGGGAAACATTTTGATCGTGGGGGAGGGCGGGGCCGAAGGCGGGAG
GGAGGGAGGATTTAAGTTAGCGGATTTGGGCCATGCGATCAAGGCGGATG
GAAGTATGCCAGTGGCGGAGGGGGATGAGAG
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Synonyms
Publications