jgi.p|Nanoce1779_2|585708, mRNA_3881 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585708
Unique Name	mRNA_3881
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1516
Alignment location	scaffold_8:294601..296116 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585794
Track	FilteredModels2
ProteinId	585708

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:294601..296116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585708	gene_3881	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585708	mRNA_3881-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3881	CDS_3881	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:294601..296116+
coding sequence from alignment at scaffold_8:294601..296116+

mRNA sequence

>mRNA_3881 ID=mRNA_3881|Name=jgi.p|Nanoce1779_2|585708|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp
ACAGGCACCTGCGAGACGCAAAGGGACTGGAAGGGCGGCGACATAACCCG
AAGCCAGGAGGTTGGCCCCTCCTCCTCCTTTCCTCCTTCCTCGCCACCAT
TTCCCCCTCCTCAAAGCATGGACGGCGGCCTCTCTCTCTCCTCCTTTCTG
CATGGGCTTGGTGACGTCCGTTCCGGTCAATTAACTTCCGCCTTGACCAC
CATTTGGTACATCATTCAAATCATAGCCTCCATAAGCGTGCTAATCGTAG
AATGGGAACATGCCTGTGACCAACGCCTAAATCTGTGGTTGACCGTCTCG
ACGTGTCGTGTTATTTTAAGACTGGCGTTGTCAAGCATCGCTCTTACGTT
GGCAACGACTGCGTGGGGGAGGGTACGACAGTTTTTGCCTTCCTCCTCCT
CGGTGGTCTTGGCCTCCTTGCCCACGTCGTTCGCTTCGCCGTCGTCAGGA
GAAGCAGCAGCAGCTGCAGCAGCTGCAACAACAAGAAGTGATAGACAGGA
TAGTAGGAGTCATAGGAATAGGATTATAATCAGTAATCACAATGGGAATG
GGGTGGAACAAGAAGGAGAAGGAGACGAAGGTGGAAGAAGGCGAACTTCC
GAGGAGCAAGCACGAAGACAACAACGGAGAGAAGCCAGGCGGCAACGCCG
CCTTTTCCTTCACACTCCCATCATACCTTCTTCACCTTCTCGTCCCCGCA
TCATCCTCAACTCCAACCTCACCCCCAGCCCTCCGCCCCGACCTCCGATG
GTTGTGGAGAAGGCTAGGGAAATCCTGGATATACTTGCCTTGATATGGTT
CACCCTCGGCAACGCCTGGGTTTTCGGCTCGCGGAGTTGTCGCTTCACCT
CTCCCGGTATATTTTACGTGAGTCTCGCCATCATCATCGTCACGTACGTT
TCCATGCTCTTCCCTGTGCTTCTCGCGGTGTTGTTCGTGCCGTTGGCGTG
CTTTTGCATGCCATGTTTTTTGAGGCTGGCCCTCCAGGTCCGGGCCCAGG
ACGGTAATACTCGAGGGGCATCTAGGACGGAGATCGATGCCTTGCCCACG
GTGATATATAGGGAAGGGATGTTTGACGGTGAGGGGGGCAATGGCGGCAC
GTGCGCGATTTGCCTGACGGAGTACGAGGAGGAGGAGACATTGAGGATGC
TGCAGTGTCCGGGGAAGCACCACTTCCATGTGGCGTGCGTGGACCAGTGG
CTGAGGTAGGTTTGTCATAAACACACACGCTCTCTGTCTATCTCTCTTCT
TATCTCACTCACTCGCTCATCAATTGCCTCTCTCTTACTCTGTTTCCCAA
ATAAAGGATTAATTCAGTCTGTCCTTGCTGTCGAGAAGACGTGGTTCCTA
ACCGCCCAGCATCACCTGGGAGGCAGCAGACAGGGAGGGAAGGAGACAGG
GAGGGGGAGCGGGACTTAGAAGCTGGTGCAGAAGAGGAAGAAGAAGATGA
GGAGGGCGATGACGAAATTGAGGGGGGGGAGAGCTGGGAGGTGAGGTGGG
TGGAGGAGGTGGGGGA

