jgi.p|Nanoce1779_2|629593, mRNA_3880 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629593
Unique NamemRNA_3880
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length275
Alignment locationscaffold_8:293282..293779 -

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Properties
Property NameValue
TranscriptId629679
TrackFilteredModels2
ProteinId629593
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:293282..293779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629593gene_3880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629593mRNA_3880-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3880CDS_3880Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3880 ID=mRNA_3880|Name=jgi.p|Nanoce1779_2|629593|organism=Nannochloropsis oceanica|type=mRNA|length=275bp
CTCGAGCCATGAAGCGCGGGAACGACAGAGGGCACCTGGGCAAGGACGAA
TACAACCGCGCAGTTGAAGAGGAGGATGACATGGATGACATTGGCTCGGG
CACATATAGGAAGGCCGATGAGAGCGTTCTGAAAACCCGCAAGATCATTA
AGGCCTCCCGTCGTTTTTCTGGCGGCCACGGGGCTATCGGCGATGACTAT
CTTTCTCCCGCTGCGGTATCTACCGGTGGTGAGCCACCCAAAACCAACAA
CCCCTTCCGAGGTTTCAGTTTCATG
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protein sequence of jgi.p|Nanoce1779_2|629593

>mRNA_3880-protein ID=mRNA_3880-protein|Name=jgi.p|Nanoce1779_2|629593|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MKRGNDRGHLGKDEYNRAVEEEDDMDDIGSGTYRKADESVLKTRKIIKAS
RRFSGGHGAIGDDYLSPAAVSTGGEPPKTNNPFRGFSFM
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mRNA from alignment at scaffold_8:293282..293779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3880 ID=mRNA_3880|Name=jgi.p|Nanoce1779_2|629593|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_8:293282..293779- (Nannochloropsis oceanica)
CTCGAGCCATGAAGCGCGGGAACGACAGAGGGCACCTGGGCAAGGACGAA
TACAACCGCGCAGTTGAAGAGGAGGATGACATGGATGACATTGGCTCGGG
CACATATAGGAAGGCCGATGAGAGGTGAGGGATCAAGGGACGGCGGGATT
GGGGATAAGAGGGAATAAAGCTCATGTCCCTCCAGTACGCTACAAAGGCT
GAATAATGCCCCGCTTTTCTTTAAGTAAATGATTGAAGCGTTCCGTTGAC
GAAGCACTCATCCTCTATCTACTTCAAAGTTTCCCCCAACCCATCCTCTC
ATCACATACCCCGACCTAAACCATCCTTTCACACACACAACTCACAGCGT
TCTGAAAACCCGCAAGATCATTAAGGCCTCCCGTCGTTTTTCTGGCGGCC
ACGGGGCTATCGGCGATGACTATCTTTCTCCCGCTGCGGTATCTACCGGT
GGTGAGCCACCCAAAACCAACAACCCCTTCCGAGGTTTCAGTTTCATG
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Coding sequence (CDS) from alignment at scaffold_8:293282..293779-

>mRNA_3880 ID=mRNA_3880|Name=jgi.p|Nanoce1779_2|629593|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_8:293282..293779- (Nannochloropsis oceanica)
CGTTCTGAAAACCCGCAAGATCATTAAGGCCTCCCGTCGTTTTTCTGGCG
GCCACGGGGCTATCGGCGATGACTATCTTTCTCCCGCTGCGGTATCTACC
GGTGGTGAGCCACCCAAAACCAACAACCCCTTCCGAGGTTTCAGTTTCAT
GATGAAGCGCGGGAACGACAGAGGGCACCTGGGCAAGGACGAATACAACC
GCGCAGTTGAAGAGGAGGATGACATGGATGACATTGGCTCGGGCACATAT
AGGAAGGCCGATGAGAGCGTTCTGAAAACCCGCAAGATCATTAAGGCCTC
CCGTCGTTTTTCTGGCGGCCACGGGGCTATCGGCGATGACTATCTTTCTC
CCGCTGCGGTATCTACCGGTGGTGAGCCACCCAAAACCAACAACCCCTTC
CGAGGTTTCAGTTTCATGATGAAGCGCGGGAACGACAGAGGGCACCTGGG
CAAGGACGAATACAACCGCGCAGTTGAAGAGGAGGATGACATGGATGACA
TTGGCTCGGGCACATATAGGAAGGCCGATGAGAG
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Synonyms
Publications