protein sequence of jgi.p|Nanoce1779_2|585708

>mRNA_3881-protein ID=mRNA_3881-protein|Name=jgi.p|Nanoce1779_2|585708|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MDGGLSLSSFLHGLGDVRSGQLTSALTTIWYIIQIIASISVLIVEWEHAC
DQRLNLWLTVSTCRVILRLALSSIALTLATTAWGRVRQFLPSSSSVVLAS
LPTSFASPSSGEAAAAAAAATTRSDRQDSRSHRNRIIISNHNGNGVEQEG
EGDEGGRRRTSEEQARRQQRREARRQRRLFLHTPIIPSSPSRPRIILNSN
LTPSPPPRPPMVVEKAREILDILALIWFTLGNAWVFGSRSCRFTSPGIFY
VSLAIIIVTYVSMLFPVLLAVLFVPLACFCMPCFLRLALQVRAQDGNTRG
ASRTEIDALPTVIYREGMFDGEGGNGGTCAICLTEYEEEETLRMLQCPGK
HHFHVACVDQWLR*

mRNA from alignment at scaffold_8:294601..296116+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3881 ID=mRNA_3881|Name=jgi.p|Nanoce1779_2|585708|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp|location=Sequence derived from alignment at scaffold_8:294601..296116+ (Nannochloropsis oceanica)
ACAGGCACCTGCGAGACGCAAAGGGACTGGAAGGGCGGCGACATAACCCG
AAGCCAGGAGGTTGGCCCCTCCTCCTCCTTTCCTCCTTCCTCGCCACCAT
TTCCCCCTCCTCAAAGCATGGACGGCGGCCTCTCTCTCTCCTCCTTTCTG
CATGGGCTTGGTGACGTCCGTTCCGGTCAATTAACTTCCGCCTTGACCAC
CATTTGGTACATCATTCAAATCATAGCCTCCATAAGCGTGCTAATCGTAG
AATGGGAACATGCCTGTGACCAACGCCTAAATCTGTGGTTGACCGTCTCG
ACGTGTCGTGTTATTTTAAGACTGGCGTTGTCAAGCATCGCTCTTACGTT
GGCAACGACTGCGTGGGGGAGGGTACGACAGTTTTTGCCTTCCTCCTCCT
CGGTGGTCTTGGCCTCCTTGCCCACGTCGTTCGCTTCGCCGTCGTCAGGA
GAAGCAGCAGCAGCTGCAGCAGCTGCAACAACAAGAAGTGATAGACAGGA
TAGTAGGAGTCATAGGAATAGGATTATAATCAGTAATCACAATGGGAATG
GGGTGGAACAAGAAGGAGAAGGAGACGAAGGTGGAAGAAGGCGAACTTCC
GAGGAGCAAGCACGAAGACAACAACGGAGAGAAGCCAGGCGGCAACGCCG
CCTTTTCCTTCACACTCCCATCATACCTTCTTCACCTTCTCGTCCCCGCA
TCATCCTCAACTCCAACCTCACCCCCAGCCCTCCGCCCCGACCTCCGATG
GTTGTGGAGAAGGCTAGGGAAATCCTGGATATACTTGCCTTGATATGGTT
CACCCTCGGCAACGCCTGGGTTTTCGGCTCGCGGAGTTGTCGCTTCACCT
CTCCCGGTATATTTTACGTGAGTCTCGCCATCATCATCGTCACGTACGTT
TCCATGCTCTTCCCTGTGCTTCTCGCGGTGTTGTTCGTGCCGTTGGCGTG
CTTTTGCATGCCATGTTTTTTGAGGCTGGCCCTCCAGGTCCGGGCCCAGG
ACGGTAATACTCGAGGGGCATCTAGGACGGAGATCGATGCCTTGCCCACG
GTGATATATAGGGAAGGGATGTTTGACGGTGAGGGGGGCAATGGCGGCAC
GTGCGCGATTTGCCTGACGGAGTACGAGGAGGAGGAGACATTGAGGATGC
TGCAGTGTCCGGGGAAGCACCACTTCCATGTGGCGTGCGTGGACCAGTGG
CTGAGGTAGGTTTGTCATAAACACACACGCTCTCTGTCTATCTCTCTTCT
TATCTCACTCACTCGCTCATCAATTGCCTCTCTCTTACTCTGTTTCCCAA
ATAAAGGATTAATTCAGTCTGTCCTTGCTGTCGAGAAGACGTGGTTCCTA
ACCGCCCAGCATCACCTGGGAGGCAGCAGACAGGGAGGGAAGGAGACAGG
GAGGGGGAGCGGGACTTAGAAGCTGGTGCAGAAGAGGAAGAAGAAGATGA
GGAGGGCGATGACGAAATTGAGGGGGGGGAGAGCTGGGAGGTGAGGTGGG
TGGAGGAGGTGGGGGA

Coding sequence (CDS) from alignment at scaffold_8:294601..296116+

>mRNA_3881 ID=mRNA_3881|Name=jgi.p|Nanoce1779_2|585708|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_8:294601..296116+ (Nannochloropsis oceanica)
ATGGACGGCGGCCTCTCTCTCTCCTCCTTTCTGCATGGGCTTGGTGACGT
CCGTTCCGGTCAATTAACTTCCGCCTTGACCACCATTTGGTACATCATTC
AAATCATAGCCTCCATAAGCGTGCTAATCGTAGAATGGGAACATGCCTGT
GACCAACGCCTAAATCTGTGGTTGACCGTCTCGACGTGTCGTGTTATTTT
AAGACTGGCGTTGTCAAGCATCGCTCTTACGTTGGCAACGACTGCGTGGG
GGAGGGTACGACAGTTTTTGCCTTCCTCCTCCTCGGTGGTCTTGGCCTCC
TTGCCCACGTCGTTCGCTTCGCCGTCGTCAGGAGAAGCAGCAGCAGCTGC
AGCAGCTGCAACAACAAGAAGTGATAGACAGGATAGTAGGAGTCATAGGA
ATAGGATTATAATCAGTAATCACAATGGGAATGGGGTGGAACAAGAAGGA
GAAGGAGACGAAGGTGGAAGAAGGCGAACTTCCGAGGAGCAAGCACGAAG
ACAACAACGGAGAGAAGCCAGGCGGCAACGCCGCCTTTTCCTTCACACTC
CCATCATACCTTCTTCACCTTCTCGTCCCCGCATCATCCTCAACTCCAAC
CTCACCCCCAGCCCTCCGCCCCGACCTCCGATGGTTGTGGAGAAGGCTAG
GGAAATCCTGGATATACTTGCCTTGATATGGTTCACCCTCGGCAACGCCT
GGGTTTTCGGCTCGCGGAGTTGTCGCTTCACCTCTCCCGGTATATTTTAC
GTGAGTCTCGCCATCATCATCGTCACGTACGTTTCCATGCTCTTCCCTGT
GCTTCTCGCGGTGTTGTTCGTGCCGTTGGCGTGCTTTTGCATGCCATGTT
TTTTGAGGCTGGCCCTCCAGGTCCGGGCCCAGGACGGTAATACTCGAGGG
GCATCTAGGACGGAGATCGATGCCTTGCCCACGGTGATATATAGGGAAGG
GATGTTTGACGGTGAGGGGGGCAATGGCGGCACGTGCGCGATTTGCCTGA
CGGAGTACGAGGAGGAGGAGACATTGAGGATGCTGCAGTGTCCGGGGAAG
CACCACTTCCATGTGGCGTGCGTGGACCAGTGGCTGAGGTAG

Synonyms

Publications